ID: uc003bvl.2_intron_4_0_chr3_10353783_r
GENE: (1)
chr3:10353733-10354312-


(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(20)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(8)
LIVER 		(3)
OTHER 		(20)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
AAACGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGGTATGCTGAGCTTGGCAGCAGAGCGGGCAAGGGGACCACTGGGTAAAAAAGGACTCTGTCCCGGCTGGAGCCCTGGCTCCCTGCCCCTCGTGGTGCCTCTTGTCTGTCTCTTGAGCTTTGGTTGGCTTTTCTGCTACTCTGTCCTCAGCTGAGTAAGGCCCTAAGACCTAAAGCCAGTCCAAAGCAAATAAGAAAAGACAGGTGAGTTTCTCTTCAGGATTATTCATTGCAAGGACTACCCTTCATTCTCAGATTGTTTTCCTACCCACTTTTTTGTTAGATAGACTGTAGGTTATGAAATCGTGGTATTAGTAGGTGATGGGGTTTTTTTGTGTCCTCAGTTGACCAAGTTACAGCTTCCCCCGGTGACTCCTACAGTTGTTTGTTGTAGACATTTAGTAAAACAGTAAATCTGTGGAAGGCGGGACCTGGGGCCGCGGTCTCCCTGCTTTGCTCACTGCACTCTCCCTCTTCCCGCAGTGAACTCGGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGT
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.....)))).....((((((...((((..((((.....))))..(((.....)))...))))...))))))....................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................454.........................................................................530................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189782SRR189783SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGCAGT.................................................23112.0012.00----1.00----1.00-1.00----1.00--2.00------1.00-----------1.00--1.00-------------------1.00---1.001.00----------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGCAGA.................................................2318.005.00---------3.00-----------------2.00--1.00---------1.00---------1.00--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGTGGAAGGCTATC.......................................................................................................197.000.00---7.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGCAG..................................................2215.005.00----------2.001.00--1.00-----------1.00--------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGCA...................................................2115.005.00----------2.00----------2.00--------------------------1.00----------------------------------
..................................................GTATGCTGAGCTTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1714.004.00-------4.00---------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGC....................................................2012.002.00-------------------------------------------------------1.00-------------1.00-------------
......CACCTGGGAGAAGAGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-------------1.00---------1.00-----------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGGTGTGCTGGGCCCC............................2212.002.00--1.00---------------------1.00----------------------------------------------------------
..ACGGCACCTGGGAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00--------1.00----------------------------------------------------------------1.00---------
.......ACCTGGGAGAAGAGCCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00------------------2.00----------------------------------------------------------------
...CGGCACCTGGGAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00--------1.00-----------------------------------------------------------1.00--------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCGGTGACTCCTATAT........................................................................................................................................................191.000.00----1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCGGTGTGCTGGG................................2111.001.00--1.00--------------------------------------------------------------------------------
..............AGAAGAGCCACGAGCATGCGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCGGTGTGCTGGGCCCCCC..........................2711.001.00-1.00---------------------------------------------------------------------------------
.........CTGGGAGAAGAGCCACGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------1.00-----------------------------------------------
..ACGGCACCTGGGAGAAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------------------------------1.00-------------------------------
...........................................................................................................................................................................................................................AAAGCCAGTCCAAAGCAAATA....................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00---------------------------------------------------------------------------------
.....................................................................AGAGCGGGCAAGGGGACCACCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACTCGGTGTGCTGG.................................1911.001.00---------------------------------------------------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACTCTCCCTCTTCCCGCA...................................................2211.001.00----------------------------------------------------1.00------------------------------
....................GCCACGAGCATGCGGGACACGACTCCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.001.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCCCTCTTCCCCCTC..................................................201.000.00----1.00------------------------------------------------------------------------------
...................AGCCACGAGCATGCGGGACACGACTCCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.001.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTACGGCCTGATCC........1821.001.00----------------------------0.50------------------------------------------------0.50-----
..................................................................AGCAGAGCGGGCAAGGGGACCACCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00------1.00----------------------------------------------------------------------------
........................CGAGCATGCGGGACACGACTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------1.00----------------------------------------------------------------------
..........................AGCATGCGGGACACGACTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------------1.00----------------------------------------------------------
.AACGGCACCTGGGAGAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------1.00---------------------------------------------------------
.AACGGCACCTGGGAGAAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------------------------1.00------------
....................................................................................................................................................................GCTTTGGTTGGCTTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------1.00-----------------------------
..........................AGCATGCGGGACACGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------1.00---------------------------------------------------------------------
..ACGGCACCTGGGAGAAGAGCCACGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00------------------------------------1.00----------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TTAGATAGACTGTAGGT.............................................................................................................................................................................................................................................1711.001.00----------------------------------------------------------1.00------------------------
..............................TGCGGGACACGACTCCTCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00----------------------------------------------------------------------------------
..................................................................AGCAGAGCGGGCAAGGGGACCACTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00------1.00----------------------------------------------------------------------------
..............................................................TGGCAGCAGAGCGGGCAAGGGGACCACTGGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................331.000.001.00----------------------------------------------------------------------------------
..........TGGGAGAAGAGCCACGAGCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACTCGGTGTGCTGGGCCCCC...........................2511.001.00--1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................GTGGTATTAGTAGGTGATGGGGTCT...........................................................................................................................................................................................................251.000.00------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCGGTGTGCTGGG................................1911.001.00---------------------------------------------1.00-------------------------------------
...................AGCCACGAGCATGCGGGACACGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00---------------------------------------------------------------------------------
...................AGCCACGAGCATGCGGGACACGACTCCTCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................331.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACTCGGTGTGCTGGGC...............................2111.001.00------------------------------------------------------------------------1.00----------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCGGTGTGCTGGGCC..............................2311.001.00----------------------------1.00------------------------------------------------------
.........................GAGCATGCGGGACACGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------------------
......................CACGAGCATGCGGGACACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------1.00--------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCTCCCTCTTCCCGCAGTT................................................2411.0012.00-----------1.00-----------------------------------------------------------------------
...........................GCATGCGGGACACGACTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGAAGGCGGGACCTGGGG................................................................................................2211.001.00---------------------------------------1.00-------------------------------------------
..............................................................................................................CCGGCTGGAGCCCTGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00-------------------
..............................................................TGGCAGCAGAGCGGGCAAGGGGACCACTGGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00------1.00----------------------------------------------------------------------------
...............................................................................................................CGGCTGGAGCCCTGGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------1.00-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAATCTGTGGAAGGCG..........................................................................................................1911.001.00------------1.00----------------------------------------------------------------------
................AAGAGCCACGAGCATGCGGGACACGACTCCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................321.000.00------------------------------------------------------------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGGTGTGCTGGGCCC.............................2111.001.00---------------1.00-------------------------------------------------------------------
....................................................................CAGAGCGGGCAAGGGGACCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00----------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGGTGTGCTGGGCCCCC...........................2311.001.00---------------1.00-------------------------------------------------------------------
..................GAGCCACGAGCATGCGGGACACGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00---------------------------------------------------------------------------------
.....GCACCTGGGAGAAGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCGGTGTGCTGGGC...............................2211.001.00--1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGGTGTGCTGGGCCCCCCATG.......................2711.001.00--1.00--------------------------------------------------------------------------------
.....GCACCTGGGAGAAGAGCCACGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCCTACAGTTGTTTGTTGT.............................................................................................................................................2411.001.00-----------------------------------------------------------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................TAGATAGACTGTAGGTTATGAA.......................................................................................................................................................................................................................................2211.001.00-----------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGGTGTGCTGGGCCCCCCATGAC.....................2911.001.00--1.00--------------------------------------------------------------------------------
..........................AGCATGCGGGACACGACTCCTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00----------------------------------------------------------------1.00------------------
.........................GAGCATGCGGGACACGACTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGTTTGTTGTAGAC.........................................................................................................................................1811.001.00--------------------------------------------------------------------------1.00--------
..........................AGCATGCGGGACACGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------
...........................GCATGCGGGACACGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTCCCTGCTTTGCTCACTGC.....................................................................2411.001.00-------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCTGATCCTGGC....1620.500.50-----------0.50-----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATGACTACGGCCTGATCCT.......2320.500.50--------------0.50--------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTACGGCCTGATCCTGGC....2220.500.50------------------------------0.50----------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTACGGCCTGATCCT.......1920.500.50-----------------------------0.50-----------------------------------------------------
..ACGGCACCTGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1560.500.50-------------------------------0.17-------------------------------------------------0.170.17
.................................................................................................................................CCTGCCCCTCGTGGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.330.33-------------------------------------------------------------------------------0.33---
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTGTGCTGGGC...............................1560.170.17--------------------------------0.17--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGGACCTGGGG................................................................................................1660.170.17--------------------------------------------------------------------------------0.17--

Antisense strand
AAACGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGGTATGCTGAGCTTGGCAGCAGAGCGGGCAAGGGGACCACTGGGTAAAAAAGGACTCTGTCCCGGCTGGAGCCCTGGCTCCCTGCCCCTCGTGGTGCCTCTTGTCTGTCTCTTGAGCTTTGGTTGGCTTTTCTGCTACTCTGTCCTCAGCTGAGTAAGGCCCTAAGACCTAAAGCCAGTCCAAAGCAAATAAGAAAAGACAGGTGAGTTTCTCTTCAGGATTATTCATTGCAAGGACTACCCTTCATTCTCAGATTGTTTTCCTACCCACTTTTTTGTTAGATAGACTGTAGGTTATGAAATCGTGGTATTAGTAGGTGATGGGGTTTTTTTGTGTCCTCAGTTGACCAAGTTACAGCTTCCCCCGGTGACTCCTACAGTTGTTTGTTGTAGACATTTAGTAAAACAGTAAATCTGTGGAAGGCGGGACCTGGGGCCGCGGTCTCCCTGCTTTGCTCACTGCACTCTCCCTCTTCCCGCAGTGAACTCGGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGT
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.....)))).....((((((...((((..((((.....))))..(((.....)))...))))...))))))....................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................454.........................................................................530................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189782SRR189783SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCTGTGGAAGACGA......................................................................................................... 194.000.00-----4.00-----------------------------------------------------------------------------
...................................................................GCAGAGCGGGCAAGGGCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 193.000.00--------------------------------------------1.00--1.00-------------------1.00---------------
.........................................................................................................................................................................................................................................................................................................................................................TGAAATCGTGGTATTACGA........................................................................................................................................................................................................................ 191.000.00----1.00------------------------------------------------------------------------------
................CATGCTCGTGGCTCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1611.001.00-----------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAAAACAGTAAATACA................................................................................................................... 201.000.00---------------------------------------------------------------------------1.00-------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACCTGGGGCCGCGGGGTC...................................................................................... 231.000.00--------------------1.00--------------------------------------------------------------
....................................................................................................................................................................................CTGCTACTCTGTCCTGAC.............................................................................................................................................................................................................................................................................................................................................................................................. 181.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCCTCTTCCCGCAAGAG............................................... 211.000.001.00----------------------------------------------------------------------------------
.............................................................................................................................GCTCCCTGCCCCTCGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------------------1.00-----------
....................................................................................................................................................................GCTTTGGTTGGCTTTATA.............................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................CTGGCTCCCTGCCCCTCACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-------------------------------------------------1.00---------------------------------
................................................................................GGGGACCACTGGGTAGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00--------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................CACCGGGGGAAGCTGTAACTTGGTCAACTGA.................................................................................................................................................................. 3111.001.00--------------------------------1.00--------------------------------------------------
.............................................................................................................................GCTCCCTGCCCCTCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACTGCACTCTCCCTCGAG........................................................ 221.000.00------1.00----------------------------------------------------------------------------
..............................................................................................................................................................................CTGAGGACAGAGTAGCAGAAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................. 2411.001.00----------------------------------1.00------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCTGTGGAAGACGC......................................................................................................... 191.000.00-----1.00-----------------------------------------------------------------------------
.............................................................................................................................GCTCCCTGCCCCTCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................TGCAAGGACTACCCTTGG............................................................................................................................................................................................................................................................................................. 181.000.00----------------------1.00------------------------------------------------------------
...................................................................................................................................................................................TGAGGACAGAGTAGCAGA............................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00----------------------------------------------1.00------------------------------------
...........................................................................................................................................................................................TCTGTCCTCAGCTGAGTTTCA.................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-------------------------1.00---------------------------------------------------------
.............................................................................................................................GCTCCCTGCCCCTCGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTCTTCCCGCAAA................................................. 181.000.00-------------------------------------------1.00---------------------------------------
....................................................................................................................................................................GCTTTGGTTGGCTTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00-1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGAAATCGTGGTATTACCA........................................................................................................................................................................................................................ 191.000.00----1.00------------------------------------------------------------------------------
.............................................................................................................................................................AGCCAACCAAAGCTCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00-----------------------1.00-----------------------------------------------------------
...........................................................................................................................................................................................TCTGTCCTCAGCTGAGTT....................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------------------------1.00---------------------------------------------
....................................................................................................................................................................GCTTTGGTTGGCTTTTAAC............................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCTGTAACTTGGTCAACTGAGGA........................................................................................................................................................................ 2811.001.00--------------------------------------------------------------1.00--------------------
..............................................................................................AAAAAAGGACTCTGTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.001.00----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGCCGTAGTCATG......... 1820.500.50----------------------------------------------------------------------------0.50------
....GCTCTTCTCCCAGGTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1820.500.50-0.50---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................AAAACAATCTGAGAATG.............................................................................................................................................................................................................................................................................. 1730.330.33----0.33------------------------------------------------------------------------------
..............................................................................................................................CACGAGGGGCAGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1650.200.20-----------0.20-----------------------------------------------------------------------