ID: uc003ctz.2_intron_17_0_chr3_48607082_r
GENE: COL7A1(100)
chr3:48607032-48607207-


(1)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(4)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(34)
SKIN 		(1)
XRN.ip

Sense strand
CTTTTGCCCAATAGGGTGATGTTGGGAGTGCAGGACTAAAGGGTGACAAGGTGAGTGTGGGCATGGGGAGGGCAGGGCAGGGGCCAGGGTGCTCCCGACTCCTCTGATTCCTGCCTGCCCCCTCAGGGAGACTCAGCTGTGATCCTGGGGCCTCCAGGCCCACGGGGTGCCAAGGG
.........................................................((((...((((.(((((((.((((((...(((....)))....))))))...))))))).))))))))...................................................
.........................................................58..................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040028(GSM532913)
G026N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................ATTCCTGCCTGCCCCCTCAGT.................................................21115.001.006.00---1.00------1.002.00---1.001.00---1.00----1.00--------------1.00------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGTT................................................2219.001.007.00--------------------1.00------1.00-------------------------------------
..................................................GTGAGTGTGGGCATGGGGAGGGCAGGGCAGGGGCCAGGGTGCTCCCGACTCCTCTGATTCCTGCCTGCCCCCTC....................................................7419.009.00-8.00-------1.00--------------------------------------------------------
.........................................................................................................GATTCCTGCCTGCCCCCTCAGT.................................................225.000.00---------------------------1.00-1.00---------1.00---1.001.00---------------------
......................................................................................................TCTGATTCCTGCCTGCCATC......................................................205.000.00---5.00--------------------------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGA.................................................2114.001.00----1.00--------------1.00--------------------------------1.00------1.00------
......................................................................................................TCTGATTCCTGCCTGCCCCCT.....................................................2113.003.00-------2.00-----------------------------------------1.00----------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGTAA...............................................2313.001.00--1.00--------1.00---------------------------------------1.00--------------
......................................................................................................TCTGATTCCTGCCTGCCCCCA.....................................................2112.001.00----1.00-------------------------------------1.00-----------------------
......................................................................................................TCTGATTCCTGCCTGCCCCCAT....................................................2212.001.00------------------------------1.00---------------------------1.00-------
......................................................................................................TCTGATTCCTGCCTGCCAAA......................................................202.000.00--------2.00---------------------------------------------------------
..............................CAGGACTAAAGGGTGACAAG..............................................................................................................................2012.002.00-----------------1.00-1.00----------------------------------------------
.........................................................................................................GATTCCTGCCTGCCCCCTCAGTAG...............................................242.000.00--------1.00----1.00----------------------------------------------------
........................................................................................................TGATTCCTGCCTGCCCCCTCAG..................................................2212.002.00------1.00-------------------------------------------1.00---------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGTA................................................2212.001.00------1.00------------------------------------------------1.00----------
........................................................................................................TGATTCCTGCCTGCCCCCTCAGT.................................................2312.002.00--1.00---------------1.00-----------------------------------------------
........................................................................................................TGATTCCTGCCTGCCCCCTCTTTT................................................242.000.00---------------2.00--------------------------------------------------
........................................................................................................TGATTCCTGCCTGCCCCCTCAGA.................................................2312.002.00--1.00-------1.00-------------------------------------------------------
.........................................................................................................GATTCCTGCCTGCCCCCTCAAT.................................................221.000.00------------------------------------1.00-----------------------------
......................................................................................................................................AGCTGTGATCCTGGGGTGT.......................191.000.00---------------------------------------------------------1.00--------
.........................................................................................................GATTCCTGCCTGCCCCCTCAT..................................................211.000.00--------------------------------------------------------1.00---------
.........................................................................................................GATTCCTGCCTGCCCCCTCAGAA................................................231.000.00----------------1.00-------------------------------------------------
...........................GTGCAGGACTAAAGGGTGAC.................................................................................................................................2011.001.00----------------------------------------1.00-------------------------
..............................................................ATGGGGAGGGCAGGGCAGGG..............................................................................................2011.001.00------------------------1.00-----------------------------------------
......................................................................................................TCTGATTCCTGCCTGCCCCCTA....................................................2211.003.00------------------------------------------------------1.00-----------
..............................................................................AGGGGCCAGGGTGCTCCCGGGGT...........................................................................231.000.00----------------------------------------------1.00-------------------
........................................................................................................TGATTCCTGCCTGCCCCCTCAGTAAT..............................................2611.002.00-----------------------1.00------------------------------------------
...............................AGGACTAAAGGGTGACA................................................................................................................................1711.001.00--------------------------------1.00---------------------------------
.........................GAGTGCAGGACTAAAGGGT....................................................................................................................................1911.001.00------------------------------------------------1.00-----------------
.................GATGTTGGGAGTGCAGGACTCTG........................................................................................................................................231.000.00-----------------------------------------------------1.00------------
...............................................................................................................TGCCTGCCCCCTCAGGGCAG.............................................201.000.00-------------------------1.00----------------------------------------
.......................GGGAGTGCAGGACTAAAGGGTGACAAG..............................................................................................................................2711.001.00--------------------1.00---------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGAT................................................2211.001.00--------------------------------------1.00---------------------------
......................................................................................................TCTGATTCCTGCCTGCCCAAA.....................................................211.000.00-------------1.00----------------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGAA................................................2211.001.00-------------------------------------1.00----------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCGA..................................................201.000.00--1.00---------------------------------------------------------------
.........................................................................................................GATTCCTGCCTGCCCCCTCAGTT................................................231.000.00------------------------------------------------------------1.00-----
.....................................................................................................................CCCCCTCAGGGAGACTCAGCTGTA...................................241.000.00------1.00-----------------------------------------------------------
..................................................GTGAGTGTGGGCATGGGGAGGGCAGGGCAGGGGCCAGGGTGCTCCCGACTCCTCTGATTCCTGCCTGCCCCCTCAGT.................................................771.000.00---------1.00--------------------------------------------------------
........................................................................................................................CCTCAGGGAGACTCAGCTGTGATCC...............................2511.001.00---------------------------------------------1.00--------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGTAT...............................................2311.001.00----------------------------------1.00-------------------------------
........................................................................................................TGATTCCTGCCTGCCCCCTCAGTT................................................2411.002.00----------------------1.00-------------------------------------------
..................ATGTTGGGAGTGCAGGACTAAAGGGTGACA................................................................................................................................3011.001.00-------------------------------1.00----------------------------------
...............................AGGACTAAAGGGTGACAAG..............................................................................................................................1911.001.00--------------------1.00---------------------------------------------
..................................................GTGAGTGTGGGCATGGGGAGGGCAGGGCAGG...............................................................................................3111.001.00-----1.00------------------------------------------------------------
......................................................................................................TCTGATTCCTGCCTGCCCCC......................................................2011.001.00--1.00---------------------------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAGTAAT..............................................2411.001.00--------------1.00---------------------------------------------------
.........................................................TGGGCATGGGGAGGGCAGG....................................................................................................1911.001.00---------------------------------1.00--------------------------------
......................................................................................................TCTGATTCCTGCCTGCCCAC......................................................201.000.00------------------1.00-----------------------------------------------
......................................................................................................TCTGATTCCTGCCTGCCCCCTTT...................................................2311.003.00----1.00-------------------------------------------------------------
..................................................GTGAGTGTGGGCATGGGGAGGGCAGG....................................................................................................2611.001.00-----1.00------------------------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCAG..................................................2011.001.00-----1.00------------------------------------------------------------
...................TGTTGGGAGTGCAGGACTAAAG.......................................................................................................................................2211.001.00-------1.00----------------------------------------------------------
..........................................................................................................ATTCCTGCCTGCCCCCTCTTT.................................................211.000.00--------------1.00---------------------------------------------------
.........................................................................................................GATTCCTGCCTGCCCCCTCAGAG................................................231.000.00----------1.00-------------------------------------------------------
.........................................................TGGGCATGGGGAGGGCAG.....................................................................................................1830.330.33-------------------------------------------------------------0.33----
............................................................................................................................AGGGAGACTCAGCTGT....................................1640.250.25--------------------------------------------------------------0.25---
...............................................................TGGGGAGGGCAGGGCAGGG..............................................................................................1950.200.20---------------------------------------------------------------0.20--
...................................................TGAGTGTGGGCATGGGG............................................................................................................1760.170.17----------------------------------------------------------------0.17-
......................................................................................................TCTGATTCCTGCCTGC..........................................................1670.140.14-----------------------------------------------------------------0.14

Antisense strand
CTTTTGCCCAATAGGGTGATGTTGGGAGTGCAGGACTAAAGGGTGACAAGGTGAGTGTGGGCATGGGGAGGGCAGGGCAGGGGCCAGGGTGCTCCCGACTCCTCTGATTCCTGCCTGCCCCCTCAGGGAGACTCAGCTGTGATCCTGGGGCCTCCAGGCCCACGGGGTGCCAAGGG
.........................................................((((...((((.(((((((.((((((...(((....)))....))))))...))))))).))))))))...................................................
.........................................................58..................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040028(GSM532913)
G026N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................GGAGTGCAGGACTAAAGTCTA................................................................................................................................... 211.000.00-----------------------------------1.00------------------------------
...........................................................................................................................................TGATCCTGGGGCCTCCGCG.................. 191.000.00-----------------------------------------------1.00------------------