ID: uc003cto.1_intron_3_0_chr3_48520667_r.5p
GENE: SHISA5(3)
chr3:48538370-48538619-


(1)
AGO2.ip
(1)
B-CELL
(2)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(1)
HELA
(1)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
CTGAAGAAATTTGTGTGGAGCGAGGAAAGGTGTGCTGTGCCTGAGGCCAGGTGGGTGCACCAGTGGGTCACAGGGTGGGTGGCTTGAGCCTGTGCCCCACAGGAGAGTATGTGGAAGAGAGATAGCTCTGCCCCTCTGGCCTCTCAGCCCTCTCAAGATGGTGGCCAGAGCATTGGAGCAGAGGGTTTAGGGATCCCCTGTTCTGGGCTGGACCCCCTAGACCTGCTCAGTTAGTCCCCTGTCCATCTCC
..................................................................................................................................................(((((((.......((..((((....)))).))))))))).(((((...)))))..................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189784SRR029127(GSM416756)
A549. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR029129(GSM416758)
SW480. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.....................................................................................................................................................................................AGGGTTTAGGGATCCAAA...................................................1849.000.0034.00-2.00-2.001.002.002.00--1.001.001.00-----1.00-1.00-1.00--
........ATTTGTGTGGAGCGAGGAAAGGTGTG........................................................................................................................................................................................................................2614.004.00-4.00-----------------------
.....................................................................................................................................................................................AGGGTTTAGGGATCCACA...................................................182.000.00--------------1.00----1.00-----
.....................................................................................................................................................................................AGGGTTTAGGGATCCATA...................................................181.000.001.00------------------------
.......................................................................................................................................................CTCAAGATGGTGGCCTGAA................................................................................191.000.00---------------------1.00---
...............TGGAGCGAGGAAAGGTGTGCT......................................................................................................................................................................................................................2111.001.00--------1.00----------------
.................GAGCGAGGAAAGGTGTGCTGTGC..................................................................................................................................................................................................................2311.001.00-----------------1.00-------
..............GTGGAGCGAGGAAAGGT...........................................................................................................................................................................................................................1711.001.00-------------1.00-----------
.....................................................................................................................................................................................AGGGTTTAGGGATCCTAA...................................................181.000.00--1.00----------------------
........................GAAAGGTGTGCTGTGCCTG...............................................................................................................................................................................................................1911.001.00----------------1.00--------
.........................................................................GGTGGGTGGCTTGAGTCGG..............................................................................................................................................................191.000.00---------------1.00---------
..................AGCGAGGAAAGGTGTGCTGTGCCT................................................................................................................................................................................................................2411.001.00--------1.00----------------
.....................................................................................................................................................................................AGGGTTTAGGGATCCAGA...................................................181.000.00-----1.00-------------------

Antisense strand
CTGAAGAAATTTGTGTGGAGCGAGGAAAGGTGTGCTGTGCCTGAGGCCAGGTGGGTGCACCAGTGGGTCACAGGGTGGGTGGCTTGAGCCTGTGCCCCACAGGAGAGTATGTGGAAGAGAGATAGCTCTGCCCCTCTGGCCTCTCAGCCCTCTCAAGATGGTGGCCAGAGCATTGGAGCAGAGGGTTTAGGGATCCCCTGTTCTGGGCTGGACCCCCTAGACCTGCTCAGTTAGTCCCCTGTCCATCTCC
..................................................................................................................................................(((((((.......((..((((....)))).))))))))).(((((...)))))..................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189784SRR029127(GSM416756)
A549. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR029129(GSM416758)
SW480. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
..........................................................................................................GTATGTGGAAGAGAGATAGG............................................................................................................................ 201.000.00---1.00---------------------
..........................................................................................................................................................................................................CTGGGCTGGACCCCCTGG.............................. 181.000.00-----------------------1.00-
...........................................................................................................TATGTGGAAGAGAGATAGGG........................................................................................................................... 201.000.00---1.00---------------------
.......................................................................................................AGAGTATGTGGAAGAGGTG................................................................................................................................ 191.000.00---------1.00---------------
.........................................................CCTGTGACCCACTGGTG................................................................................................................................................................................ 1740.750.75------------------------0.75