ID: uc003cdt.1_intron_19_0_chr3_27385862_r.3p
GENE: (5)
chr3:27385812-27386061-


(1)
AGO1.ip 		(3)
AGO2.ip 		(2)
B-CELL 		(7)
BRAIN 		(15)
BREAST 		(40)
CELL-LINE 		(5)
CERVIX 		(8)
HEART 		(2)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(2)
OTHER 		(33)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TTCTTATTTTAACAGCTGATAGTTGCTTTTAGCAACATGTTAAACGCAAGGCTCCTTCAATATTTGCCTGAATCCTCATTAGTATAGTGGTTAGTAATAATAAAAATGTTACCTGAATATAGATGATCTTTGTCTGCACTGGCAACTTTGAGACAGCCTGATCTCTATTACAAAATCCTTTTCTGTTTGTTTTGTCTCAGTATAAACTACAAGAATGAGAGAAATTTCAGCAAACATCCTCAGCGTAAAC
...........................................................................((((((...))))))...((((((.......))))))......(((((.((((.((((((.((..........))))))))...)))))))))..................................................................................
...................................................................68....................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343336SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................TCCTCATTAGTATAGTGGTTAGT...........................................................................................................................................................23157.0057.0017.0015.00-3.001.00---3.00------3.00-1.00-----1.002.00--2.00----------1.00----1.00-1.00------1.00-----2.00---------------------------------1.00-----------1.00---------------1.00---------
........................................................................TCCTCATTAGTATAGTGGTGAGA...........................................................................................................................................................2330.000.00----1.001.00----------2.00---2.00--1.00-------1.00---2.002.00-1.00---1.00-----1.00--------2.00-2.00-1.00---------1.00--1.00----1.001.001.001.00--1.00----------1.00--------------1.00---1.00--------------
.................................................................................GTATAGTGGTTAGTAATCTGC....................................................................................................................................................21121.001.00--1.00---4.001.00-2.004.00-2.00-2.00---------1.00--1.00---2.00---------------------------------------------------------------------------------------1.00----------
........................................................................TCCTCATTAGTATAGTGGTGATT...........................................................................................................................................................2312.000.002.001.00-1.001.00---1.00--2.00-2.00-------------------------------1.00-----1.00------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGT................................................................................................................................................................1811.000.00---2.00-5.00---------------------------------------------1.00--1.00--------------------------------1.00----------------------1.00-------------------
........................................................................TCCTCATTAGTATAGTGGTTAGTATCCC......................................................................................................................................................2810.000.001.00-----------------1.00-------1.00------------2.00------2.00--1.00--------------------------------------------1.00-------1.00---------------------------
.................................................................................GTATAGTGGTTAGTAATCTG.....................................................................................................................................................2017.001.00---------2.00---------3.00----------1.00------1.00--------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTTG................................................................................................................................................................186.000.00---3.001.001.00--1.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAATCT......................................................................................................................................................185.000.00--1.00--------1.00------1.00-------1.00------1.00------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAGCCG......................................................................................................................................................195.000.00----------------1.00--------------------------------1.00--1.00--1.00-------------------------------------------1.00------------------------------
.................................................................................GTATAGTGGTTAGTAATC.......................................................................................................................................................1815.001.00------------1.00------1.00----------1.00-------------1.00--------1.00----------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATCT......................................................................................................................................................1914.001.00------------2.00----1.00-------------------1.00--------------------------------------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAATCTGC....................................................................................................................................................204.000.00-------1.00------1.00---1.00---------------------------------------------------------1.00-----------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGGAGT............................................................................................................................................................224.000.002.002.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAG...................................................................................................................................................................1504.004.00---------------------3.00-------------------------------------------------------------1.00----------------------------------------------
.................................................................................GTATAGTGGTTAGTAATCTGG....................................................................................................................................................2113.001.00---------1.001.00---1.00-------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTTATT...........................................................................................................................................................233.000.00---1.00----1.00----1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................TAGTGGTTAGTAATATGA....................................................................................................................................................183.000.00-------2.00-------------------------------------------------------------------1.00------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTGAGG...........................................................................................................................................................233.000.00----1.001.00-----------------------1.00----------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGA...............................................................................................................................................................193.000.00----1.00-----------1.00-------------------------------------------1.00---------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAACACT.....................................................................................................................................................203.000.00----------------------3.00-----------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTTAGA...........................................................................................................................................................2313.002.00----------------------------------------2.00------------------------------------------------------------------1.00----------------------
........................................................................TCCTCATTAGTATAGAGG................................................................................................................................................................1802.004.00-----------------------------1.00-----------------------------------------------------------------------------------1.00----------------
........................................................................TCCTCATTAGTATAGTGC................................................................................................................................................................182.000.00-------------1.00---------------------------------------------------------------------------------------1.00----------------------------
........................................................................TCCTCATTAGTATAGTTT................................................................................................................................................................182.000.001.00----1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGAAA..............................................................................................................................................................202.000.00------------------------------------------------------------------------1.00---------------------------------------1.00-----------------
........................................................................TCCTCATTAGTATAGTGGTGCGT...........................................................................................................................................................232.000.00-----------------------------1.00------------------------1.00---------------------------------------------------------------------------
....................................................................................TAGTGGTTAGTAATATGCG...................................................................................................................................................192.000.00-----------1.00-------------------------------1.00--------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGGAGA............................................................................................................................................................222.000.00--------------------1.00---------------------------------------------------------------1.00---------------------------------------------
..................................................................................TATAGTGGTTAGTAATCTG.....................................................................................................................................................192.000.00---------------------------------1.00------------------------------1.00-----------------------------------------------------------------
.........................................................................CCTCATTAGTATAGTGGTGAGA...........................................................................................................................................................222.000.00--------------------------------------------------------2.00-------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGAAA.............................................................................................................................................................212.000.00--1.00--------------------1.00----------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTGTGT...........................................................................................................................................................232.000.00-------------1.00-1.00------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAGA........................................................................................................................................................172.000.00-----------------------------------------------2.00----------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTTAG............................................................................................................................................................2212.002.00-------------------------------------------------------1.00-----------------------------------------1.00--------------------------------
.................................................................................GTATAGTGGTTAGTAATGTGC....................................................................................................................................................2112.001.00--1.00---1.00---------------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAACGAT.....................................................................................................................................................202.000.00--2.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................................TAGTGGTTAGTAATATGC....................................................................................................................................................182.000.00-------2.00--------------------------------------------------------------------------------------------------------------------------
.............................TAGCAACATGTTAAAATTG..........................................................................................................................................................................................................192.000.00-------------------------2.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................TGAGACAGCCTGATCTTT....................................................................................182.000.00------------------------------------------------------------------1.00---------------------------------------------------1.00-----------
........................................................................TCCTCATTAGTATAGTGGTTAGTATCC.......................................................................................................................................................272.000.00-1.00-------------------------------------------------------------------------------------------------------1.00------------------------
.................................................................................GTATAGTGGTTAGTAATATG.....................................................................................................................................................201.000.00----------------------------------------------------------------------------------------------------1.00-----------------------------
.................................................................................GTATAGTGGTTAGTAGTC.......................................................................................................................................................181.000.00---------------------------------1.00------------------------------------------------------------------------------------------------
.............................TAGCAACATGTTAAAATTT..........................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------1.00----------------------------------------
.............................................................................................................................................................................AATCCTTTTCTGTTTGTTTTGTT......................................................231.000.00----------------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATTGGG....................................................................................................................................................2111.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAATC.......................................................................................................................................................171.000.00------------------1.00---------------------------------------------------------------------------------------------------------------
................................................................................AGTATAGTGGTTAGTACT........................................................................................................................................................181.000.00-------------------------------------------------------------------------------------------1.00--------------------------------------
.................................................................................GTATAGTGGTTAGTAATCTTA....................................................................................................................................................2111.001.00------------------------------1.00---------------------------------------------------------------------------------------------------
..........................................................................CTCATTAGTATAGTGGTGATT...........................................................................................................................................................211.000.00--------1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTCGAC..............................................................................................................................................................201.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................ATAGTGGTTAGTAATCTTC....................................................................................................................................................191.000.00-----------1.00----------------------------------------------------------------------------------------------------------------------
.............................................................................ATTAGTATAGTGGTTAGAAC.........................................................................................................................................................201.000.00-------------------------------------------------------------------------------------------------------------1.00--------------------
........................................................................TCCTCATTAGTATAGAGC................................................................................................................................................................1801.004.00--1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAAT........................................................................................................................................................1711.001.00-------------------------------------------------------------------1.00--------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGCGAG............................................................................................................................................................221.000.00----------------------------------------------------------------------------------------------------------1.00-----------------------
.................................................................................GTATAGTGGTTAGTAGG........................................................................................................................................................171.000.00---------------------------------------------------------------1.00------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTAA................................................................................................................................................................181.000.00------------------------------------------------------------------------------------------1.00---------------------------------------
................................................................................AGTATAGTGGTTAGTAATTTG.....................................................................................................................................................211.000.00-------1.00--------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGG...............................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00----------------------------------
................................................................................AGTATAGTGGTTAGTATTCC......................................................................................................................................................201.000.00------------------------------------------------------------------------------1.00---------------------------------------------------
........................................................................TCCTCATTAGTATAGAGGT...............................................................................................................................................................1901.004.00------------------------------------------------------------1.00---------------------------------------------------------------------
....................................................................................TAGTGGTTAGTAATACCGC...................................................................................................................................................191.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
........TTAACAGCTGATAGTGCAG...............................................................................................................................................................................................................................191.000.00-------------------------1.00--------------------------------------------------------------------------------------------------------
................................................................................AGTATAGTGGTTAGTAATATGAG...................................................................................................................................................231.000.00------1.00---------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGTT...............................................................................................................................................................191.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTAAAA..............................................................................................................................................................201.000.00------------------------------------------------------------------------------------------------------------1.00---------------------
........................................................................TCCTCATTAGTATAGTGGAAC.............................................................................................................................................................211.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAAGGA......................................................................................................................................................181.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTAT................................................................................................................................................................181.000.00---1.00------------------------------------------------------------------------------------------------------------------------------
......................................................................AATCCTCATTAGTATAGTGGT...............................................................................................................................................................2111.001.00------------------------------------------1.00---------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAAGAAC.....................................................................................................................................................201.000.00----------------------------------1.00-----------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGCGG................................................................................................................................................................1801.004.00-----------------------------------------------------------------------------1.00----------------------------------------------------
...................................................................................ATAGTGGTTAGTAATCTGC....................................................................................................................................................191.000.00-------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATCTTC....................................................................................................................................................2111.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAACG.......................................................................................................................................................181.000.00-----------------------------------------------------------------1.00----------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATCTTT....................................................................................................................................................2111.001.00---------1.00------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGTG...............................................................................................................................................................191.000.00-------------------------------------------------------------------------1.00--------------------------------------------------------
................................................................................AGTATAGTGGTTAGTACCC.......................................................................................................................................................191.000.00---------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTTTTCTGTTTGTTTTAGA......................................................191.000.00----------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAAAGA......................................................................................................................................................181.000.00----------------------------------1.00-----------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTAGT............................................................................................................................................................221.000.00---------------------------------------------------------------------1.00------------------------------------------------------------
..................................................................................TATAGTGGTTAGTAAAAG......................................................................................................................................................181.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGCGAG.............................................................................................................................................................211.000.00--------------------------------------------------------------------------------------------------------------------1.00-------------
.......................................................................................................................................................................................TGTTTGTTTTGTCTCGTTG................................................191.000.00----------------------------1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TACAAGAATGAGAGAATTAA.......................201.000.00--------------------------------------------------1.00-------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTTAGTAT.........................................................................................................................................................251.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................ATAGTGGTTAGTAATCT......................................................................................................................................................171.000.00--------------------------------------------------1.00-------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAGTT.......................................................................................................................................................181.000.00----------------------------------------------------------------------1.00-----------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATTTGC....................................................................................................................................................2111.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTGGGT...........................................................................................................................................................231.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGGTGAGC...........................................................................................................................................................231.000.00---------------------------------------------------------------------------------------------------------------------1.00------------
........................................................................TCCTCATTAGTATAGTGGTTAGTTT.........................................................................................................................................................2511.0057.00---------------------------------------------------------------------------------------------1.00------------------------------------
..................................................................................TATAGTGGTTAGTAAAAC......................................................................................................................................................181.000.00-----------------------------------------------------1.00----------------------------------------------------------------------------
............................................................................CATTAGTATAGTGGTTAG............................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------------------------1.00---------------
....................................................................................TAGTGGTTAGTAATATGG....................................................................................................................................................181.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGAAAA.............................................................................................................................................................211.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------
.........................................................................CCTCATTAGTATAGTGGA...............................................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................TATAGTGGTTAGTAATCTGT....................................................................................................................................................201.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................TCATTAGTATAGTGGTTAGTATCG.......................................................................................................................................................241.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
........................................................................TCCTCATTAGTATAGTGTTG..............................................................................................................................................................201.000.00--------1.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................GTATAGTGGTTAGTAATTT......................................................................................................................................................1911.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................TTAGTATAGTGGTTAGT...........................................................................................................................................................1730.670.67-------------------------------------------------------------0.33----------------------------------------------------------------0.33---
...............................................................................TAGTATAGTGGTTAGTATT........................................................................................................................................................1920.500.50----------------------------------------------------------------------------------------------------------------------------0.50-----
...............................................................................TAGTATAGTGGTTAGTA..........................................................................................................................................................1720.500.50----------------0.50-----------------------------------------------------------------------------------------------------------------
................................................................................AGTATAGTGGTTAGT...........................................................................................................................................................1560.500.50-----------------------------------------------------------------------------------------------------------------------------0.33-0.17--
...............................................................................TAGTATAGTGGTTAGTAC.........................................................................................................................................................1820.500.50---------------------------------------------------------------------------------------------------------------------------0.50------
..............................................................................TTAGTATAGTGGTTAGTA..........................................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------------------------------0.50-------
................................................................................AGTATAGTGGTTAGTGC.........................................................................................................................................................1760.170.50--------------------------------------------------------------------------------------------------------------------------------0.17-
..............................................................................TTAGTATAGTGGTTAG............................................................................................................................................................1670.140.14---------------------------------------------------------------------------------------------------------------------------------0.14

Antisense strand
TTCTTATTTTAACAGCTGATAGTTGCTTTTAGCAACATGTTAAACGCAAGGCTCCTTCAATATTTGCCTGAATCCTCATTAGTATAGTGGTTAGTAATAATAAAAATGTTACCTGAATATAGATGATCTTTGTCTGCACTGGCAACTTTGAGACAGCCTGATCTCTATTACAAAATCCTTTTCTGTTTGTTTTGTCTCAGTATAAACTACAAGAATGAGAGAAATTTCAGCAAACATCCTCAGCGTAAAC
...........................................................................((((((...))))))...((((((.......))))))......(((((.((((.((((((.((..........))))))))...)))))))))..................................................................................
...................................................................68....................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343336SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................................................................................TGAGAGAAATTTCAGGGA................. 188.000.00-----------------2.00--------------3.00---------------1.00-------------1.00-----------------------------------1.00-------------------------------
........................................TAAACGCAAGGCTCCTTT................................................................................................................................................................................................ 181.000.00--------------------------------------------------------------------------------------1.00-------------------------------------------
...................................................................................................................................................................TCTATTACAAAATCCTTTATC.................................................................. 211.000.00----------------------------------------------------------------------------------------1.00-----------------------------------------
.......................................................................................................................................GTCTCAAAGTTGCCAGTGC................................................................................................ 1920.500.50-------------------------------------------------------------------------------------------------------------------------0.50--------