ID: uc003crt.16
GENE: DHX30(17)
chr3:47889991-47890163+


(1)
AGO1.ip 		(2)
AGO2.ip 		(20)
B-CELL 		(3)
BRAIN 		(11)
BREAST 		(50)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(5)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(29)
SKIN 		(3)
UTERUS 		(2)
XRN.ip

Sense strand
TCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGTATGTAGGGGCTGGGCTGGGCTGGGCTGGGGAGTGGCTCTCGAGGGTGGTACTGACAGCTGAGCCGTTGCAGGGGTGCTGGACCAGCGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCT
.................................................................((..((((.(((((...((((((((....))))..))))..))))).))))...))....................................................
............................................................61............................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR037935(GSM510473)
293cand3. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038854(GSM458537)
MM653. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040010(GSM532895)
G529N. (cervix)
..................................................................................................GGTACTGACAGCTGAGCCGTTGCAG..................................................251193.00193.009.0020.0010.0013.007.005.0013.00-14.008.0011.004.00---3.003.002.001.00-3.003.00-3.004.00-3.001.002.00-2.00-2.003.00--1.00----1.002.003.002.002.00------2.00-1.001.00-1.001.001.002.00-1.00-1.002.002.00----1.00-1.00-------1.00-1.00------1.001.001.00-----1.00----1.00-------1.00--1.00----1.00---1.00-1.001.001.001.00-1.00------
.................................................................................................TGGTACTGACAGCTGAGCCGTTGCAG..................................................261126.00126.008.00-6.003.006.0011.002.00--3.00-4.0010.00-4.004.004.003.004.002.002.001.003.001.00---1.001.00-1.001.001.00-1.001.002.003.002.003.002.00-1.00-----1.00--1.00--1.001.002.00-1.001.00----1.00--1.00----1.00---1.001.00--1.00-1.00--1.001.001.00------------1.001.00----------1.001.00--1.00-1.00-----1.00------------
....AACATCAAGGCAGTGGA........................................................................................................................................................17214.5014.500.50------12.00-----------------1.00----------------------------------------------------------------------------------------------------------0.50-0.50--
.................................................................................................TGGTACTGACAGCTGAGCCGTTGCA...................................................25111.0011.005.00--1.001.00------1.00--------------------------------------1.00----------------1.00-1.00-------------------------------------------------------------------
...AAACATCAAGGCAGTGGA........................................................................................................................................................18210.0010.002.502.00-----3.00-----------------2.00-----------------------------------------------------------------------------------------------------------0.50---
.......................................................................CTGGGCTGGGGAGTGGGCG...................................................................................195.000.00-------------5.00---------------------------------------------------------------------------------------------------------------------------
.................................................................GCTGGGCTGGGCTGGGGAGTGGCTA...................................................................................254.000.00-----------------------------------------------2.00-------------2.00---------------------------------------------------------------------------
..................................................................CTGGGCTGGGCTGGGGAGTGGCA....................................................................................234.000.00---------------------------------------------------------------1.00-----1.00----------------------------------1.00------------------------1.00-------
....................................................................GGGCTGGGCTGGGGAGTGGCTT...................................................................................224.000.00-------------4.00---------------------------------------------------------------------------------------------------------------------------
..................................................................CTGGGCTGGGCTGGGGAGTGG......................................................................................2123.503.50----0.50------------------0.50------------------------------------------------0.500.50----------------------------1.00----------------------------0.50-----
.................................CTTGCTCCAGGAGATCGGTATGTAGGGG................................................................................................................2813.003.00--------------3.00--------------------------------------------------------------------------------------------------------------------------
.......................AGGCTGTGATCTTGCTCCAGGAGATCG...........................................................................................................................2713.003.001.00------------------2.00---------------------------------------------------------------------------------------------------------------------
................................TCTTGCTCCAGGAGATCG...........................................................................................................................1813.003.00--------------------------------------------------------------------2.00-----------------------------------------------------1.00--------------
.................................................................................................TGGTACTGACAGCTGAGCCGTTGCAGA.................................................2713.00126.003.00----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................CAGGGGTGCTGGACCAGCGGGAGTACC..........................2713.003.003.00----------------------------------------------------------------------------------------------------------------------------------------
................................................................................................GTGGTACTGACAGCTGAGCCGTTGCAG..................................................2712.002.00--------------------------------------------------1.00----------------------------------------------------------1.00---------------------------
...................................................................................................GTACTGACAGCTGAGCCGTTGCAG..................................................2412.002.00-2.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................TGGGCTGGGCTGGGGAGTGGC.....................................................................................2112.002.00-----------------------------2.00-----------------------------------------------------------------------------------------------------------
......................GAGGCTGTGATCTTGCTCCAGGAG...............................................................................................................................2412.002.00----------------------------------1.00---------------------------------------------------------------------------1.00--------------------------
.................................................................................................TGGTACTGACAGCTGAGCCGTTG.....................................................2312.002.00----1.00----------------------------------------------------------------------------------------1.00-------------------------------------------
......................GAGGCTGTGATCTTGCTCCAGGAGATCG...........................................................................................................................2812.002.00-----------1.00-------------------------------------------------------------------------------------------------------1.00---------------------
..................................................................................................GGTACTGACAGCTGAGCCGTTGCAGA.................................................2612.00193.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
...............AGTGGACGAGGCTGTGATC...........................................................................................................................................1912.002.00-2.00---------------------------------------------------------------------------------------------------------------------------------------
....................ACGAGGCTGTGATCTTGCTCCAGGAGATCG...........................................................................................................................3012.002.00----------------------------------------------------------------------2.00------------------------------------------------------------------
.................................................................................................TGGTACTGACAGCTGAGCCGTTGCCG..................................................262.000.00----1.00-------------------------------------------------------------------------------1.00----------------------------------------------------
.........CAAGGCAGTGGACGAGGC..................................................................................................................................................1812.002.002.00----------------------------------------------------------------------------------------------------------------------------------------
...................GACGAGGCTGTGATCT..........................................................................................................................................1612.002.00---------------------------1.00---1.00---------------------------------------------------------------------------------------------------------
...................GACGAGGCTGTGATCTT.........................................................................................................................................1711.001.00--------------------------------------------------------------------------1.00--------------------------------------------------------------
............................................................................................................................GGTGCTGGACCAGCGGGAGTACGT.........................241.000.00-------------------------------------------------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................CTGACTACCCTGGGGCAGCGCCTGGCTT281.000.00----------------------1.00------------------------------------------------------------------------------------------------------------------
...............AGTGGACGAGGCTGTCTT............................................................................................................................................181.000.00-----------------1.00-----------------------------------------------------------------------------------------------------------------------
...............AGTGGACGAGGCTGTGAT............................................................................................................................................1811.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------------------
...................GACGAGGCTGTGATCTTGCT......................................................................................................................................2011.001.00-------------------------------1.00---------------------------------------------------------------------------------------------------------
....AACATCAAGGCAGTGGACGAGGCTGT...............................................................................................................................................2611.001.00----------------------------------------------1.00------------------------------------------------------------------------------------------
...................GACGAGGCTGTGATCTTGCTCCAGGAGAT.............................................................................................................................2911.001.00------------------------------------------------------------------------------------------------------------------------1.00----------------
..................................................................................................GGTACTGACAGCTGAGCCGTTGCCG..................................................2511.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------------
......CATCAAGGCAGTGGACGAG....................................................................................................................................................1911.001.00------------------------------------------------1.00----------------------------------------------------------------------------------------
..........................................................................................................CAGCTGAGCCGTTGCAG..................................................1711.001.00--------------------------------------------------------------1.00--------------------------------------------------------------------------
........................................................AGGGGCTGGGCTGGGC.....................................................................................................1601.001.00------1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................GGGTGCTGGACCAGCGGGAGTACC..........................2411.001.00-----------------------------------------1.00-----------------------------------------------------------------------------------------------
..............................................ATCGGTATGTAGGGGCT..............................................................................................................1711.001.00-------------------------------------------------------------------------------1.00---------------------------------------------------------
...................................................................................................................CGTTGCAGGGGTGCTGGACCAG....................................2211.001.00---------------------------------------------------------------------------------------------------1.00-------------------------------------
..................................................................................................GGTACTGACAGCTGAGCCGTTGC....................................................2311.001.00--1.00--------------------------------------------------------------------------------------------------------------------------------------
.....ACATCAAGGCAGTGGACG......................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------------------------------1.00---------------
............................................................................................................................GGTGCTGGACCAGCGGGAGTACCT.........................2411.001.00-------------------------------------------------1.00---------------------------------------------------------------------------------------
..........AAGGCAGTGGACGAGGCTGTAAT............................................................................................................................................231.000.00----------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................................GGTACTGACAGCTGAGCCGT.......................................................2011.001.001.00----------------------------------------------------------------------------------------------------------------------------------------
..................................................................CTGGGCTGGGCTGGGGAGTGGCT....................................................................................2311.001.00---------------------------------------------------------------1.00-------------------------------------------------------------------------
........................................................AGGGGCTGGGCTGGGCTGGGCTT..............................................................................................231.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------------------
...........AGGCAGTGGACGAGGCTT................................................................................................................................................181.000.00------------------------------------------------------------------------------1.00----------------------------------------------------------
.......................AGGCTGTGATCTTGCTCCAGGAGAT.............................................................................................................................2511.001.00----------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................GCTGGGCTGGGCTGGGCTGGGGAGA........................................................................................251.000.00------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................................................................GGTACTGACAGCTGAGCCGTTGCAT..................................................2511.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................GTATGTAGGGGCTGGGCTGG.......................................................................................................2011.001.00----------------------------------------------------------------------------------------1.00------------------------------------------------
......................GAGGCTGTGATCTTGCTCCAGGAGATCGG..........................................................................................................................2911.001.00-------------------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................TACTGACAGCTGAGCCGTTGCAG..................................................2311.001.00---------------------1.00-------------------------------------------------------------------------------------------------------------------
........................................................AGGGGCTGGGCTGGGCTGCG.................................................................................................201.000.001.00----------------------------------------------------------------------------------------------------------------------------------------
.......................AGGCTGTGATCTTGCTCCAGGAGATCGG..........................................................................................................................2811.001.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------
.............................................................CTGGGCTGGGCTGGGCTGGGGAGA........................................................................................241.000.00----------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................................CTGGGCTGGGCTGGGGAGTGGCAAG..................................................................................251.000.00-------------------------------------------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................GCAGGGGTGCTGGACCAGCGGGT...............................231.000.00----------------------------------------------------------------------------------------------1.00------------------------------------------
..................GGACGAGGCTGTGATCTTGCTCCAGGAGATCGGGGT.......................................................................................................................361.000.00---------------------------------------------------------------------------1.00-------------------------------------------------------------
..................................................................................................................................GGACCAGCGGGAGTAC...........................1611.001.00-----------------------------------------1.00-----------------------------------------------------------------------------------------------
............................................................................................................................GGTGCTGGACCAGCGGGAG..............................1911.001.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................TGGTACTGACAGCTGAGCCGTTGCAA..................................................2611.0011.00--------------------------------------1.00--------------------------------------------------------------------------------------------------
........TCAAGGCAGTGGACGAG....................................................................................................................................................1711.001.001.00----------------------------------------------------------------------------------------------------------------------------------------
...........AGGCAGTGGACGAGGCTGTGGTTT..........................................................................................................................................241.000.00----------------------------------1.00------------------------------------------------------------------------------------------------------
..........AAGGCAGTGGACGAGGCT.................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------1.00-----------------------------------------
..................................................................................................GGTACTGACAGCTGAGCCGTTGCA...................................................2411.001.00--1.00--------------------------------------------------------------------------------------------------------------------------------------
.........................................................GGGGCTGGGCTGGGCTGGGCTA..............................................................................................221.000.00---------------------------------------------------------1.00-------------------------------------------------------------------------------
.....................CGAGGCTGTGATCTTGCTCCAGGAGA..............................................................................................................................2611.001.00-----------------------------------------------------------------------------------------1.00-----------------------------------------------
..................................................................................................GGTACTGACAGCTGAGCCGTTG.....................................................2211.001.00------------------------------------------------------------------------------------------------1.00----------------------------------------
............................................................................................................................................................TGGGGCAGCGCCTGGCTTGG201.000.00---------------------------------------------------------------------------------------------------------1.00-------------------------------
.............GCAGTGGACGAGGCTGTGAT............................................................................................................................................2011.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------------------
............................GTGATCTTGCTCCAGGAGATCGG..........................................................................................................................2311.001.00----------------------------------------------------------------------------------------------------------1.00------------------------------
.......................................................................CTGGGCTGGGGAGTGGCT....................................................................................1830.670.67--------------------------------------------0.33------------------------------------------------------------------------------------------0.33-
.............................................................CTGGGCTGGGCTGGGCTGGGGA..........................................................................................2250.600.60--0.20----------------0.20------------------------0.20--------------------------------------------------------------------------------------------
..............CAGTGGACGAGGCTGT...............................................................................................................................................1620.500.50-----------------------------------------------------------------------0.50-----------------------------------------------------------------
...................................................................TGGGCTGGGCTGGGGAGTGG......................................................................................2030.330.33------------------0.33----------------------------------------------------------------------------------------------------------------------
........................................................AGGGGCTGGGCTGGGCTGGGC................................................................................................2140.250.25----------------------------------------------------------------------------------------------------------------------------------------0.25
.........................................................................................................................................................CCCTGGGGCAGCGCC.....1580.120.12--------------------------------------------------------------------------0.12--------------------------------------------------------------

Antisense strand
TCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGTATGTAGGGGCTGGGCTGGGCTGGGCTGGGGAGTGGCTCTCGAGGGTGGTACTGACAGCTGAGCCGTTGCAGGGGTGCTGGACCAGCGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCT
.................................................................((..((((.(((((...((((((((....))))..))))..))))).))))...))....................................................
............................................................61............................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR037935(GSM510473)
293cand3. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038854(GSM458537)
MM653. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040010(GSM532895)
G529N. (cervix)
........................................................................................................................................................ACCCTGGGGCAGCGCCTGGG. 201.000.00-----------------------------------------------------------------------------------------------------------1.00-----------------------------
......................................................................................................................GTACTCCCGCTGGTCCAGCACCCCTGCA........................... 2811.001.00---------------------------------------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................AGTCAGGTACTCCCGCTGGTCCAGCACCCC..................... 3011.001.00---------------------------------------------------1.00-------------------------------------------------------------------------------------
..............................................................................................GCTGTCAGTACCACCC............................................................... 1640.250.25---------------------------------------------0.25-------------------------------------------------------------------------------------------