ID: uc003ckv.3_intron_10_0_chr3_41746644_r
GENE: (26)
chr3:41746594-41746795-


(7)
B-CELL 		(2)
BRAIN 		(10)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCATATTAAATCTGTAGACTCAGGAGAAACGAACATAGATGGAGCCATAGGTGAGTAGACCCTGGAACATTTTGTGTCTTTGTTTGAGGTACTTTGATATTATGATTTAGAACATGTAAATAAACACCTATAATAATTAACTGTATTTCTAGGACTGACAGCATCAGAAGAATTTATCAAGATCACATTGTCAGCTTTTGAA
...........................................................................(((((.....(((((((......(((((....(((....(((......))).)))..))))).....))))))).)))))...............................................
................................................................65...........................................................................................158..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................ATAATTAACTGTATTTCTAGAA................................................22159.0014.0029.008.00-2.00--1.005.00--2.00-1.00--------------1.00---1.00--1.00--1.00-1.00-----1.00-1.00-----1.001.00---1.00--1.00-
....................................................................................................................................ATAATTAACTGTATTTCTAGA.................................................21149.0014.0014.0014.00-1.00-4.003.00---1.00-1.00-1.00-1.001.00------1.00-------------1.00-1.00-1.00------1.00-----1.001.001.00-----
....................................................................................................................................ATAATTAACTGTATTTCTAG..................................................20114.0014.00-4.00-3.00------------1.00-1.00----1.00--------1.001.00--1.00-------1.00------------------
...................................................................................................................................AATAATTAACTGTATTTCTAGA.................................................2218.002.006.00-----1.00-----------------------1.00--------------------------------
..................................................GTGAGTAGACCCTGGAACATTTTGTGTCTTTGTTTGAGGTACTTTGATATTATGATTTAGAACATGTAAATAAACACCTATAATTA..................................................................867.000.00--7.00------------------------------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCTA...................................................1916.006.00----4.00----2.00-----------------------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCTAGAAA...............................................2315.0014.002.002.00------------1.00------------------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCTAGAAAA..............................................2414.0014.004.00--------------------------------------------------------------
...................................................................................................................................AATAATTAACTGTATTTCTAGAAA...............................................2413.002.00-3.00-------------------------------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCTATA.................................................2112.006.00-----1.00---------------------------------------------1.00-----------
.................ACTCAGGAGAAACGAACATA.....................................................................................................................................................................2012.002.00--------2.00------------------------------------------------------
.....................................................................................................................................TAATTAACTGTATTTCTAGAA................................................212.000.002.00--------------------------------------------------------------
...............................................................................................................................CTATAATAATTAACTGTATTTCTAGAA................................................272.000.002.00--------------------------------------------------------------
................................................................................................................................TATAATAATTAACTGTATTTCTAGAA................................................262.000.001.00--------------------1.00-----------------------------------------
...................................................................................................................................AATAATTAACTGTATTTCTAG..................................................2112.002.001.00-------------------------------------------------1.00------------
........AATCTGTAGACTCAGGAGAAACGAACA.......................................................................................................................................................................2711.001.00-------------------------1.00-------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCT....................................................1811.001.00----1.00----------------------------------------------------------
...........................................................................................................................................................TGACAGCATCAGAAGGCCG............................191.000.00-------------1.00-------------------------------------------------
...................................................................................................................................AATAATTAACTGTATTTCTA...................................................2011.001.00-------------------1.00-------------------------------------------
....................................................................................................................................ATAATTAACTGTATTTCTAGT.................................................2111.0014.001.00--------------------------------------------------------------
.....................................................................TTTTGTGTCTTTGTTTTGTT.................................................................................................................201.000.00-------------1.00-------------------------------------------------
......................................................................................................................................AATTAACTGTATTTCCATA.................................................191.000.00--------1.00------------------------------------------------------
......TAAATCTGTAGACTCAGGAGAAACGAAC........................................................................................................................................................................2811.001.00---------------1.00-----------------------------------------------
.......AAATCTGTAGACTCAGGAGAAACGAA.........................................................................................................................................................................2611.001.00-----------1.00---------------------------------------------------
.....................................................................................................................................................TAGGACTGACAGCATCAGAAGAATT............................2511.001.00-----------1.00---------------------------------------------------
.....................................................................................................................AAATAAACACCTATATATA..................................................................191.000.00-----------------------------------1.00---------------------------
......TAAATCTGTAGACTCAGGAGAAACGAA.........................................................................................................................................................................2711.001.00----------------------------1.00----------------------------------
............................ACGAACATAGATGGAGCCATAGGAC.....................................................................................................................................................251.000.00----------------------------------------------------1.00----------
.....................................................................................................................................TAATTAACTGTATTTCTA...................................................1811.001.00----1.00----------------------------------------------------------
........AATCTGTAGACTCAGGAGAAACGAA.........................................................................................................................................................................2511.001.00-----------------------------1.00---------------------------------
..................................................................................TTTGAGGTACTTTGATATTATTTCC...............................................................................................251.000.00-----------------------------------------1.00---------------------
...................TCAGGAGAAACGAACATA.....................................................................................................................................................................1811.001.00------------------------------------------------------------1.00--
..................................................GTGAGTAGACCCTGGAACAA....................................................................................................................................201.000.00-----------------------------------------------------------1.00---
................................................................................................................................TATAATAATTAACTGTATTTCTA...................................................2311.001.00---------1.00-----------------------------------------------------
.......................................................................................................................................ATTAACTGTATTTCTAGAA................................................191.000.00-1.00-------------------------------------------------------------
.........................................................................................................................................................ACTGACAGCATCAGAAGAATTTATCAAGAT...................3011.001.00------------------------------------------------1.00--------------
......................................................................TTTGTGTCTTTGTTTGCGT.................................................................................................................191.000.00----------------------------------------------1.00----------------
..................CTCAGGAGAAACGAACATAGATGG................................................................................................................................................................2411.001.00--------------------------1.00------------------------------------
...............................AACATAGATGGAGCCATAGG.......................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------
..................................ATAGATGGAGCCATAG........................................................................................................................................................1611.001.00----------------------1.00----------------------------------------
..................................................GTGAGTAGACCCTGGAACATTTTGTGTCTTTGTTTGAGGTACTTTGATATTATGATTTAGAACATGTAAATAAACACCTATAATAATTAACTGTATTT......................................................9811.001.00-------------------------------------------1.00-------------------
............TGTAGACTCAGGAGAAACGAACATAGA...................................................................................................................................................................2711.001.00---------------1.00-----------------------------------------------

Antisense strand
TCATATTAAATCTGTAGACTCAGGAGAAACGAACATAGATGGAGCCATAGGTGAGTAGACCCTGGAACATTTTGTGTCTTTGTTTGAGGTACTTTGATATTATGATTTAGAACATGTAAATAAACACCTATAATAATTAACTGTATTTCTAGGACTGACAGCATCAGAAGAATTTATCAAGATCACATTGTCAGCTTTTGAA
...........................................................................(((((.....(((((((......(((((....(((....(((......))).)))..))))).....))))))).)))))...............................................
................................................................65...........................................................................................158..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................................................................................TTGTCAGCTTTTGAACC 171.000.00--------------------------------------------------------------1.00