ID: uc003cqs.2_intron_10_0_chr3_47127805_r.5p
GENE: (10)
chr3:47129403-47129652-


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(24)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(1)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(19)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TTAGAATTGAAACTTTGGAGCAGAAACTTACCTGTCTGGAACTCATACAGGTGAACACTTTAATGTTTGTTTTTTATTTCTGGTTTTGTGGTGGGAATGAATGAATGAAGATGAATGAAGAAGGAATAATTCTGATAAGAGTTAGTCTTATTTTATTTATTTATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGATGGGGTCTTGTTCTGTCATCCAGGCTGGAGTGCAGTGGTGCAGTCTCGG
......................................................................................................((((((((((((((((((.((((.(((((((....))))))).)))).)))))))))))..)))))))................................................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577744(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
.................................GTCTGGAACTCATACAG........................................................................................................................................................................................................17121.0021.00------3.00--3.002.001.001.001.001.00-1.00-----1.001.00--1.00-------1.00--1.00--------1.00--------1.00--1.00------------
..........................................................................................................GAAGATGAATGAAGAAGGAATAATTCTGATA.................................................................................................................31112.0012.00--12.00--------------------------------------------------------------------
................................TGTCTGGAACTCATACAG........................................................................................................................................................................................................1817.007.00------1.00-------------2.00--1.00----------------1.00----1.00-------------------1.00-----
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTCG..........................................................256.000.00-6.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCCTT..........................................................256.000.006.00----------------------------------------------------------------------
........................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTCTCG..........................................................246.000.003.003.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTCTG.......................................................294.000.00-4.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTCTT...........................................................294.000.00-4.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGGCTC..303.000.001.002.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTCG..........................................................263.000.002.001.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTCGAG........................................................283.000.001.002.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTAC..........................................................253.000.003.00----------------------------------------------------------------------
..............................................................................................................................................................ATTTATTTATTTGTTTGTTTGTTTGACGG...............................................................293.000.002.001.00---------------------------------------------------------------------
........................AACTTACCTGTCTGGAACTCATACAG........................................................................................................................................................................................................2613.003.00-------------1.00------------------------1.00-----------------------1.00--------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTCTT...........................................................283.000.001.002.00---------------------------------------------------------------------
....AATTGAAACTTTGGAGCAGAAACTTACC..........................................................................................................................................................................................................................2813.003.00-----------1.00-------2.00---------------------------------------------------
........................................................................................................................................................................................................................TCATCCAGGCTGGAGTGCAGTGCGCG........263.000.001.002.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGGC....283.000.001.002.00---------------------------------------------------------------------
.................................................................................................................................................TCTTATTTTATTTATTTATTTATTTG...............................................................................2632.672.67---0.331.67--0.67---------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTCTC.............................................................262.000.00-2.00---------------------------------------------------------------------
.........................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTGTTTGTCTGG..................................................312.000.002.00----------------------------------------------------------------------
...........................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTGC..................................................292.000.00-2.00---------------------------------------------------------------------
....................................................................................................................................................TATTTTATTTATTTATTTATTTGTTCTGC.........................................................................292.000.00-2.00---------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTCGAC............................................................252.000.00-2.00---------------------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCAC........................................172.000.00----------1.00----1.00-------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTGG......................................................292.000.002.00----------------------------------------------------------------------
......................................................................................................................................................TTTTATTTATTTATTTATTTGTTTGTTCG.......................................................................292.000.002.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTTTCTCC....................................................322.000.00-2.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCTCG.........................................................272.000.00-----2.00-----------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTC.........................................................272.000.001.001.00---------------------------------------------------------------------
........................................................................................................................................................................................................................TCATCCAGGCTGGAGTGCAGTCTAC.........252.000.002.00----------------------------------------------------------------------
...................................................................................................................................................................................................................TTCTGTCATCCAGGCTGGAGTGAA...............242.000.00------------------2.00----------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTCATG.............................................................................242.000.00---1.001.00------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCTC..........................................................262.000.002.00----------------------------------------------------------------------
........................................................................................................................................................................................................................TCATCCAGGCTGGAGTGCAGTGCAAG........262.000.002.00----------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCCTG......................................................292.000.00-2.00---------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTTCGTT.........................................................302.000.002.00----------------------------------------------------------------------
......................................................................................................GAATGAAGATGAATGAAGAAGGAATA..........................................................................................................................2612.002.00------------------------2.00----------------------------------------------
........................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTGTCCGC......................................................282.000.002.00----------------------------------------------------------------------
........................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTGTCTCG......................................................282.000.002.00----------------------------------------------------------------------
...................................................................................................................................................TTATTTTATTTATTTATTTATTTCTCG............................................................................272.000.00---1.00----1.00--------------------------------------------------------------
.............................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTGTCTGC..................................................272.000.00-2.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCG...........................................................252.000.002.00----------------------------------------------------------------------
....................................................................................................................................................................TTATTTGTTTGTTTGTTTGTTTGTTTCG..........................................................282.000.001.001.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTTCAG......................................................302.000.00-2.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTTA......................................................292.000.00-2.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTCC......................................................292.000.00-2.00---------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTAG............................................................252.000.002.00----------------------------------------------------------------------
.............................................................................................................................................................TATTTATTTATTTGTTTGTTTGTCTGT..................................................................272.000.002.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGGTCC..302.000.001.001.00---------------------------------------------------------------------
...............................................................................................................................................................TTTATTTATTTGTTTGTTTGTTTGCCTG...............................................................282.000.002.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTTTCAAG........................................................322.000.001.001.00---------------------------------------------------------------------
.......TGAAACTTTGGAGCAGAAACTTACC..........................................................................................................................................................................................................................2512.002.00-----------1.00------------------------------------1.00----------------------
..................................................................................................................................................CTTATTTTATTTATTTATTTATTTG...............................................................................2581.251.25---0.250.25--0.250.50--------------------------------------------------------------
.................................................................................................................................................TCTTATTTTATTTATTTATTCTG..................................................................................231.000.00----1.00------------------------------------------------------------------
...............................................................................................................................................................TTTATTTATTTGTTTGTTTGTTTGTTTGCC.............................................................301.000.00-1.00---------------------------------------------------------------------
...........................................................................................................AAGATGAATGAAGAAATGT............................................................................................................................191.000.00-----------------------------1.00-----------------------------------------
..................................................................................................................................................CTTATTTTATTTATTTATTTATTAAG..............................................................................261.000.00-------1.00---------------------------------------------------------------
.......................AAACTTACCTGTCTGGAACTCATACAG........................................................................................................................................................................................................2711.001.00----------------1.00------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCAGAT......................................191.000.00------------------------------1.00----------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTCTAG........................................................281.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGACGG...............................................................251.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTTGTGACG..........................................................................271.000.00--------1.00--------------------------------------------------------------
.....ATTGAAACTTTGGAGCAGAAACTTACCTGTC......................................................................................................................................................................................................................3111.001.00---------------------------1.00-------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTTTCGG.....................................................311.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTG.........2301.001.00--------------------------------------------------1.00--------------------
....................................................................................................................................................................TTATTTGTTTGTTTGTTTGTTTGTTTAC..........................................................281.000.001.00----------------------------------------------------------------------
......TTGAAACTTTGGAGCAGAA.................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------1.00-------------
.TAGAATTGAAACTTTGGAGCAGA..................................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCTG..........................................................261.000.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTCTTC........................................................281.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTGTTTGTTTGTTTGTTC................................................................321.000.001.00----------------------------------------------------------------------
.......................................................................................................................................................TTTATTTATTTATTTATTTGTTTGGG.........................................................................261.000.001.00----------------------------------------------------------------------
................................................................................................................................................................TTATTTATTTGTTTGTTTGTTTGTTTGTCT............................................................301.000.001.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTCT............................................................281.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTTCATT.........................................................311.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTTGTTTGTTCACT.....................................................................321.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................................................................................................GAGTGCAGTGGTGCAGTCTCG.2101.001.00------------------------------------1.00----------------------------------
.....................AGAAACTTACCTGTCTGGAACTCATACAG........................................................................................................................................................................................................2911.001.00------------1.00----------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCGT..........................................................261.000.00-1.00---------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTCGTT............................................................251.000.00-1.00---------------------------------------------------------------------
......TTGAAACTTTGGAGCAG...................................................................................................................................................................................................................................1711.001.00--------------1.00--------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTCGG.........................................................271.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTCGTT.............................................................271.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTCATT.............................................................241.000.00-1.00---------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTTTCAAG........................................................291.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTAGTT..........................................................261.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTCAAA.............................................................................241.000.00-------1.00---------------------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTTGTTTCTG.........................................................................281.000.001.00----------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTCTTG..............................................................251.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................TATTTTATTTATTTATTTCCG.................................................................................211.000.00----1.00------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCATT.........................................................271.000.001.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGTGCAGTCCGGC281.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................TTTATTTATTTGTTTGTTTGTTCGT..................................................................251.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................CTTATTTTATTTATTTATTTATTTCCTC............................................................................281.000.00---1.00-------------------------------------------------------------------
.....................................................................................................................................................ATTTTATTTATTTATTTATTTGTTTGCTTG.......................................................................301.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTATTG.........................................................271.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................TTATTTATTTATTTATTTGTTTGTTCATG.....................................................................291.000.001.00----------------------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCCC........................................171.000.00----------------------1.00------------------------------------------------
...GAATTGAAACTTTGGAGCAGAAACT..............................................................................................................................................................................................................................2511.001.00--------------------------------1.00--------------------------------------
....................................................................................................................................................................................................TTAGATGGGGTCTTGTTGCTC.................................211.000.00---------------------------------1.00-------------------------------------
....................................................................................................................................................TATTTTATTTATTTATTTATTTCAAT............................................................................261.000.00--------1.00--------------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCCCAT......................................191.000.00------------------------------------------1.00----------------------------
.TAGAATTGAAACTTTGGAGCAGAAACTTACCT.........................................................................................................................................................................................................................3211.001.00-------------------------------------------------1.00---------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTC.............................................................271.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTTCC...........................................................281.000.00-1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGTCCCG.311.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTGTTTGTTTGTCT....................................................................281.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGGCAG.......251.000.001.00----------------------------------------------------------------------
........................................................................................................................AAGGAATAATTCTGATAAGAG.............................................................................................................2111.001.00-------------------------------1.00---------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCTTC.........................................................271.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTCGAG.............................................................271.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................................................................................TCTGTCATCCAGGCTGGAGAACC...............231.000.00-----------------------------------1.00-----------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGGGC...291.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................TTATTTTATTTATTTATTTATTTGTTTTATC........................................................................311.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTTTGGG.....................................................311.000.001.00----------------------------------------------------------------------
................................................................................................................................................................TTATTTATTTGTTTGTACAG......................................................................201.000.00-----------------1.00-----------------------------------------------------
..............................................................................................................................................................ATTTATTTATTTGTTTGTTTGTTTGTCTG...............................................................291.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTTCTG..........................................................271.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTGTTTGTTAGC..................................................321.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTGTTTGTTTGGTC....................................................................281.000.001.00----------------------------------------------------------------------
.......TGAAACTTTGGAGCAGAAAC...............................................................................................................................................................................................................................2011.001.00----------------------------1.00------------------------------------------
...............................................................................................................................................AGTCTTATTTTATTTATTTATTTATTTG...............................................................................2811.001.001.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTCTA..............................................................261.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTCATT.............................................................271.000.001.00----------------------------------------------------------------------
..............................................................................................................................................................................GTTTGTTTGTTTGTTTGTTTGTTTAGATGGG.............................................3111.001.00-------------------------1.00---------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTTTACTT........................................................311.000.001.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTCGGG.............................................................271.000.001.00----------------------------------------------------------------------
.................................................................................................................................................TCTTATTTTATTTATTTATTTATTTCGTG............................................................................291.000.00-------1.00---------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTTTGTTCT.......................................................301.000.00-1.00---------------------------------------------------------------------
..............................................................................................................................................................................GTTTGTTTGTTTGTTTGTTTGTTTAGATGGGG............................................3211.001.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................CATCCAGGCTGGAGTGCAGTGGGACG.......261.000.00---------------------------------------1.00-------------------------------
................................................................................................................................................................TTATTTATTTGTTTGTTTGTTTGTTCGAG.............................................................291.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................................................................TCATCCAGGCTGGAGTGCAGTGACGG........261.000.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTCCTG......................................................301.000.00-1.00---------------------------------------------------------------------
................................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTAGATGGGGC...........................................311.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTGTTTGTCCTT..................................................311.000.00-1.00---------------------------------------------------------------------
............................................................................................................................................................TTATTTATTTATTTGTTTCTG.........................................................................211.000.00---1.00-------------------------------------------------------------------
...GAATTGAAACTTTGGAGCAGAAACTTA............................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------1.00---------
.......................AAACTTACCTGTCTGGAACTCAC............................................................................................................................................................................................................231.000.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................TGTCATCCAGGCTGGAGTGCAGCGTC..........261.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGTCACG.311.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................................................................TGTCATCCAGGCTGGAGTGCATGT............241.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGTCCCGG321.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTAGTTTC..............................................291.000.00-1.00---------------------------------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTGTTTGTTTGTTCGC..................................................................301.000.001.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTCCC.................................................................231.000.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGTTTCTC.....................................................311.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTGTTTGTCTTA..................................................311.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTCGAG............................................................271.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................................TTTGTTTGTTTGTTTGTTTAGATGGGGCC..........................................291.000.001.00----------------------------------------------------------------------
.............................ACCTGTCTGGAACTCTTA...........................................................................................................................................................................................................181.000.00-------------------------------------------1.00---------------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGTGCAGGTCG..261.000.00-1.00---------------------------------------------------------------------
...........................................................................................................................................AGTTAGTCTTATTTTATTTATTTATTCATT.................................................................................301.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTTGCG.........................................................271.000.001.00----------------------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCACAT......................................191.000.00---------------1.00-------------------------------------------------------
....................................................................................................................................................TATTTTATTTATTTATTTATTTCGCG............................................................................261.000.001.00----------------------------------------------------------------------
...GAATTGAAACTTTGGAGCAGAAA................................................................................................................................................................................................................................2311.001.00-------------------------------------------------------------------1.00---
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTTTACTT........................................................321.000.001.00----------------------------------------------------------------------
...................................................................................................................................................TTATTTTATTTATTTATTCTAG.................................................................................221.000.00----1.00------------------------------------------------------------------
..........................................................................................................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTCTGC..................................................301.000.00-1.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGTGCAGTCGGG.271.000.001.00----------------------------------------------------------------------
..............................................................................................................................................................ATTTATTTATTTGTTTGTTTGTTTGTTCGGG.............................................................311.000.001.00----------------------------------------------------------------------
.......................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTTTGTCCT...................................................321.000.001.00----------------------------------------------------------------------
......................................................................................................................................................................ATTTGTTTGTTTGTTTGTTTGTTCAT..........................................................261.000.001.00----------------------------------------------------------------------
.................................................................................................................................................................TATTTATTTGTTTGTTTGTTTGTTTACTG............................................................291.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTCCTG.............................................................261.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................GTTTGTTTGTTTAGATGGAT............................................201.000.00---------------------------------------------------1.00-------------------
....................................................................................................................................................................TTATTTGTTTGTTTGTTTGTTTCGAG............................................................261.000.00-1.00---------------------------------------------------------------------
...........................................................................................................AAGATGAATGAAGAAGGAATAATT.......................................................................................................................2411.001.00-----------------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................TCCAGGCTGGAGTGCAGTGGTGCAGGCTC..291.000.001.00----------------------------------------------------------------------
..............................................................................................................................................................ATTTATTTATTTGTTTGTTTGTTTGTTCTG..............................................................301.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTTTAC..........................................................271.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCA.......2501.001.00----------------------------------------------------------------1.00------
........................................................................................................................................................TTATTTATTTATTTATTTGTTTGTTTCAG.....................................................................291.000.001.00----------------------------------------------------------------------
......TTGAAACTTTGGAGCAGAAACTTACCTGTCTG....................................................................................................................................................................................................................3211.001.00------------------------------------------------------------1.00----------
......................................................................................................................................................TTTTATTTATTTATTTATTTGTTTGTTCGG......................................................................301.000.001.00----------------------------------------------------------------------
....................................................................................................................................................TATTTTATTTATTTATTTATATAG..............................................................................241.000.00---1.00-------------------------------------------------------------------
......TTGAAACTTTGGAGCAGAAACT..............................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------1.00-----------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTTTGAGTC.......................................................301.000.001.00----------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTTTCAAG........................................................311.000.001.00----------------------------------------------------------------------
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTCATC............................................................271.000.001.00----------------------------------------------------------------------
..................................................................................................................................................................ATTTATTTGTTTGTTTGTTTGTTTGTCTC...........................................................291.000.001.00----------------------------------------------------------------------
...GAATTGAAACTTTGGAGCAGAAACTTACCTGTCTGG...................................................................................................................................................................................................................3611.001.00------------------------------------------------------------------1.00----
...................................................................................................................................................................TTTATTTGTTTGTTTGTTTGTTTGTTCT...........................................................281.000.001.00----------------------------------------------------------------------
.................................................................................................................................................TCTTATTTTATTTATTTATCTTG..................................................................................231.000.00-----1.00-----------------------------------------------------------------
....................................................................................................................................................................TTATTTGTTTGTTTGTTTGTTTGTTTACTT........................................................301.000.00-1.00---------------------------------------------------------------------
.....................AGAAACTTACCTGTCTGGAACTCATACAGA.......................................................................................................................................................................................................3011.001.00-----------------------------------------1.00-----------------------------
..............................................................................................................................................................ATTTATTTATTTGTTTGTTTGCCTG...................................................................251.000.00-1.00---------------------------------------------------------------------
......TTGAAACTTTGGAGCAGA..................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00-----------------
.....................................................................................................................................................................TATTTGTTTGTTTGTTTGTTTGTCTTG..........................................................271.000.001.00----------------------------------------------------------------------
.................................................................................................................................................................................................TGTTTAGATGGGGTCTTGCT.....................................201.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................TCTTATTTTATTTATTTATTTATCTG...............................................................................261.000.00---1.00-------------------------------------------------------------------
...........................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTTTACCCC...............................................321.000.00-1.00---------------------------------------------------------------------
..................AGCAGAAACTTACCTGTCTGG...................................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00----------------
..........................................................................................................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTCC....................................................281.000.00-----1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................................ATCCAGGCTGGAGTGCAGTGGTGCAGGTC...291.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTAGATGGGG............................................3120.500.500.50----------------------------------------------------------------------
.................................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTAGATGGGG............................................2920.500.500.50----------------------------------------------------------------------
...................................................................................................................................................................................TTTGTTTGTTTGTTTGTTTAGATGGG.............................................2630.330.330.33----------------------------------------------------------------------
.....ATTGAAACTTTGGAGC.....................................................................................................................................................................................................................................1630.330.33--------------------------------------------------------------------0.33--

Antisense strand
TTAGAATTGAAACTTTGGAGCAGAAACTTACCTGTCTGGAACTCATACAGGTGAACACTTTAATGTTTGTTTTTTATTTCTGGTTTTGTGGTGGGAATGAATGAATGAAGATGAATGAAGAAGGAATAATTCTGATAAGAGTTAGTCTTATTTTATTTATTTATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGATGGGGTCTTGTTCTGTCATCCAGGCTGGAGTGCAGTGGTGCAGTCTCGG
......................................................................................................((((((((((((((((((.((((.(((((((....))))))).)))).)))))))))))..)))))))................................................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577744(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGGGC. 2611.000.0011.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGGGGC.. 254.000.004.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTCTGGGC 284.000.003.00-------------------------------------------------------1.00--------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTCTGGGT 282.000.002.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................CATCCAGGCTGGAGTGCAGTGGTGCAGTGC... 302.000.00-2.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGTGCAGTTAGC. 272.000.002.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTCTCGGGGG 301.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGCCC. 261.000.001.00----------------------------------------------------------------------
....................................................................................TTTGTGGTGGGAATGCTCG................................................................................................................................................... 191.000.00---------------------1.00-------------------------------------------------
.................................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTAGATG............................................... 261.000.00---------------------1.00-------------------------------------------------
....................................................................................................................GAAGAAGGAATAATTCTTC................................................................................................................... 191.000.00---------------------------------------------------------------1.00-------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGGT.. 251.000.001.00----------------------------------------------------------------------
.............................................................................................................................................................................................................................CAGGCTGGAGTGCAGTGGTGCAGTTGAC. 281.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................CATCCAGGCTGGAGTGCAGTGGTGCAGTG.... 291.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGGGGT.. 251.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGGGA. 261.000.001.00----------------------------------------------------------------------
............................................................................................................................................................................................................................CCAGGCTGGAGTGCAGTGGTGCAGTCTGG. 291.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGGC.. 251.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGGAC. 261.000.00-1.00---------------------------------------------------------------------
..............................................................................................................................................................................GTTTGTTTGTTTGTTTGTTTGTTTAGATG............................................... 291.000.00--------------------------------------------1.00--------------------------
...........................................................................................................................................................................................................................TCCAGGCTGGAGTGCAGTGGTGCAGTCTAGA 311.000.001.00----------------------------------------------------------------------
..............................................ACAGGTGAACACTTTATG.......................................................................................................................................................................................... 181.000.00-----------------1.00-----------------------------------------------------
.............................................................................................................................................................................................................................CAGGCTGGAGTGCAGTGGTGCAGTCTACG 291.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAGTGATG. 261.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................................................................................TGGAGTGCAGTGGTGCAGTCTCTG 241.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGGAGTGCAGTGGTGCAGTGGGC. 241.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................CCGAGACTGCACCACTGCACTCCAGCCTGGATG 3340.250.25-----0.25-----------------------------------------------------------------
..........................................................................................................................................................................................................AGCCTGGATGACAGAACAAGACCCC....................... 2550.200.20---------------------------------------------------------------------0.20-
........................................................................................................................................................................................................TGGATGACAGAACAAGACCCCAT........................... 2360.170.17----------------------------------------------------------------------0.17