ID: uc003cly.3_intron_11_0_chr3_42793518_r.5p
GENE: (4)
chr3:42793867-42794116-


(1)
AGO2.ip
(3)
B-CELL
(10)
CELL-LINE
(5)
CERVIX
(3)
LIVER
(6)
OTHER
(11)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AAACCAGGGTGAAGCAGCTGACCAATCGCATCCAGGAGCTGGAGCGGGAAGTGAGGGGCCTTGGTCATTCTCCCTCTGGAGGGGACTCCTAGCATGGGCAAGAGGGAACCTCCCTAGCTTCTCCATATGTAGCCGGGAGAGCTGAAGTTGGAAGGTTAAGAGGCTTTCTCAAGTCACGCAGTATATGGTGGTGCTGCATTTTAAATCCAATTCTGTTGCCCTCCAACAGGCTTCTTGGTGTCTCTGGCCT
................................................................((((((((((...((((....))))....(((((.(((((((.....))))..))).)))))........))))))).)))....((((((((....)))))))).................................................................................
................................................................65.......................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR040017(GSM532902)
G645T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................................TGGAAGGTTAAGAGGAGA....................................................................................1824.000.0018.00---1.00-2.00-----1.00-----------1.00---1.00----------
....................................................................................................................................................TGGAAGGTTAAGAGGAGG....................................................................................1821.000.0020.00------------------------1.00-------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGGA...................................................................................1921.000.0018.00------------1.00------1.00--------------1.00---
....................................................................................................................................................TGGAAGGTTAAGAGGACC....................................................................................186.000.00-5.00--------------------1.00----------------
....................................................................................................................................................TGGAAGGTTAAGAGGAG.....................................................................................175.000.00--2.00------1.00-1.00-----------1.00---------------
..................................................................................................................................................GTTGGAAGGTTAAGAGG.......................................................................................1712.002.00---2.00-----------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGT....................................................................................182.000.00-------------------1.00-1.00-----------------
....................................................................................................................................................TGGAAGGTTAAGAGGATGG...................................................................................192.000.00--------2.00------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGTGG....................................................................................182.000.002.00--------------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGC....................................................................................182.000.001.00--------------------------1.00-----------
.AACCAGGGTGAAGCAGCTGACC...................................................................................................................................................................................................................................2212.002.00-------2.00-------------------------------
...................................................................................................................................................TTGGAAGGTTAAGAGGAGA....................................................................................192.000.00-2.00-------------------------------------
.......GGTGAAGCAGCTGACTGT.................................................................................................................................................................................................................................181.000.00-------------------------------1.00-------
....................................................................................................................................................TGGAAGGTTAAGAGGAGAG...................................................................................191.000.00----------------------------------1.00----
................................................................................................................................................AAGTTGGAAGGTTAAAAC........................................................................................181.000.00-----------------------------1.00---------
.....................................................................CTCCCTCTGGAGGGGGCG...................................................................................................................................................................181.000.00----------1.00----------------------------
.....................................................................................................................................................GGAAGGTTAAGAGGCGAGG..................................................................................191.000.00-----------------1.00---------------------
...................................................................................................................................GCCGGGAGAGCTGAAGTTGGTA.................................................................................................221.000.00---------------------------------1.00-----
....................................AGCTGGAGCGGGAAGTGAGGGGCCTCG...........................................................................................................................................................................................271.000.00-----1.00---------------------------------
...............................CCAGGAGCTGGAGCGGGAACA......................................................................................................................................................................................................211.000.00---------------1.00-----------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAC.....................................................................................171.000.00------------------------------1.00--------
........................ATCGCATCCAGGAGCTGG................................................................................................................................................................................................................1811.001.00--------------------------1.00------------
..................................................................ATTCTCCCTCTGGAGGGGACTCCT................................................................................................................................................................2411.001.00-----1.00---------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGCGATG..................................................................................201.000.001.00--------------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGAT...................................................................................191.000.00--1.00------------------------------------
.......................................TGGAGCGGGAAGTGAGGG.................................................................................................................................................................................................1811.001.00------------------------------------1.00--
.................................AGGAGCTGGAGCGGGAAGTGAGGGGCCTTGGTC........................................................................................................................................................................................3311.001.00-----1.00---------------------------------
...........AAGCAGCTGACCAATATCG............................................................................................................................................................................................................................191.000.00--1.00------------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGTG...................................................................................191.000.00------1.00--------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGCCCG...................................................................................191.000.00----1.00----------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAT.....................................................................................171.000.00---------1.00-----------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAAGT...................................................................................191.000.00--------------1.00------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGGT...................................................................................191.000.00----1.00----------------------------------
....................................................................................................................................................TGGAAGGTTAAGAGGTGA....................................................................................181.000.001.00--------------------------------------
..........................................................................................................................................GAGCTGAAGTTGGAAGGTTAA...........................................................................................2111.001.00------------------1.00--------------------
....................................................................................................................................................TGGAAGGTTAAGAGGAGGG...................................................................................191.000.00----1.00----------------------------------
.....AGGGTGAAGCAGCTGAC....................................................................................................................................................................................................................................1720.500.50-------------------------------------0.50-
................................CAGGAGCTGGAGCGGGAA........................................................................................................................................................................................................1820.500.50-------0.50-------------------------------

Antisense strand
AAACCAGGGTGAAGCAGCTGACCAATCGCATCCAGGAGCTGGAGCGGGAAGTGAGGGGCCTTGGTCATTCTCCCTCTGGAGGGGACTCCTAGCATGGGCAAGAGGGAACCTCCCTAGCTTCTCCATATGTAGCCGGGAGAGCTGAAGTTGGAAGGTTAAGAGGCTTTCTCAAGTCACGCAGTATATGGTGGTGCTGCATTTTAAATCCAATTCTGTTGCCCTCCAACAGGCTTCTTGGTGTCTCTGGCCT
................................................................((((((((((...((((....))))....(((((.(((((((.....))))..))).)))))........))))))).)))....((((((((....)))))))).................................................................................
................................................................65.......................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR040017(GSM532902)
G645T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................................................TTCTCAAGTCACGCAGTATC................................................................. 202.000.00---2.00-----------------------------------
.............................................................TGGTCATTCTCCCTCTCA........................................................................................................................................................................... 181.000.00--------------------------------1.00------
......................................................................................................................................................................ATACTGCGTGACTTGAGA.................................................................. 1811.001.00----------------1.00----------------------
.................................................................................................................................................................................................................................ACAGGCTTCTTGGTGTGGG...... 191.000.00-----1.00---------------------------------
............................................................AGGGAGAATGACCAA............................................................................................................................................................................... 1590.110.11--------------------------------------0.11