ID: uc003clp.2_intron_16_0_chr3_42684888_f.3p
GENE: (17)
chr3:42685191-42685440+


(2)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
TTAACATTTTTCTCTTTAATTATGGTAAGTCTCATTTGGGGCAATTGTTAAATGTTTCCAGTACTTGTTTTGGAAATATATCCTCATGCTGTCACCTAGTGCCCATGTTCTAAGCTAGAACACTCCTGAGATCCTAAAAAGAAATAGGAACATATGAGTATCTGAGTGGGAAAATTTAGTGTTTGTTGTTGCCGTTAAAGCAGGTCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTA
..................................................................................................................................................((((((.(((((((.((((((......))))))))))))))))).)).........................................................
.......................................................................................................................................136....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189786SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................................................GTTGTTGCCGTTAAAAAGC...............................................1936.000.006.00-6.003.004.005.004.002.00-2.00-----1.00---------1.001.00-------1.00-
........................................................................................................................................................................................GTTGTTGCCGTTAAAA..................................................167.000.00--------2.00---------1.001.00----1.00----1.00-1.00----
.......................................................................................................................................................................................TGTTGTTGCCGTTAAAAAGC...............................................204.000.00--1.00-1.00--2.00----------------------------
...............................................................................................................................................................................................................................ACTATAGCAGGAGTCGGAGTCGAA...2414.004.00-4.00----------------------------------
...........................................................................................................................................................................................................................AGCTACTATAGCAGGAGTCGGAGT.......2413.003.00-3.00----------------------------------
.......................................................................................................................................................................................TGTTGTTGCCGTTAAAA..................................................172.000.00--------1.00-------------1.00-------------
........................................................................................................................................................................................GTTGTTGCCGTTAAAAATC...............................................192.000.001.00--------1.00--------------------------
....CATTTTTCTCTTTAATTATTCT................................................................................................................................................................................................................................221.000.00------------------------------1.00-----
.....................................................................................................................................................................................................................TACGATAGCTACTATAGCAGGAG..............2311.001.00-----------------------1.00------------
....................................................................................................................................................................................................................................AGCAGGAGTCGGAGTCGAA...1911.001.00--------------------1.00---------------
............................................................................................................................................................................................................................GCTACTATAGCAGGAGTCGGAGTC......2411.001.00--------------------------------1.00---
..................................................................................................................................................................................................................................ATAGCAGGAGTCGGAGTCGAAGCAG251.000.00---1.00--------------------------------
..................................................................................................................................................................TGAGTGGGAAAATTTAGTGT....................................................................2011.001.00-------------1.00----------------------
............................................................................................................................................GAAATAGGAACATATGAGTCA.........................................................................................211.000.00----------------------------1.00-------
...........................................................................................................................................................................................................................AGCTACTATAGCAGGAGTCGGAGTCG.....2611.001.00---1.00--------------------------------
............................................................................................................................................................AGTATCTGAGTGGGAAAATTTAGTGT....................................................................2611.001.00----------1.00-------------------------
...........................................................................................................................................................................................................................AGCTACTATAGCAGGAGTCGGAG........2311.001.00-1.00----------------------------------
.......TTTTCTCTTTAATTATATTA...............................................................................................................................................................................................................................201.000.00-----------------------------------1.00
......................................................................................................................................................................................................AGCAGGTCCTACACCTACG.................................1911.001.00---------------------------1.00--------
................................................................................................................................................................TCTGAGTGGGAAAATTTAGTGT....................................................................2211.001.00---------------------1.00--------------
...........................................................................................................................................................................................................................AGCTACTATAGCAGGAGTCGGAGTCC.....261.000.00---1.00--------------------------------
................................................................................................................AGCTAGAACACTCCTGAGATCCTAAAAAGAA...........................................................................................................3111.001.00-----------1.00------------------------

Antisense strand
TTAACATTTTTCTCTTTAATTATGGTAAGTCTCATTTGGGGCAATTGTTAAATGTTTCCAGTACTTGTTTTGGAAATATATCCTCATGCTGTCACCTAGTGCCCATGTTCTAAGCTAGAACACTCCTGAGATCCTAAAAAGAAATAGGAACATATGAGTATCTGAGTGGGAAAATTTAGTGTTTGTTGTTGCCGTTAAAGCAGGTCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTA
..................................................................................................................................................((((((.(((((((.((((((......))))))))))))))))).)).........................................................
.......................................................................................................................................136....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189786SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................................................AAAATTTAGTGTTTGAAAG............................................................. 192.000.00-----------------1.00---------------1.00--
.............................................................................................................................................................................................CGTAGGTGTAGGACCTGCTTTAACGGCA................................. 2811.001.00----------------1.00-------------------
.........................................................................................................................................................................................................TATAGTAGCTATCGTAGGTGTAGGACCT..................... 2811.001.00--------------1.00---------------------
............................................................................................CACCTAGTGCCCATGTTGG........................................................................................................................................... 191.000.001.00-----------------------------------
.............................................................................................................................................................................................TAGGTGTAGGACCTGCTTTAACGGCA................................... 2611.001.00------------1.00-----------------------