ID: uc003cqs.2_intron_11_0_chr3_47129738_r.3p
GENE: (9)
chr3:47129688-47129937-


(1)
AGO2.ip
(2)
B-CELL
(2)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES

Sense strand
TATACCACTTTATACTTTCATCAACAGTAGACTTGTTATTATCAGCCTTCTTAACTTTTTCCCCCAGTCTAGTACTTTCCCAGTTTGGTCTTCATTTGTGTTTTCCTGATAATTGATAAGGTTGAGCAACTTTTTGGGTTTTTGGTTTTTTTTTTTGTTGTTGTTGTTTTATAAAAAGGTATTTTTATTTGCTGTGGTAGGTGGATGGAGAGCTAGAAGCTCTGATGGAAAATGGTGAGGGTCTCTCTGA
.....................................................................................................................................................(((((((((............)))))))))....(((((((((....))))))))).............................................
......................................................................................................................................135....................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR040008(GSM532893)
G727N. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGC...........................................................................................2059.000.0049.0010.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGC...........................................................................................2127.000.0018.009.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGCTC.........................................................................................2312.000.008.004.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGCT..........................................................................................2211.000.008.003.00-------------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCT..........................................................................................2110.000.004.006.00-------------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCTC.........................................................................................227.000.003.004.00-------------------------
....................................................................................................................................................................................ATTTTTATTTGCTGTGGTAGAG................................................223.000.00-------2.00-----1.00-------------
.....................................................................................................................................................................................................................TAGAAGCTCTGATGGAAAAT.................2012.002.00---2.00-----------------------
...............................................................................................................................................................................................................GAGAGCTAGAAGCTCTGATGGAAAA..................2512.002.00--2.00------------------------
..................................................................................................................................................................................................................AGCTAGAAGCTCTGATGGA.....................1912.002.00-----------------1.00----1.00----
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGTTGG.........................................................................................232.000.001.001.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGGC..........................................................................................222.000.001.001.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGCCC.........................................................................................232.000.002.00--------------------------
......................................................................................................................................................................................................................AGAAGCTCTGATGGAAAATGGTGA............2411.001.00-----------------------1.00---
.............................................................................................................................................TTGGTTTTTTTTTTTGCGC..........................................................................................191.000.00-1.00-------------------------
.................................................................................................................................................TTTTTTTTTTTGTTGTATAG.....................................................................................201.000.00--------------1.00------------
.................................................................................................................................................TTTTTTTTTTTGTTGTTCCCC....................................................................................211.000.00---------1.00-----------------
....................................................................................................................................................................................................................CTAGAAGCTCTGATGGAAAATGG...............2311.001.00-------------------1.00-------
......................................................................................................................................................................................................................AGAAGCTCTGATGGAAAAT.................1911.001.00--------------------1.00------
....................................................................................................................................................................................................................CTAGAAGCTCTGATGGAAAATGGTGA............2611.001.00-------------------------1.00-
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCGC.........................................................................................221.000.00-1.00-------------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGGT..........................................................................................211.000.001.00--------------------------
....................................................................................................................................TTTGGGTTTTTGGTTTTTTTTTTTCC............................................................................................261.000.00-1.00-------------------------
..........................................................................................................................................................................................................GGATGGAGAGCTAGAAGCTCTGAT........................2411.001.00------1.00--------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCA..........................................................................................211.000.001.00--------------------------
..............................................................................................................................................TGGTTTTTTTTTTTGTTGTTGTTTTTT.................................................................................271.000.00-1.00-------------------------
.........................................................................................................................................GTTTTTGGTTTTTTTTTTTCGG...........................................................................................221.000.001.00--------------------------
.................................................................................................................................................................................................GTGGTAGGTGGATGGAGAGC.....................................2011.001.00---------------1.00-----------
.................................................................................................................................................TTTTTTTTTTTGTTGTTGTTGTCTTG...............................................................................261.000.001.00--------------------------
...................................................................................................................................TTTTGGGTTTTTGGTTTTTTTTTTTTTT...........................................................................................281.000.00-1.00-------------------------
...................................................................................................................................................................................................................GCTAGAAGCTCTGATGGCAAA..................211.000.00----------------1.00----------
.....................................................................................................................................................................................................................TAGAAGCTCTGATGGAAAATGGTG.............2411.001.00--1.00------------------------
..................................................................................................................................TTTTTGGGTTTTTGGTTTTCTAG.................................................................................................231.000.00-1.00-------------------------
............................................................................................................................................................................................................................TCTGATGGAAAATGGTGAGGGTCTCT....2611.001.00------------------------1.00--
...............................................................................................................................................................................AAGGTATTTTTATTTGCTGTGGCAGG.................................................261.000.001.00--------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGTGGAG........................................................................................241.000.00-1.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGCC..........................................................................................221.000.001.00--------------------------
.........................................................................................................................................GTTTTTGGTTTTTTTTTTCGG............................................................................................211.000.001.00--------------------------
.................................................................................................................................................TTTTTTTTTTTGTTGTTGGGTG...................................................................................221.000.00-1.00-------------------------
........................................................................................................................................................................................................GTGGATGGAGAGCTAGAAG...............................1911.001.00-----1.00---------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCTT.........................................................................................221.000.00-1.00-------------------------
..........................................................................................................................................................................................................GGATGGAGAGCTAGAAGCTCTGA.........................2311.001.00------1.00--------------------
..................................................................................................................................................TTTTTTTTTTGTTGTTGTTGTACGG...............................................................................251.000.001.00--------------------------
....................................................................................................................................TTTGGGTTTTTGGTTTTTTTTCCTT.............................................................................................251.000.001.00--------------------------
...................................................................................................................................TTTTGGGTTTTTGGTTTTTTTTTTTCTCC..........................................................................................291.000.00-1.00-------------------------
....................................................................................................................................TTTGGGTTTTTGGTTTTTTTAG................................................................................................221.000.001.00--------------------------
........................................................................................................................................GGTTTTTGGTTTTTTTTCCCC.............................................................................................211.000.001.00--------------------------
............................................................................................................................................TTTGGTTTTTTTTTTTGCGC..........................................................................................201.000.001.00--------------------------
................................................................................................................................ACTTTTTGGGTTTTTGGTTTTTTTGTT...............................................................................................271.000.00-1.00-------------------------
.........................................................................................................................................GTTTTTGGTTTTTTTTTTCTGG...........................................................................................221.000.00--------1.00------------------
...................................................................................................................................................TTTTTTTTTGTTGTTGTTGTTTCGAG.............................................................................261.000.001.00--------------------------
......................................................................................................................................TGGGTTTTTGGTTTTTTTTTTCCTC...........................................................................................251.000.00-1.00-------------------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGCTGG.........................................................................................231.000.00-1.00-------------------------
.....................................................................................................................................TTGGGTTTTTGGTTTTTTTTTTTCTCC..........................................................................................271.000.001.00--------------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCCC.........................................................................................221.000.001.00--------------------------
.........................................................................................................................................GTTTTTGGTTTTTTTTTTGGG............................................................................................211.000.00-1.00-------------------------
...................................................................TCTAGTACTTTCCCAGTTTGGTCT...............................................................................................................................................................2411.001.00---------1.00-----------------
..........................................................................................................................................TTTTTGGTTTTTTTTTTTGGGCT.........................................................................................231.000.00-1.00-------------------------
....................................................................................................................................................TTTTTTTTGTTGTTGTTGTCGC................................................................................221.000.001.00--------------------------
.....................................................................................................................................................................................................................TAGAAGCTCTGATGGAAAATGGT..............2311.001.00------------------1.00--------
.....................................................................................................................................................................................................................TAGAAGCTCTGATGGAAAATGGTGAGGGTCT......3111.001.00-----1.00---------------------
.............................................................................................................................................................................................................................CTGATGGAAAATGGTGAGGG.........2011.001.00-----------1.00---------------
........................................................................................................................................GGTTTTTGGTTTTTTTTTTGG.............................................................................................211.000.001.00--------------------------
...........................................................................................................................................TTTTGGTTTTTTTTTTTGGCC..........................................................................................211.000.00-1.00-------------------------
......................................................................................................................................TGGGTTTTTGGTTTTTTTTTCC..............................................................................................221.000.00-1.00-------------------------
..................................................................................................................................................................................................................AGCTAGAAGCTCTGATGGAAAATGGTGAGGGTCT......3411.001.00----------1.00----------------
......................................................................................................................................................................................................AGGTGGATGGAGAGCGAA..................................181.000.00---------------------1.00-----
......................................................................................................................................TGGGTTTTTGGTTTTTTTTTTTGTTTGC........................................................................................281.000.001.00--------------------------
.....................................................................................................................................TTGGGTTTTTGGTTTTGTGT.................................................................................................201.000.00------------1.00--------------
.........................................................................................................................................GTTTTTGGTTTTTTTTTTTCTGG..........................................................................................231.000.00--------1.00------------------
........................................................................................................................................................................................................................AAGCTCTGATGGAAAATGGTGAGGGT........2611.001.00--1.00------------------------
................................................................................................................................ACTTTTTGGGTTTTTGGTTTTTTTTTCC..............................................................................................281.000.001.00--------------------------
................................................................................................................................ACTTTTTGGGTTTTTGGTTTTTTTTTTTGC............................................................................................301.000.001.00--------------------------
...................................................................................................................................TTTTGGGTTTTTGGTTTTTTTTTCAG.............................................................................................261.000.00-1.00-------------------------
.......................................TATCAGCCTTCTTAA....................................................................................................................................................................................................1590.110.11--------------------------0.11

Antisense strand
TATACCACTTTATACTTTCATCAACAGTAGACTTGTTATTATCAGCCTTCTTAACTTTTTCCCCCAGTCTAGTACTTTCCCAGTTTGGTCTTCATTTGTGTTTTCCTGATAATTGATAAGGTTGAGCAACTTTTTGGGTTTTTGGTTTTTTTTTTTGTTGTTGTTGTTTTATAAAAAGGTATTTTTATTTGCTGTGGTAGGTGGATGGAGAGCTAGAAGCTCTGATGGAAAATGGTGAGGGTCTCTCTGA
.....................................................................................................................................................(((((((((............)))))))))....(((((((((....))))))))).............................................
......................................................................................................................................135....................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR040008(GSM532893)
G727N. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................TATAAAAAGGTATTTGGT............................................................... 181.000.00----1.00----------------------
.......................................................................................................................GGTTGAGCAACTTTTAG.................................................................................................................. 171.000.00----1.00----------------------