ID: uc003bzc.2_intron_13_0_chr3_14963525_f
GENE: (14)
chr3:14963475-14963967+


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(1)
B-CELL
(9)
BREAST
(19)
CELL-LINE
(6)
CERVIX
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(6)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CTGAGGACTACAAGGCCCAGGCGCTGGCTGCATTCCACCATAGCGTGGAGGTGAGTGGGTGGGCAGGGCCCACGGGCCACCAGCTTCAGAGACCTGGGGTTCCCTGGGCGGGCATTGCTGTTGCCACTCACACCCAGATGGACGTGTAGCTCCTGTCTTGGGGCACTGGCTCCCCCCACACCCCTGCCATGCTCCCACCCTAGTCAGGGGCGGCCTCCGTGTAACCTAGGAGCCCAGCACCCACAGTCTTGTTCTCACAGTCTGGCTGTTTCCCAACCAAGGGTGAGCATCCTGGAGGGTGCAGGAGAGGCCTTTCACATCAGACCCACTCACCCACACATCACACACCCTGCACAGAGACGCAGGGCAGGGCTCACTGGGCTCTGCATCTGGCTGGTCTCCTGGCCACATTCCACATTACTCAGCCAATTCTGTTGCTGCAGATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGGCCCCCCACCCTGGT
..................................................((((((((((((((...))))))..(((.((((((((((....))))))....))))...)))..........))))))))..((....))................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.............................................................................................................GGGCATTGCTGTTGCATTG.............................................................................................................................................................................................................................................................................................................................................................................1970.000.0047.001.001.003.00--2.00-2.00--1.00---1.001.00-1.00----1.001.00--1.001.001.00-1.00-1.00---1.001.00---1.00-----
.............................................................................................................GGGCATTGCTGTTGCATT..............................................................................................................................................................................................................................................................................................................................................................................1832.000.00-14.005.001.004.00----1.002.001.00-------1.00----------------1.00----1.00-1.00----
.............................................................................................................GGGCATTGCTGTTGCATTT.............................................................................................................................................................................................................................................................................................................................................................................193.000.002.00-----1.00-----------------------------------------
.............................................................................................................GGGCATTGCTGTTGCAT...............................................................................................................................................................................................................................................................................................................................................................................173.000.00--2.00-1.00-------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCAGTG.............................................................................................................................................................................................................................................................................................................................................................................193.000.003.00-----------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCATAG.............................................................................................................................................................................................................................................................................................................................................................................193.000.001.00--1.00--1.00-----------------------------------------
.............................................................................................................GGGCATTGCTGTTGCATTA.............................................................................................................................................................................................................................................................................................................................................................................192.000.002.00-----------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................172.000.00----2.00-------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCTTTG.............................................................................................................................................................................................................................................................................................................................................................................192.000.00---------------------1.00-----------------1.00--------
........................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACATTACTCAGCGA.................................................................201.000.001.00-----------------------------------------------
.....................CGCTGGCTGCATTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------------------------------1.00-------
........................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACATTACTCAGTTG.................................................................201.000.00------------------------------1.00-----------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAGAGGCTGGGGAGGC............................201.000.00-----1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CACTCACCCACACATCGG.....................................................................................................................................................181.000.00--------------------------1.00---------------------
.............................................................................................................GGGCATTGCTGTTGCCTTG.............................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00--------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCTGGGGGTTTT...........................171.000.00-----1.00------------------------------------------
.....................................................................................................................CTGTTGCCACTCACACCAAAC...................................................................................................................................................................................................................................................................................................................................................................211.000.001.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGGCTGGGGGTTAGAC.........................201.000.00-----1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................GGGCTCACTGGGCTCTACTT........................................................................................................201.000.00--------------------------------------------1.00---
........................................................................................................................................................................GCTCCCCCCACACCCGCG...................................................................................................................................................................................................................................................................................................................181.000.00--------------------1.00---------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACATTACTCAC....................................................................171.000.001.00-----------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGGGGGTTAGCATG.......................181.000.00-----1.00------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCGCTG.............................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00--------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCTTGC.............................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAGAGGCTGGGGCCG.............................191.000.00-----1.00------------------------------------------
.............................................................................................................GGGCATTGCTGTTGCACT..............................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------1.00----------------------
.............................................................................................................GGGCATTGCTGTTGCCTT..............................................................................................................................................................................................................................................................................................................................................................................181.000.00---------1.00--------------------------------------
.............................................................................................................GGGCATTGCTGTTGCTTCA.............................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------
........................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCACATTACTCAGCTCCA...............................................................221.000.00-------------1.00----------------------------------
.............................................................................................................GGGCATTGCTGTTGCATG..............................................................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00---------------------------------------
..............................................................................................................................................................................................GCTCCCACCCTAGTCGCCA............................................................................................................................................................................................................................................................................................191.000.00--------------1.00---------------------------------
.............................................................................................................GGGCATTGCTGTTGCAAA..............................................................................................................................................................................................................................................................................................................................................................................181.000.00-1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCTGGGGGTTAG...........................1740.250.25---------------------------------------------0.25--
.......................................................................................................................................................................................................................................................................................................AGGGTGCAGGAGAGGC......................................................................................................................................................................................1650.200.20----------------------------------------------0.20-
.........................................................................................................................................................................................................................................................................................GGTGAGCATCCTGGA.....................................................................................................................................................................................................1560.170.17-----------------------------------------------0.17

Antisense strand
CTGAGGACTACAAGGCCCAGGCGCTGGCTGCATTCCACCATAGCGTGGAGGTGAGTGGGTGGGCAGGGCCCACGGGCCACCAGCTTCAGAGACCTGGGGTTCCCTGGGCGGGCATTGCTGTTGCCACTCACACCCAGATGGACGTGTAGCTCCTGTCTTGGGGCACTGGCTCCCCCCACACCCCTGCCATGCTCCCACCCTAGTCAGGGGCGGCCTCCGTGTAACCTAGGAGCCCAGCACCCACAGTCTTGTTCTCACAGTCTGGCTGTTTCCCAACCAAGGGTGAGCATCCTGGAGGGTGCAGGAGAGGCCTTTCACATCAGACCCACTCACCCACACATCACACACCCTGCACAGAGACGCAGGGCAGGGCTCACTGGGCTCTGCATCTGGCTGGTCTCCTGGCCACATTCCACATTACTCAGCCAATTCTGTTGCTGCAGATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGGCCCCCCACCCTGGT
..................................................((((((((((((((...))))))..(((.((((((((((....))))))....))))...)))..........))))))))..((....))................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGAGGCCCCCCCGC..... 183.000.00-------3.00----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCAAGGCTAACCCCCAGCCT................. 2412.002.00------------2.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAATGTGGCCAGGAGACCAGCC............................................................................ 2611.001.00--------------------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCAGATACTGA........................................... 181.000.00-----------------1.00------------------------------
.............................................................................................................................................................................................................................................................CTCACAGTCTGGCTGGAC.............................................................................................................................................................................................................................. 181.000.00----------------------1.00-------------------------
..............................................................................................................................................................................CCCACACCCCTGCCATC.............................................................................................................................................................................................................................................................................................................. 171.000.00----------------------------------1.00-------------