ID: uc003cqt.1_intron_3_0_chr3_47108609_r.5p
GENE: SETD2(3)
chr3:47120802-47121051-


(1)
AGO2.ip 		(9)
BRAIN 		(5)
BREAST 		(5)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
LIVER 		(2)
OTHER 		(2)
SKIN 		(3)
UTERUS

Sense strand
CTCTAAACATTCTGGTTTTGAATGAAGTCATTTTCACTTTACTCTTTTGGGTGAGCTCTTAATTCTGTTTCCCTAAAGACATAATGATCATGTTTCTATTGCTGCCCATGAAATTAGTTTTTTTAAAAAAGTCTTGATGCTGTTTAGGAAGTGATTTGGTTGTACAACTATCTTGAGAGGTGGGAGGGTGTATACATTATAGAATTTCCAAGCTAGAAGTGATCATTAAGGAATATTGTTATTCCCTTAG
...................................................................................................................................((((((......)))))).......((((((((((.((((((....)))))).....)))))).))))...................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................................................................................................................AGCTAGAAGTGATCAAAA......................1842.000.0042.00------------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGTT.....................................................2117.000.00-8.001.001.00-3.00--2.001.00-----------1.00---------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAGTT.....................................................2217.001.00--2.00-1.00-2.001.00--1.00--------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATTGTT.....................................................215.000.00-3.00-------2.00---------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATATTT.....................................................2214.001.00--3.00-----------------1.00----------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGGTT.....................................................224.000.00----1.00-1.00------1.00---------------1.00-
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGGGT.....................................................223.000.00--1.001.00--1.00------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATGGGT.....................................................213.000.00----------1.00-1.00---------------1.00--
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAG.......................................................2013.001.00--2.00-----1.00----------------------
..................................................................................................................................GTCTTGATGCTGTTTAGGA.....................................................................................................1912.002.00-----------2.00-------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAGTTA....................................................2312.001.00-1.00--1.00--------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAGT......................................................2112.001.00---1.00---1.00-----------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGGT.....................................................212.000.00-2.00-----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGGT......................................................212.000.00--2.00----------------------------
..................................................................................................................................................................................................................AGCTAGAAGTGATCACAA......................182.000.002.00------------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGT......................................................202.000.00-----1.00---------1.00---------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATGGT......................................................202.000.00-1.00---------------------1.00-------
................................................................................................................................................................................GAGGTGGGAGGGTGTATATTT.....................................................211.000.00----------------1.00--------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGTGA....................................................221.000.00-1.00-----------------------------
.............................................................................................................................................................................TGAGAGGTGGGAGGGTGTATACA......................................................2311.001.00--------------------------1.00----
................................................................................................................................................................................GAGGTGGGAGGGTGTATGGTT.....................................................211.000.00-1.00-----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGGTA.....................................................221.000.00-------1.00-----------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAATTT....................................................221.000.00------------1.00------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGTTT.....................................................221.000.00----------1.00--------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATT........................................................181.000.00------------------1.00------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAT.......................................................2011.001.00----1.00--------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATA........................................................1911.001.00----1.00--------------------------
..................................................................................................................................................................................GGTGGGAGGGTGTATAGTT.....................................................191.000.00---------------------------1.00---
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGGTT....................................................221.000.00-1.00-----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGTT......................................................211.000.00----1.00--------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATATTG.....................................................211.000.00---1.00---------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATCGTT.....................................................221.000.00--1.00----------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAG.......................................................191.000.00-----1.00-------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATAGTTT....................................................2311.001.00---1.00---------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTA..........................................................1711.001.00------1.00------------------------
......................................................................................................................................................................................................ATAGAATTTCCAAGCTAGAAGTGACCA.........................271.000.00----------------------1.00--------
......................................................................................................................................................................................................ATAGAATTTCCAAGCTAGAAGT..............................2211.001.00-------------------------1.00-----
..................................................................................................................................................................................................................AGCTAGAAGTGATCAGAA......................181.000.001.00------------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGTGT.....................................................221.000.00---1.00---------------------------
..................................................................................................................................................................................................................AGCTAGAAGTGATCAATA......................181.000.001.00------------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATATG......................................................2111.001.00--1.00----------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATTGGT.....................................................211.000.00-1.00-----------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGATT....................................................221.000.00-1.00-----------------------------
.....................................................................................................................................................................AACTATCTTGAGAGGTGGGAGG...............................................................2211.001.00------------------------1.00------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAGAT.....................................................211.000.00-1.00-----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATATT......................................................2111.001.00--1.00----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATGGAT.....................................................221.000.00--1.00----------------------------
.................................................................................................................................................................................AGGTGGGAGGGTGTATAGTTA....................................................211.000.00-1.00-----------------------------
.................................................................................................................................................................................AGGTGGGAGGGTGTATAGT......................................................191.000.00-1.00-----------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTATAAAT.....................................................211.000.00-1.00-----------------------------
.................................................................................................................................................................................AGGTGGGAGGGTGTATATT......................................................191.000.00-1.00-----------------------------
...............................................................................................................................................................................AGAGGTGGGAGGGTGTATTGTT.....................................................221.000.00--1.00----------------------------
................................................................................................................................................................................GAGGTGGGAGGGTGTAAAGT......................................................201.000.00-----------------1.00-------------
.........................................................................................ATGTTTCTATTGCTGCC................................................................................................................................................1720.500.50------------------------------0.50

Antisense strand
CTCTAAACATTCTGGTTTTGAATGAAGTCATTTTCACTTTACTCTTTTGGGTGAGCTCTTAATTCTGTTTCCCTAAAGACATAATGATCATGTTTCTATTGCTGCCCATGAAATTAGTTTTTTTAAAAAAGTCTTGATGCTGTTTAGGAAGTGATTTGGTTGTACAACTATCTTGAGAGGTGGGAGGGTGTATACATTATAGAATTTCCAAGCTAGAAGTGATCATTAAGGAATATTGTTATTCCCTTAG
...................................................................................................................................((((((......)))))).......((((((((((.((((((....)))))).....)))))).))))...................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................ATGCTGTTTAGGAAGTAAAG.............................................................................................. 201.000.00--------------1.00----------------
.....................................................................................................................................................................................GGGAGGGTGTATACACC.................................................... 171.000.00-------------------1.00-----------