ID: uc003cua.1_intron_9_0_chr3_48642214_r.5p
GENE: (1)
chr3:48643003-48643252-


(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(23)
BREAST 		(40)
CELL-LINE 		(4)
CERVIX 		(4)
HEART 		(6)
HELA 		(11)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
CTGAGAAGAATAATGGGGCAGGCTACTTTTTGGAGCATCTGGCTTTCAAGGTGAGGCTCTTAAAGTCTGTCTCCTCTGGGCTTAGGGCTGCCTGTTGTCCCTCCTGAGGATGAAGGTCAGAAAAATTAGCCTGATTATGGGCCTCAGTTGCGGGGCTGATGTCTGGCTGGCTTTCCTAAAAGGAGCCACATGAGCTTAACCTCTCCTGAGTGGGCACGTATCTGATGAGCCCCTGCCTGAGGCCCTCAGA
..................................................................................................((((.((((((.....((((((..........)))))).....))))))....))))...............................................................................................
.................................................................................................98.........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040008(GSM532893)
G727N. (cervix)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM359194(GSM359194)
HepG2_TAP_AFFY_depl. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040027(GSM532912)
G220T. (cervix)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................CCTGAGGATGAAGGTCAGAAAA..............................................................................................................................22128.0028.001.00--2.001.00-5.00-----1.00----1.00---1.002.00-----1.00--1.00--2.00-------------1.001.00--1.00--1.00-----1.00---------------1.00----------------1.001.00-1.00----1.00-----------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAAT............................................................................................................................24123.0023.008.00---2.00----1.00--1.00--------1.00-----1.00---------------2.00----1.00-------2.00-----------------------1.00------1.001.00--1.00----------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAA.............................................................................................................................23123.0023.001.00--6.002.00-2.00--1.00--1.00--------1.001.001.00---1.001.00----------------------2.00--1.00-------------------------------------------------------1.001.00--------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAGCCTGATT..................................................................................................................35118.0018.00-6.009.00-----------------------------------------------2.00-------------------------------------------------------------------1.00-------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAA.............................................................................................................................24115.0015.00----2.00-1.00--2.00-------------1.00--------2.001.00---------------------1.00-------------1.00------1.00-------1.00---------------1.00------1.00------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAAT............................................................................................................................25111.0011.003.00--------1.00------------1.00----1.00---1.00-2.00------------------------------------------------1.00---------------------1.00---------------------
........................................................................................................................................................................................................................CGTATCTGATGAGCCCCTGCCTGAGG........2618.008.00-----------------------------3.00--------------2.00---------------------------1.00------------------------------1.00----------1.00-----------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGCCTGATT..................................................................................................................3418.008.00-5.001.00------------------------------------1.00-------------------1.00------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATT...........................................................................................................................2518.008.00------------------------2.00-2.00---------------1.00-----------1.00------------------1.00---------------1.00------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAA..............................................................................................................................2317.007.00--------1.00--------------1.00---------------------2.00-----------------------------1.00----------------1.00--------------------1.00------------
......................................................................................................................................................CGGGGCTGATGTCTGGCTGGCTTTCCTAAAAGGAGCCACATGAGCTTAACCTCTCCTGAGTGGGCACGTATCTGATGAGC....................8016.006.00--------------5.00---------------------------------------------------------------------------------------------------------1.00-----
.........................................................................................................................................................................................................................GTATCTGATGAGCCCCTGCCTGAGG........2515.005.00---------------5.00--------------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAA...............................................................................................................................2115.005.00----1.00---1.00--------------1.00--------1.00--------------------1.00------------------------------------------------------------------------
..................................................................................................................................................................................................................TGGGCACGTATCTGATGAGAA...................215.000.00----------5.00-------------------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGCCTGAT...................................................................................................................3315.005.00-1.00---4.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGC........................................................................................................................2815.005.00---3.00---------------------------------1.00---------------------------------1.00------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGA.................................................................................................................................1915.005.00-------------------1.00-----2.00--------------------------1.001.00------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAA...............................................................................................................................2214.004.00----1.00-------1.00---------------------------------------------------------------------------------------------1.00---------------1.00---
.....................................................................................................TCCTGAGGATGAAGGTCA...................................................................................................................................1814.004.00-------3.00------------1.00---------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAA................................................................................................................................2014.004.00-------------------1.00-----1.00--1.00-------------1.00-----------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAG..................................................................................................................................1814.004.00-------------1.00-----1.00-----------1.00---------------------------------------------------1.00------------------------------------------
.......................................................................................................CTGAGGATGAAGGTCAGAAAAATTAGCCTGATT..................................................................................................................3314.004.00-----3.00--------------------------------------------------------------------------------------------1.00---------------------------
.......................................................................................................CTGAGGATGAAGGTCAGAAAAATTAGCCTGATTATG...............................................................................................................3613.003.00----------------------------------------2.00------------------------------------------------------------1.00------------------------
....................................................................................................CTCCTGAGGATGAAGGTCAGAAAA..............................................................................................................................2413.003.00--------------------2.001.00--------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAG..................................................................................................................................1913.003.00-------------1.00---1.00-----------------1.00------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAGC........................................................................................................................2913.003.00------------------------------3.00-----------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGCC.......................................................................................................................2913.003.00-----------------------------------------------1.00-------------------------------1.00-------------------------------------1.00--------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAGCCTGATTA.................................................................................................................3613.003.00-----------------------------------------------------------------1.001.00-----------------------------------------1.00-----------------
...AGAAGAATAATGGGGCAGGCTAC................................................................................................................................................................................................................................2312.002.00-----------------------------------------2.00------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TCTCCTGAGTGGGCACGTATCTGATGAGC....................2912.002.00--1.00---------------------------------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................TGATGTCTGGCTGGCTTTCCTAAAAGG...................................................................2712.002.00----------------------------------------------2.00-------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGCCTGA....................................................................................................................3212.002.00-------1.00----------------------------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................CTCTCCTGAGTGGGCACGTATCTGATGAGC....................3012.002.00--------------------1.00------------------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................AGTTGCGGGGCTGATGTCTGGCTGGCTTTCCT.........................................................................3212.002.00-----------2.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TCTCCTGAGTGGGCACGTATCTGATGAG.....................2812.002.00--------------------------------------1.00----------1.00----------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTC....................................................................................................................................1721.501.50------------------------------------0.50---------------------0.50----------------------------------------------------------------0.50--
.TGAGAAGAATAATGGGGCAGGC...................................................................................................................................................................................................................................2211.001.00------------------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................ATTATGGGCCTCAGTTGCGG.................................................................................................2011.001.00---------------------------------------------------------------------------------1.00--------------------------------------------
....................................................................................................................................GATTATGGGCCTCAGTTG....................................................................................................1811.001.00---------------------------------------1.00--------------------------------------------------------------------------------------
....GAAGAATAATGGGGCAGGCTACTTTTTGGAGCA.....................................................................................................................................................................................................................3311.001.00-----------------------------------------------1.00------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTAA...................................................................................................................................181.000.00--------------------------------------------------------------------------------------------------------------------1.00---------
...........................TTTTGGAGCATCTGGCTTTCAAGG.......................................................................................................................................................................................................2411.001.00------------------------------------------------------------1.00-----------------------------------------------------------------
............ATGGGGCAGGCTACTTTT............................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00-----------------------------------
....................................................................................................CTCCTGAGGATGAAGGTCAG..................................................................................................................................2011.001.00-----------------1.00------------------------------------------------------------------------------------------------------------
........................ACTTTTTGGAGCATCTGGC...............................................................................................................................................................................................................1911.001.00--------------------------------------1.00---------------------------------------------------------------------------------------
...........AATGGGGCAGGCTACTTTTTGGAGCATA...................................................................................................................................................................................................................281.000.00-----------------------------------1.00------------------------------------------------------------------------------------------
..GAGAAGAATAATGGGGCAGGCTACTT..............................................................................................................................................................................................................................2611.001.00-------------1.00----------------------------------------------------------------------------------------------------------------
.................................................................................................................AGGTCAGAAAAATTAGCCTGATTAT................................................................................................................2511.001.00--------------------------------------------------------------------1.00---------------------------------------------------------
....GAAGAATAATGGGGCAGGCTACTTTTT...........................................................................................................................................................................................................................2711.001.00------------------1.00-----------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCAGAAAAATTAGCCTG.....................................................................................................................3111.001.00-----------1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGA.................................................................................................................................2011.001.00-------------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAA..................................................................................................................................1911.004.00---------------------------------------------------------1.00--------------------------------------------------------------------
....................................................................................................CTCCTGAGGATGAAGGTCAGAAAAATT...........................................................................................................................2711.001.00-----------------------------------------------------------------------------------------------------------------------1.00------
................................................................................................................................................................................................................AGTGGGCACGTATCTGAT........................1811.001.00-------------------------------------------------------------------------------------------------------------1.00----------------
.................................................GGTGAGGCTCTTAAAGAC.......................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00--------------------------------------------------------------
...................................................................................................................................................TTGCGGGGCTGATGTCTGGCTGGCCT.............................................................................261.000.00-----------1.00------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................CGGGGCTGATGTCTGGCTGG................................................................................2011.001.00----------------------------------------------------------------1.00-------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTA..........................................................................................................................2711.001.00------------------------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GGGCACGTATCTGATGAGCCCCTGC..............2511.001.00-------------------------------------------------------------------1.00----------------------------------------------------------
...AGAAGAATAATGGGGCAGGGTA.................................................................................................................................................................................................................................221.000.00--------------------------------------------------------------------------1.00---------------------------------------------------
............................................................................................................GATGAAGGTCAGAAAAATTAGCCTGATT..................................................................................................................2811.001.00----------------------------------------------------------------------------------------------------------------1.00-------------
.................................AGCATCTGGCTTTCAAGG.......................................................................................................................................................................................................1811.001.00-----------------------------------1.00------------------------------------------------------------------------------------------
..............GGGGCAGGCTACTTTTTG..........................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................ACCTCTCCTGAGTGGGCACGTACCTG..........................261.000.00----------------1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAGCCTG.....................................................................................................................3211.001.00---------------------------------------------------------------------------------------------1.00--------------------------------
...................................CATCTGGCTTTCAAGGGA.....................................................................................................................................................................................................181.000.00-------------------------------------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................GGGGCTGATGTCTGGCTG.................................................................................1811.001.00---------------------------------------------------------------------------------------------------------1.00--------------------
......................................................................................................CCTGAGGATGAAGGTCAGATAA..............................................................................................................................2211.005.00--------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................CTCCTGAGGATGAAGGTCAGAAAAATTAGC........................................................................................................................3011.001.00----1.00-------------------------------------------------------------------------------------------------------------------------
....GAAGAATAATGGGGCAGGCTACTTTTTGGA........................................................................................................................................................................................................................3011.001.00--------------------------------------------------------------1.00---------------------------------------------------------------
...........................TTTTGGAGCATCTGGCTTTCAAGGGAAC...................................................................................................................................................................................................2811.001.00------------------1.00-----------------------------------------------------------------------------------------------------------
................................GAGCATCTGGCTTTCAAGGG......................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------1.00-----------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAC.............................................................................................................................2411.007.00----------------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTC....................................................................................................................................1621.001.00-------------------------------------0.50--------------------------------------------------------------------------------------0.50-
........................................................................................................................................................................................................................CGTATCTGATGAGCCCCTGC..............2011.001.00-------------------------------------------------------------------------------------------------------------------------1.00----
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAG.........................................................................................................................2811.001.00--------1.00---------------------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTAG...................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------------------1.00----------
.................................................................................................................AGGTCAGAAAAATTAGCCTGATT..................................................................................................................2311.001.00-------1.00----------------------------------------------------------------------------------------------------------------------
...........AATGGGGCAGGCTACTTTTTGGAG.......................................................................................................................................................................................................................2411.001.00----------------------------------------------------------------------1.00-------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATTAGCCTGA....................................................................................................................3311.001.00----------------1.00-------------------------------------------------------------------------------------------------------------
......................................................................................................CCTGAGGATGAAGGTCA...................................................................................................................................1711.001.00--------1.00---------------------------------------------------------------------------------------------------------------------
.......................................................................................................CTGAGGATGAAGGTCAGAAAAATTAGC........................................................................................................................2711.001.00--------------------------1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGAGCCCCTGCCTGAGGCCCTC...2311.001.00-----------1.00------------------------------------------------------------------------------------------------------------------
...........................TTTTGGAGCATCTGGC...............................................................................................................................................................................................................1611.001.00---------------------------------------------------------------------------------------------------1.00--------------------------
......................CTACTTTTTGGAGCATCTGG................................................................................................................................................................................................................2011.001.00----------------------------------------------------------1.00-------------------------------------------------------------------
...AGAAGAATAATGGGGCAGGCTACT...............................................................................................................................................................................................................................2411.001.00-------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................AGGGCTGCCTGTTGTCCCTCCTGAGGACG..........................................................................................................................................291.000.00----------------1.00-------------------------------------------------------------------------------------------------------------
........AATAATGGGGCAGGCTA.................................................................................................................................................................................................................................1711.001.00------------------------------------------------------------------------------------------------1.00-----------------------------
....................................................................................................CTCCTGAGGATGAAGGTA....................................................................................................................................181.000.00------------1.00-----------------------------------------------------------------------------------------------------------------
..............................TGGAGCATCTGGCTTTCAAGGGAAC...................................................................................................................................................................................................251.000.00------------------1.00-----------------------------------------------------------------------------------------------------------
..................CAGGCTACTTTTTGGAGCATCTGG................................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------------------1.00---------------------------------------
..............................................................................................TTGTCCCTCCTGAGGATGAAGGTCAG..................................................................................................................................2611.001.00----------------1.00-------------------------------------------------------------------------------------------------------------
..GAGAAGAATAATGGGGCAGGCTA.................................................................................................................................................................................................................................2311.001.00-------------1.00----------------------------------------------------------------------------------------------------------------
.....................................................................................................TCCTGAGGATGAAGGTCAGAAAAATT...........................................................................................................................2611.001.00-----------------1.00------------------------------------------------------------------------------------------------------------
....................................................................................................CTCCTGAGGATGAAGG......................................................................................................................................1640.750.75-0.250.25---------------------------------0.25-----------------------------------------------------------------------------------------

Antisense strand
CTGAGAAGAATAATGGGGCAGGCTACTTTTTGGAGCATCTGGCTTTCAAGGTGAGGCTCTTAAAGTCTGTCTCCTCTGGGCTTAGGGCTGCCTGTTGTCCCTCCTGAGGATGAAGGTCAGAAAAATTAGCCTGATTATGGGCCTCAGTTGCGGGGCTGATGTCTGGCTGGCTTTCCTAAAAGGAGCCACATGAGCTTAACCTCTCCTGAGTGGGCACGTATCTGATGAGCCCCTGCCTGAGGCCCTCAGA
..................................................................................................((((.((((((.....((((((..........)))))).....))))))....))))...............................................................................................
.................................................................................................98.........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040008(GSM532893)
G727N. (cervix)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM359194(GSM359194)
HepG2_TAP_AFFY_depl. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040027(GSM532912)
G220T. (cervix)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................GGAGCCACATGAGCTCCCT.................................................. 191.000.00-----1.00------------------------------------------------------------------------------------------------------------------------
............................................................................................TCAGGAGGGACAACA............................................................................................................................................... 1540.250.25----------------0.25-------------------------------------------------------------------------------------------------------------
.................................................................................................CATCCTCAGGAGGGA.......................................................................................................................................... 1580.250.25--------------------------------------0.12--------------------------------------------------------------------------------------0.12