ID: uc003cjq.2_intron_2_0_chr3_39450231_f.3p
GENE: (3)
chr3:39452045-39452294+


(3)
AGO2.ip
(3)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(1)
HEART
(4)
HELA
(1)
LIVER
(1)
OTHER
(14)
SKIN
(2)
XRN.ip

Sense strand
ATAGTAGAAAAACAAGCCTGTCTTTTTTAATGTATGCAGGAAATCTCTGGAGAAGTAAGAGAGGTTAAGGAAAGCTGGGTATGTGCCTGCTTTACATGGAGTAGTAGTGATTAAGTTGGCCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTTTTAAATTCTTCAAAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGG
.....................................................(((((.((....((((.....((((((((..(((.((((..(((.........)))...)))).)))..)))))))).....))))((((...))))..)).)))))((((.((.....)).)))).......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532874(GSM532874)
G699T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.......................................................................................................................CCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTTTTAAATTCTTCAAAG..................................................8119.009.009.00-----------------------------------------
......................................................................................................................................GCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTTTTAAATTCTTCAAAGA.................................................6718.008.00-8.00----------------------------------------
..........................................................................................................................................................GTTGCTGTGGAATATCGAGTAC..........................................................................2215.005.00---5.00--------------------------------------
..................................................................................................................................................................................................................TGAAGTTTGCTGCTGCCATC....................204.000.00----4.00-------------------------------------
.....................................................AGTAAGAGAGGTTAAGGAAAGCTGG............................................................................................................................................................................2514.004.00-----4.00------------------------------------
.................................................................................................................................................................................................................CTGAAGTTTGCTGCTGCCACTGGAGC...............2602.002.00--------1.00-------------------1.00-------------
...............................................................................................................................................................................................................TGCTGAAGTTTGCTGCTGCCAC.....................2202.002.00------2.00-----------------------------------
.......AAAAACAAGCCTGTCTTTA................................................................................................................................................................................................................................192.000.00-----------2.00------------------------------
............................................................................................................................................................................GTACCACTAACTTTTAAATTCTTCAAAG..................................................2812.002.00----------2.00-------------------------------
..........................................................................................................GTGATTAAGTTGGCCAGTGCCCAGAAGTGCT.................................................................................................................3112.002.00--------------------------1.00---1.00-----------
.................................................................................................................................................GCCAGGATTGTTGCTGTGG......................................................................................1911.001.00------------------1.00-----------------------
...................................................................................................................................................CAGGATTGTTGCTGTGGA.....................................................................................1811.001.00--------------------------------------1.00---
.........................................................AGAGAGGTTAAGGAAAGC...............................................................................................................................................................................1811.001.00-----------------------1.00------------------
............................................................................................................GATTAAGTTGGCCAGTGC............................................................................................................................1811.001.00------------------------1.00-----------------
....................................................................................................................................................................................................................AAGTTTGCTGCTGCCACTGGAGCCACCT..........281.000.00--1.00---------------------------------------
.........................................................................................CTTTACATGGAGTAGTAGTGATTAAGTTGGC..................................................................................................................................3111.001.00-------------------------------1.00----------
........................................................................................................................................................TTGTTGCTGTGGAATATC................................................................................1811.001.00---------1.00--------------------------------
..........................................................................................................GTGATTAAGTTGGCCAG...............................................................................................................................1711.001.00---------------1.00--------------------------
................................................................................................TGGAGTAGTAGTGATTTTT.......................................................................................................................................191.000.00-------1.00----------------------------------
...........................................................................................................................................................TTGCTGTGGAATATCGAGTACCA........................................................................2311.001.00------------------------------------1.00-----
...............................................................................................ATGGAGTAGTAGTGATTAAGTTGGC..................................................................................................................................2511.001.00----------------------1.00-------------------
...................................................................................................................................................................................................................GAAGTTTGCTGCTGCCACTGGA.................2201.001.00--------1.00---------------------------------
............................................................................................................................................................................................................CTGTGCTGAAGTTTGCTG............................1801.001.00---------------------------------1.00--------
.......................................................................................................GTAGTGATTAAGTTGGCCAGGGC............................................................................................................................231.000.00-----------------------------1.00------------
..................................TGCAGGAAATCTCTGGAGAAGT..................................................................................................................................................................................................2211.001.00---------------------------1.00--------------
.....................................AGGAAATCTCTGGAGCGGT..................................................................................................................................................................................................191.000.00-------------------------1.00----------------
............................................................................................................................................TGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTTTTAAATTCTTCAAAG..................................................6011.001.00----------------------------------1.00-------
..................................................................................................................................................................................................TCAAAGAGGGCTGTGCTGAAGTTTGCT.............................2711.001.00----------------------------------------1.00-
..........................................................................................................GTGATTAAGTTGGCCAGTGC............................................................................................................................2011.001.00-----------------------------------1.00------
...................................................................AGGAAAGCTGGGTATGTGCCTGCTTTACACGG.......................................................................................................................................................321.000.00--1.00---------------------------------------
..............................................................................................................................................................................................................................CTGCCACTGGAGCCACTCCAT.......211.000.00--------------------1.00---------------------
...........................................................................................................................................................................................................................CTGCTGCCACTGGAGCCACTCCAATTGCTTGC321.000.00------------1.00-----------------------------
...........................................................................................................................................................................................................GCTGTGCTGAAGTTTGCTGCTGAA.......................241.000.00--------------------------------1.00---------
..............................................................................................................................................GGTGCCAGGATTGTTGCTGTGGAATATCGAG.............................................................................3111.001.00--------------1.00---------------------------
........................................................................................................................................................................................................................TTGCTGCTGCCACTGGAGCCACCCC.........251.000.00--1.00---------------------------------------
....................................................................................................................................................................................................................AAGTTTGCTGCTGCCACTGG..................2001.001.00-------------------------------------1.00----
............................................................................................................................................................................GTACCACTAACTTTTAAATTCTTCAAAGAG................................................3011.001.00-----------------1.00------------------------
..............................................................................................................................................................................................TTCTTCAAAGAGGGCTGTGCTGAAGTTTGCTGCTG.........................3511.001.00-------------1.00----------------------------
.....................................................................................................................................................................................................AAGAGGGCTGTGCTGAAGTTCG...............................221.000.00--1.00---------------------------------------
...................................................................................................................................................................................................................GAAGTTTGCTGCTGCCACT....................1901.001.00------1.00-----------------------------------
..........................................................................................................................................................................GAGTACCACTAACTTTTAAATTCTTCAAAG..................................................3011.001.00----------------1.00-------------------------
.........................................................................................................................................TACTGGGTGCCAGGATTGTTGC...........................................................................................2211.001.00---------1.00--------------------------------
...............................................................GTTAAGGAAAGCTGGATA.........................................................................................................................................................................181.000.00---------------------------------------1.00--
............................................................................................................................................TGGGTGCCAGGATTGTTGCTGTGGA.....................................................................................2511.001.00-----------------------------------------1.00
................................................................................................TGGAGTAGTAGTGATTAGAGG.....................................................................................................................................211.000.00-------1.00----------------------------------
......................................................................................................................................................................................................AGAGGGCTGTGCTGAAGTTTGCTGCTGCA.......................291.000.00--1.00---------------------------------------
.........................................................................................CTTTACATGGAGTAGTAGTGATTAAGTTGGCC.................................................................................................................................3211.001.00---------------------1.00--------------------
....................................................................................................................................................AGGATTGTTGCTGTGG......................................................................................1620.500.50------------0.50-----------------------------

Antisense strand
ATAGTAGAAAAACAAGCCTGTCTTTTTTAATGTATGCAGGAAATCTCTGGAGAAGTAAGAGAGGTTAAGGAAAGCTGGGTATGTGCCTGCTTTACATGGAGTAGTAGTGATTAAGTTGGCCAGTGCCCAGAAGTGCTTACTGGGTGCCAGGATTGTTGCTGTGGAATATCGAGTACCACTAACTTTTAAATTCTTCAAAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGG
.....................................................(((((.((....((((.....((((((((..(((.((((..(((.........)))...)))).)))..)))))))).....))))((((...))))..)).)))))((((.((.....)).)))).......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532874(GSM532874)
G699T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..................................TGCAGGAAATCTCTGGAAA..................................................................................................................................................................................................... 191.000.00-------------------1.00----------------------