ID: uc003bvb.2_intron_0_0_chr3_10157504_f.5p
GENE: (1)
chr3:10157454-10157703+


(1)
AGO2.ip
(3)
BRAIN
(8)
BREAST
(12)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(7)
HEART
(1)
HELA
(5)
LIVER
(2)
OTHER
(30)
SKIN
(1)
XRN.ip

Sense strand
GATAATCACCAGCAGCATCAAGAAAATCGCAGACTTTCTCAACTCGTTCGGTCAGCGGGCCAGCAAGGGGAGGCGGGGAGGAGGGAGGCCGCTGAGGTGGTTGGGCTGGGGCGCCGGGGAGATGCTTTGAGAGGACTCCCGCAGCCTTCGGCTGTTGCGGGTTTTCACTTCCTCCTTCAGGTCCCACCTTCTCCCTCCCGCCCTGACCCTCAGGCTCCCGTAGACAGTCTCTGTAGGGTTATCCTGCCCT
..................................................(((..(((.(((((.......(((((............)))))......))))).))).)))..........................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTCAGCGGGCCAGCAAGGGGA...................................................................................................................................................................................2119.009.00-9.00-------------------------------------------------------------------------
..................................................................................................GGTTGGGCTGGGGCGC........................................................................................................................................1618.008.00------1.00-1.00---2.00----1.00-1.00----------------1.00------------1.00-------------------------
....................AGAAAATCGCAGACTTTCT...................................................................................................................................................................................................................1916.006.006.00--------------------------------------------------------------------------
...................AAGAAAATCGCAGACTTTCTC..................................................................................................................................................................................................................2115.005.00---------2.00-1.00--------------------------1.00-------1.00----------------------------
..................................................................................................GGTTGGGCTGGGGCGCG.......................................................................................................................................1714.008.00----------1.00---------1.00-----------------------------1.00----1.00-------------------
...................................................................................................GTTGGGCTGGGGCGC........................................................................................................................................1523.503.50---0.50--1.00-------0.50--------------------------------------------0.50-0.500.50------------
...................................................TCAGCGGGCCAGCAAGGG.....................................................................................................................................................................................1813.003.00-----3.00---------------------------------------------------------------------
...................................................................................................GTTGGGCTGGGGCGCGAAG....................................................................................................................................1923.003.50-------------------------------0.50------------------------1.00-0.50-----0.50---0.50------
....................AGAAAATCGCAGACTTTCTC..................................................................................................................................................................................................................2013.003.001.00---------------1.00------------------------1.00---------------------------------
.................................................................................................TGGTTGGGCTGGGGCGCG.......................................................................................................................................182.000.00----2.00----------------------------------------------------------------------
.......................................................................................................................AGATGCTTTGAGAGGAGAGG...............................................................................................................202.000.00--2.00------------------------------------------------------------------------
..................................................................................................GGTTGGGCTGGGGCGCGA......................................................................................................................................1812.008.00------------------1.00-----------------------1.00--------------------------------
...................................................................................................GTTGGGCTGGGGCGCG.......................................................................................................................................1622.003.50---1.00--0.50-----------------------------------------------------0.50--------------
...................................................................................................GTTGGGCTGGGGCGCGAA.....................................................................................................................................1821.503.50---------------0.50-0.50-------------0.50-------------------------------------------
..................................................................................................GGTTGGGCTGGGGCG.........................................................................................................................................1561.171.17------0.17-----------0.17-----------------------------------------0.17---------0.170.170.170.17-
.................TCAAGAAAATCGCAGACTTTCT...................................................................................................................................................................................................................2211.001.00---------------------------------------------------1.00-----------------------
..............GCATCAAGAAAATCGCAGACTTTCTC..................................................................................................................................................................................................................2611.001.00---1.00-----------------------------------------------------------------------
.................................CTTTCTCAACTCGTTCGA.......................................................................................................................................................................................................181.000.00-----------------------1.00---------------------------------------------------
...................AAGAAAATCGCAGACTTTCTCA.................................................................................................................................................................................................................2211.001.001.00--------------------------------------------------------------------------
...................AAGAAAATCGCAGACTTTCT...................................................................................................................................................................................................................2011.001.001.00--------------------------------------------------------------------------
..............GCATCAAGAAAATCGCAGACTTTCTCAACT..............................................................................................................................................................................................................3011.001.00----------------------1.00----------------------------------------------------
..........................TCGCAGACTTTCTCAACTCG............................................................................................................................................................................................................2011.001.00-----------------------------------------------------1.00---------------------
...........................CGCAGACTTTCTCAACTCG............................................................................................................................................................................................................1911.001.00-------------1.00-------------------------------------------------------------
............................................................................GGAGGAGGGAGGCCGGTAC...........................................................................................................................................................191.000.00---------------------------1.00-----------------------------------------------
.................TCAAGAAAATCGCAGACTT......................................................................................................................................................................................................................1911.001.00--------------------------------1.00------------------------------------------
.................................................................................................TGGTTGGGCTGGGGCAA........................................................................................................................................171.000.00---------------------------------------1.00-----------------------------------
......................AAAATCGCAGACTTTCTCAACTC.............................................................................................................................................................................................................2311.001.00--------------1.00------------------------------------------------------------
.............................................................................................GAGGTGGTTGGGCTGCC............................................................................................................................................171.000.00---------------------1.00-----------------------------------------------------
................ATCAAGAAAATCGCAGACT.......................................................................................................................................................................................................................1911.001.00-----------------------------------1.00---------------------------------------
.................................................................................................TGGTTGGGCTGGGGCGA........................................................................................................................................171.000.00----1.00----------------------------------------------------------------------
...................AAGAAAATCGCAGACTTTC....................................................................................................................................................................................................................1911.001.001.00--------------------------------------------------------------------------
..............................................................................AGGAGGGAGGCCGCTGGGG.........................................................................................................................................................191.000.00----------------------------1.00----------------------------------------------
...............................................................................................................................................................................................................................ACAGTCTCTGTAGGGTT..........1711.001.00--------------------------------------------1.00------------------------------
..................CAAGAAAATCGCAGACTTTCTC..................................................................................................................................................................................................................2211.001.00------------------------------------------------1.00--------------------------
....................AGAAAATCGCAGACTTTCTCA.................................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------
..........................TCGCAGACTTTCTCAACTCGTTCGCCTA....................................................................................................................................................................................................281.000.00----------------------------------------1.00----------------------------------
.................TCAAGAAAATCGCAGACTTTCTC..................................................................................................................................................................................................................2311.001.00-----------1.00---------------------------------------------------------------
...................................................................................................GTTGGGCTGGGGCGCGA......................................................................................................................................1721.003.50--------1.00------------------------------------------------------------------
...................AAGAAAATCGCAGACTTTCTCAACT..............................................................................................................................................................................................................2511.001.00-------1.00-------------------------------------------------------------------
.............................CAGACTTTCTCAACTCGTTCGA.......................................................................................................................................................................................................221.000.00---------------------------------1.00-----------------------------------------
..................................................................................................GGTTGGGCTGGGGCGCGAAG....................................................................................................................................2011.008.00---1.00-----------------------------------------------------------------------
.....................................................................GAGGCGGGGAGGAGGGAAC..................................................................................................................................................................191.000.00----------------------------------------------------1.00----------------------
..................CAAGAAAATCGCAGACTTTCT...................................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------
....................AGAAAATCGCAGACTTTC....................................................................................................................................................................................................................1811.001.00-----------------------------1.00---------------------------------------------
.............................................................AGCAAGGGGAGGCGGGGGA..........................................................................................................................................................................191.000.00-----------------------------------------------1.00---------------------------
.................................................................................................TGGTTGGGCTGGGGCGT........................................................................................................................................171.000.00----------1.00----------------------------------------------------------------
................................................................................................................................................................................TCAGGTCCCACCTTCTATAT......................................................201.000.00---------------1.00-----------------------------------------------------------
...........................CGCAGACTTTCTCAACTCGTTCG........................................................................................................................................................................................................2311.001.00----------------------------------1.00----------------------------------------
.......................AAATCGCAGACTTTCTC..................................................................................................................................................................................................................1711.001.00--------------------------1.00------------------------------------------------
......................................................................AGGCGGGGAGGAGGGCCCT.................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................CCGCCCTGACCCTCAGG....................................1720.500.50----------------0.50----------------------------------------------------------
.ATAATCACCAGCAGCATCAAG....................................................................................................................................................................................................................................2120.500.50-----------------------------------------------------------------0.50---------
...AATCACCAGCAGCATCAAGA...................................................................................................................................................................................................................................2020.500.50------------------------------------------------------------------0.50--------
..TAATCACCAGCAGCATCAAGAAA.................................................................................................................................................................................................................................2320.500.500.50--------------------------------------------------------------------------
........................AATCGCAGACTTTCTCAACT..............................................................................................................................................................................................................2020.500.50-------0.50-------------------------------------------------------------------
........................AATCGCAGACTTTCTCA.................................................................................................................................................................................................................1720.500.50-------------0.50-------------------------------------------------------------
..................................................................GGGGAGGCGGGGAGGAGG......................................................................................................................................................................1850.200.20---------------------------------------------------------------------0.20-----
..................................................................................................GGTTGGGCTGGGGCGTG.......................................................................................................................................1760.171.17-----------------------------------------------------------0.17---------------

Antisense strand
GATAATCACCAGCAGCATCAAGAAAATCGCAGACTTTCTCAACTCGTTCGGTCAGCGGGCCAGCAAGGGGAGGCGGGGAGGAGGGAGGCCGCTGAGGTGGTTGGGCTGGGGCGCCGGGGAGATGCTTTGAGAGGACTCCCGCAGCCTTCGGCTGTTGCGGGTTTTCACTTCCTCCTTCAGGTCCCACCTTCTCCCTCCCGCCCTGACCCTCAGGCTCCCGTAGACAGTCTCTGTAGGGTTATCCTGCCCT
..................................................(((..(((.(((((.......(((((............)))))......))))).))).)))..........................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................AGGTCCCACCTTCTCCCTAGGC.................................................. 222.000.00--2.00------------------------------------------------------------------------
.......................................................................................GCCGCTGAGGTGGTTGTA................................................................................................................................................. 181.000.00------------------------1.00--------------------------------------------------
...................................................................................................................................................................AAGGTGGGACCTGAAGGAGGAAGTGAA............................................................ 2711.001.00-------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................TCCCACCTTCTCCCTCTAA.................................................. 191.000.00------------------------------1.00--------------------------------------------
...................................................................................................................................................................................................................AGACTGTCTACGGGAGCCT.................... 1911.001.00---------------------------------------------------------1.00-----------------
.......................................................................................................................................................................GTGGGACCTGAAGGAGGAAG............................................................... 2011.001.00---------------------------------------------1.00-----------------------------
.............................................................................................................................................................................CCTTCAGGTCCCACCTTT........................................................... 181.000.00------------------------------------------------------1.00--------------------
.......................................................................................................GGCTGGGGCGCCGGGGAGCT............................................................................................................................... 201.000.00-------------------------------------------1.00-------------------------------
...............................................................................................GGTGGTTGGGCTGGGGATT........................................................................................................................................ 191.000.00-------------------------------------1.00-------------------------------------
.............................................................................................................................................................................CCTTCAGGTCCCACCTGA........................................................... 181.000.00-------1.00-------------------------------------------------------------------
..................................................................................................................................................................................GGGAGAAGGTGGGACCT....................................................... 1720.500.50-------------------------------------------------------------------0.50-------
..............................AACGAGTTGAGAAAGTCT.......................................................................................................................................................................................................... 1820.500.50---------------------------------------------------------------0.50-----------
..................................................................CCTCCTCCCCGCCTCCCC...................................................................................................................................................................... 1850.200.20----------------------------------------------------------0.20----------------
................................................................................................................................................................................................GGTCAGGGCGGGAGGG.......................................... 1670.140.14--------------------------------------------------------------------------0.14