ID: uc003cso.2_intron_2_0_chr3_48337649_r.3p
GENE: (3)
chr3:48337599-48337848-


(2)
B-CELL
(1)
BREAST
(3)
CELL-LINE
(1)
HEART
(4)
HELA
(1)
LIVER
(5)
OTHER
(2)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AGGAGGTTAATGATTTACCCAAAACTACGCAGGTTGTAAGTGGCAGACCCTGGATTCAGACCCAGGTTTGTCAGACTCCAAGGTCCTTGTTCTTTTCTCTGAAACAATTTTTATTATTCTAGGTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTCCTCTCTCTTTGCAGGGCGTTTTTTCTATCAGAGGCTGGTGGAGTTCATGGCCAGGTACTTCAAA
..........................................................................................................(((((((((.((((.....))))))))))))).........((((...)))).(((((((....))))))).........................................................................
......................................................................................................103.........................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189785DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189787
..........................................................................................................................GTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTC................................................................64120.0020.0015.005.00------------------
..........................................................................................................................GTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGA.................................................................637.000.007.00-------------------
..........................................................................................................................GTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTAAA..............................................................6617.006.007.00-------------------
...........................................................................................................................TAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTCC...............................................................6416.006.00-6.00------------------
..........................................................................................................................GTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGT.................................................................6316.006.006.00-------------------
..............................................................................................................................................................CCAGGATGAAGGTATC............................................................................1615.005.00--5.00-----------------
....................................................................................................................................................................................................GCAGGGCGTTTTTTCTATCAGA................................2213.003.00---3.00----------------
..........................................................................................................................GTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTCATA.............................................................6713.0020.003.00-------------------
...............................................................................................................................................................CAGGATGAAGGTATC............................................................................1542.252.25--2.25-----------------
..................................................................................................................................................................................................TTGCAGGGCGTTTTTTCTATCAGAGGC.............................2712.002.00-----2.00--------------
......................................................................................................................................................................................................................CAGAGGCTGGTGGAGTTCATGGC.............2312.002.00-------2.00------------
.......................................................................................................................................................................................................................AGAGGCTGGTGGAGTTCATG...............2012.002.00---2.00----------------
...........................................................................................................TTTTTATTATTCTAGGTAG............................................................................................................................191.000.00------1.00-------------
......................................................................................................AACAATTTTTATTATTCTAG................................................................................................................................2011.001.00-----------------1.00--
..............................................................................................................................................................CCAGGATGAAGGTATCG...........................................................................1711.005.00----------1.00---------
..................................................................................................................................................................................................TTGCAGGGCGTTTTTTGTAG....................................201.000.00------------1.00-------
.............................................................................................................................................GAAAGTTGCCTTGGGCACC..........................................................................................1911.001.00------------------1.00-
......................................................................................................................................................................................................................CAGAGGCTGGTGGAGTTC..................1811.001.00-------------1.00------
...........................................................................................................................TAAGGAGGTAGAAGTACAGAAAGTTGC....................................................................................................2711.001.00-----1.00--------------
..........................................................................................................................................................................................................CGTTTTTTCTATCAGAGGCTGGTGGGG.....................271.000.00-----------1.00--------
...............TACCCAAAACTACGC............................................................................................................................................................................................................................1520.500.50-------------------0.50
...................................................................................................................................................................................................................TATCAGAGGCTGGTGGA......................1720.500.50---0.50----------------

Antisense strand
AGGAGGTTAATGATTTACCCAAAACTACGCAGGTTGTAAGTGGCAGACCCTGGATTCAGACCCAGGTTTGTCAGACTCCAAGGTCCTTGTTCTTTTCTCTGAAACAATTTTTATTATTCTAGGTAAGGAGGTAGAAGTACAGAAAGTTGCCTTGGGCACCAGGATGAAGGTATCTTGATGAAGGTCCTCTCTCTTTGCAGGGCGTTTTTTCTATCAGAGGCTGGTGGAGTTCATGGCCAGGTACTTCAAA
..........................................................................................................(((((((((.((((.....))))))))))))).........((((...)))).(((((((....))))))).........................................................................
......................................................................................................103.........................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189785DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189787
...............................................................................................................................GAGGTAGAAGTACAGTAG......................................................................................................... 183.000.00--------2.00------1.00----
.....................................................................GTCAGACTCCAAGGTCCC................................................................................................................................................................... 183.000.00----1.00----2.00----------
.....................................................................GTCAGACTCCAAGGTC..................................................................................................................................................................... 163.000.00----3.00---------------
.....................................................................................CTTGTTCTTTTCTCTGAATC................................................................................................................................................. 202.000.00--2.00-----------------
.......................................................................CAGACTCCAAGGTCCGC.................................................................................................................................................................. 171.000.00----------------1.00---
....................................................................TGTCAGACTCCAAGGCCA.................................................................................................................................................................... 181.000.00--------------1.00-----
..........................................................................................................................GTAAGGAGGTAGAAGTTG.............................................................................................................. 181.000.00------1.00-------------