ID: uc003cdj.2_intron_23_0_chr3_25671646_r
GENE: TOP2B(12)
chr3:25671596-25671852-


(2)
AGO2.ip
(2)
B-CELL
(6)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(4)
HEART
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(28)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
TTCCACTCAGGGGCAAAATTCTTAATGTACGGGAAGCTTCTCATAAACAGGTATGTATGTGTGTGTATATATATGTGTATACACACATGCACACATACATATGACATTTCTAATACTTTACTAAACTTCTCGAATTTTTAAATGTAATTTCTGACTCGTATATTTCAACACTTCAAACTACTCTCAGTGCTTTTCCTTTTTGAACAGATCATGGAAAATGCTGAAATAAATAATATTATTAAAATAGTTGGTCTACA
...............................................................................................(((((.(((...(((.....................)))...))).)))))...............................................................................................................
...............................................................................80..........................................................................156...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR029125(GSM416754)
U2OS. (cell line)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................CTCGAATTTTTAAATGTAATTTCT.........................................................................................................2419.009.00--1.00-------------2.00------1.00-----1.001.00-1.00--------1.00-1.00----------------
..................................................................................................................................CGAATTTTTAAATGTAATTTCT.........................................................................................................2218.008.00----1.003.00--2.00-----------------1.001.00--------------------------------
....................................................................................ACATGCACACATACATATGTTT.......................................................................................................................................................226.000.00-----------------1.00--------------------1.00--------1.001.00-----1.001.00----
...................................................................................................................................GAATTTTTAAATGTAATTTCT.........................................................................................................2115.005.00--------------1.001.00------1.00-1.00------------1.00----------------------
.................................................................................................................................TCGAATTTTTAAATGTAATTTCT.........................................................................................................2314.004.00--1.00-1.00---------------1.00-----------------------1.00---------------
...............................................................................................................................TCTCGAATTTTTAAATGTAATTTCT.........................................................................................................2513.003.00-----------1.00-1.00-------------------------1.00--------------------
..............................................................................................................................TTCTCGAATTTTTAAATGTAATTTCT.........................................................................................................2613.003.00--1.00------------------1.00--------------1.00-----------------------
........................ATGTACGGGAAGCTTCTCATAAA..................................................................................................................................................................................................................2313.003.00---3.00--------------------------------------------------------
...............................................................................................................................................GTAATTTCTGACTCGTAT................................................................................................1812.002.00----------2.00-------------------------------------------------
...CACTCAGGGGCAAAATTC............................................................................................................................................................................................................................................1812.002.001.00------------------------------------------------1.00----------
............................................................................................................................................................................................................CAGATCATGGAAAATGCTGAAATAAATAA........................2912.002.00------------2.00-----------------------------------------------
......................TAATGTACGGGAAGCTTCT........................................................................................................................................................................................................................1912.002.002.00-----------------------------------------------------------
...........................................................................................................................................................................................................ACAGATCATGGAAAATGCT...................................1911.001.001.00-----------------------------------------------------------
...............................................................................TACACACATGCACACATACATGA...........................................................................................................................................................231.000.00-1.00----------------------------------------------------------
...CACTCAGGGGCAAAATTCTT..........................................................................................................................................................................................................................................2011.001.00---------------------------------1.00--------------------------
.....................................................................................CATGCACACATACATATGTTT.......................................................................................................................................................211.000.00-1.00----------------------------------------------------------
....................................................................................................................................AATTTTTAAATGTAATTTCT.........................................................................................................2041.001.00-------------------0.250.250.25-------------------------------------0.25
...............AAATTCTTAATGTACGGGAAGC............................................................................................................................................................................................................................2211.001.001.00-----------------------------------------------------------
.............................CGGGAAGCTTCTCATAAACAGATCA...........................................................................................................................................................................................................251.000.00-----------------1.00------------------------------------------
.........................TGTACGGGAAGCTTCTCATAAACAGATC............................................................................................................................................................................................................281.000.00-------------------1.00----------------------------------------
.....................................................................................................TGACATTTCTAATACTTTACTAAAC...................................................................................................................................2511.001.00-----------1.00------------------------------------------------
..................................................................................................................................................................................................................ATGGAAAATGCTGAAATAAATAATA......................2511.001.00-------------------------1.00----------------------------------
.........GGGGCAAAATTCTTAATGTACGGGAAGCT...........................................................................................................................................................................................................................2911.001.00---------1.00--------------------------------------------------
........AGGGGCAAAATTCTTAATGTACGGGAAGC............................................................................................................................................................................................................................2911.001.00---------1.00--------------------------------------------------
....................................................................ATATATGTGTATACACTTGA.........................................................................................................................................................................201.000.00-1.00----------------------------------------------------------
.............................................................................................................................................................................................................AGATCATGGAAAATGCTGAAA...............................2111.001.00------------------1.00-----------------------------------------
.........................................................................................................ATTTCTAATACTTTACTAAAC...................................................................................................................................2111.001.00---------------1.00--------------------------------------------
....................................................................................ACATGCACACATACATATGTCT.......................................................................................................................................................221.000.00----------------------------------------------------1.00-------
......TCAGGGGCAAAATTCTTAATGTACGG.................................................................................................................................................................................................................................2611.001.00--------------1.00---------------------------------------------
......................TAATGTACGGGAAGC............................................................................................................................................................................................................................1511.001.00----1.00-------------------------------------------------------
.............................................................................................................................................................................................................AGATCATGGAAAATGCTGAAATA.............................2311.001.001.00-----------------------------------------------------------
..........................................................................................................................................................................................................AACAGATCATGGAAAATGCT...................................2011.001.00---------------------------------------------------1.00--------
..................................................................................................................................CGAATTTTTAAATGTAATTTCC.........................................................................................................221.000.00--------------------------------------------------1.00---------
......................................................................................................................................................................................................................................TAATATTATTAAAATAGTTGGA.....221.000.00------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................AAATGCTGAAATAAATAATATT....................2211.001.00-------1.00----------------------------------------------------
................................................................................ACACACATGCACACATACATTT...........................................................................................................................................................221.000.00----------------------------1.00-------------------------------
...CACTCAGGGGCAAAATTCT...........................................................................................................................................................................................................................................1911.001.00-------------------------------1.00----------------------------
....................................................................................ACATGCACACATACATATGTT........................................................................................................................................................211.000.00----------------------------------1.00-------------------------
.....................................................................................CATGCACACATACATATGACA.......................................................................................................................................................2111.001.00-------------1.00----------------------------------------------
.....................................................................................CATGCACACATACATATGTT........................................................................................................................................................201.000.00---------------------------------------------1.00--------------
....................................................................ATATATGTGTATACACACATG........................................................................................................................................................................2140.750.75------0.75-----------------------------------------------------
...............................................................................TACACACATGCACACATACATAT...........................................................................................................................................................2360.500.50-0.50----------------------------------------------------------
............................................................................................................................................................................................................CAGATCATGGAAAATGCTGA.................................2020.500.50----------------------------------------------------------0.50-
..................................................................................................................................................................................................................ATGGAAAATGCTGAAATAA............................1920.500.50--------------------------------------------------------0.50---
.................................................................................CACACATGCACACATACATATG..........................................................................................................................................................2240.500.50---------------------------------------------------------0.50--
..................................................................................................................................................................................................................ATGGAAAATGCTGAAATA.............................1820.500.50------------------0.50-----------------------------------------
.....................................................................................................................................ATTTTTAAATGTAATTTCT.........................................................................................................1970.430.43----------------------0.140.140.14-----------------------------------
.........................................................................................................................................................................................................GAACAGATCATGGAA.........................................1580.120.12-------------------------0.12----------------------------------

Antisense strand
TTCCACTCAGGGGCAAAATTCTTAATGTACGGGAAGCTTCTCATAAACAGGTATGTATGTGTGTGTATATATATGTGTATACACACATGCACACATACATATGACATTTCTAATACTTTACTAAACTTCTCGAATTTTTAAATGTAATTTCTGACTCGTATATTTCAACACTTCAAACTACTCTCAGTGCTTTTCCTTTTTGAACAGATCATGGAAAATGCTGAAATAAATAATATTATTAAAATAGTTGGTCTACA
...............................................................................................(((((.(((...(((.....................)))...))).)))))...............................................................................................................
...............................................................................80..........................................................................156...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR029125(GSM416754)
U2OS. (cell line)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.......................................................TATGTGTGTGTATATATATGTGTATATTTA............................................................................................................................................................................ 301.000.00-----------------------------------------------------1.00------
...........................................................TGTGTGTATATATATGGATT.................................................................................................................................................................................. 201.000.00-1.00----------------------------------------------------------
....................................................ATGTATGTGTGTGTATATAGTGC...................................................................................................................................................................................... 231.000.00----------------------------------------------1.00-------------
..............................................................GTGTATATATATGTGTATACAG............................................................................................................................................................................. 221.000.00------1.00-----------------------------------------------------
......................................................GTATGTGTGTGTATATATCAGT..................................................................................................................................................................................... 221.000.00-----------------------------------1.00------------------------
...................................................................................................................................................................................................................................AAATAATATTATTAAAATGACT........ 221.000.00------1.00-----------------------------------------------------
............................................................GTGTGTATATATATGTGGAT................................................................................................................................................................................. 201.000.00-------1.00----------------------------------------------------
....................................................................................................................................................................................................................GGAAAATGCTGAAATTAA........................... 181.000.00----------------------------------------1.00-------------------