ID: uc003bul.2_intron_2_0_chr3_9991857_r.5p
GENE: PRRT3(1)
chr3:9993806-9994055-


(6)
B-CELL
(4)
BRAIN
(10)
BREAST
(25)
CELL-LINE
(17)
CERVIX
(1)
HEART
(5)
LIVER
(3)
OTHER
(1)
RRP40.ip
(35)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
ATCGGCTGCAGGGACGCGCGCAAGGTGAACACGGGGGCTGCGGCGCGCAGGTGAGGAGCTGGCCCAGGGAGGGGGCGATGGCGGGACCCCGACGGGGAGCGTGGCCTGCTGCCCCCGTCGCGGGCGCAGGCGACCAGGCCTGCACGGCGCCCACCCCCATCCAGGACACTGCGGGAAGGCGCGGAGCCAGGGAGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGAGGTAACCCGAGATGGACCAGC
..................................................................................(((.(((((((((((.((((.....)).)))))))))).))).((((((......))))))......)))....((.....)).....................................................................................
................................................................................81...................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................ACGGCGCCCACCCCCGCGG........................................................................................1926.000.005.001.006.00------1.003.00----1.00-----1.00-----1.002.00---1.00-----------------1.00------------------------1.001.001.00-----------------------------------
.....................................................................................ACCCCGACGGGGAGCCA....................................................................................................................................................1721.000.00-4.00-2.003.00-2.00-----------------------1.00-1.00------1.00-----1.00--------------1.00------------1.00----1.00-------1.001.00--1.00----------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGACGGT............................2010.000.00-------4.00-----------------------2.00------1.00---1.00----------1.00--1.00--------------------------------------------------------
......................................................................................CCCCGACGGGGAGCGA....................................................................................................................................................1616.001.00-2.00-2.001.00------------------------------------------------------------------1.00-----------------------------------------
...............................................................................................................................................ACGGCGCCCACCCCCGCG.........................................................................................184.000.001.00-1.00-------------------------------1.00--------------1.00---------------------------------------------------------------
.....................................................................................ACCCCGACGGGGAGCC.....................................................................................................................................................164.000.00----2.00-1.00-------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................CACGGCGCCCACCCCCGCGG........................................................................................204.000.00---2.00-------------------------------1.00--------------------------1.00--------------------------------------------------
..........................GAACACGGGGGCTGCGGCG.............................................................................................................................................................................................................1913.003.00---------------------------------2.00-----------------1.00-------------------------------------------------------------
............................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGAGA.....................2502.002.00-----------1.00-1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGGAGGAT......................262.000.00--------1.00--------------------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................................AGAGGAGACGGAGGAGGAGGAGGAGG..............................2612.002.00-----2.00-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGAGAG....................2602.002.00-----------2.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGGAGGAATC....................282.000.00------------------------2.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGATTA.............................192.000.00-----------------------------------------------------------1.00--------------1.00--------------------------------------
..................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGAGGATTT...............252.000.00----------------2.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGT...........................212.000.00---------------------1.00------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGGAGGAG......................2732.002.00---------------------------------------0.330.33---------------------------------------------------------0.33---0.330.330.33--------
........................................................................................CCGACGGGGAGCGTGGCG................................................................................................................................................181.000.00--------------------------1.00--------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGGAGGAG......................2601.001.00-----------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................CACGGCGCCCACCCCCGC..........................................................................................181.000.00-------------------1.00---------------------------------------------------------------------------------------------
............................ACACGGGGGCTGCGGTGGA...........................................................................................................................................................................................................191.000.00------------------------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................AGACGGAGGAGGAGGACCCT...............................201.000.00-----1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................ACCCCGACGGGGAGCCAAA..................................................................................................................................................191.000.00--------------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................GGAGGAGGAGGAGGAGGAGAG....................2101.001.00-------------1.00---------------------------------------------------------------------------------------------------
......................................................................................CCCCGACGGGGAGCGT....................................................................................................................................................1611.001.00------------------------------------------------------1.00----------------------------------------------------------
......................................................................................CCCCGACGGGGAGCG.....................................................................................................................................................1511.001.00----------------------------------1.00------------------------------------------------------------------------------
.........................................GGCGCGCAGGTGAGGGGGC..............................................................................................................................................................................................191.000.00---------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGACACTGCGGGAAGGCGCGGAGCCAGGGAG........................................................3211.001.00-------------------------------------1.00---------------------------------------------------------------------------
..............................................................................................................................................CACGGCGCCCACCCCCTCGG........................................................................................201.000.00-----------------------------------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGATAA..........................221.000.00-----------------------------------------------------------------------------------------1.00-----------------------
...............................CGGGGGCTGCGGCGCATCG........................................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00---------------------------------------------
...................................................................................GGACCCCGACGGGGAGCCA....................................................................................................................................................191.000.00-------------------------------------------------------------------------------------1.00---------------------------
..CGGCTGCAGGGACGCGCGCA....................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------------------------------------1.00------------------
................................................................................................................................................................................................AGAGAGGAGACGGAGGAGGAG.....................................2111.001.00-------------------------------------------------------------------------------------------------1.00---------------
....................................................................................GACCCCGACGGGGAGCCA....................................................................................................................................................181.000.00------1.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................GAGACGGAGGAGGAGGAGGAAA..............................221.000.00-----------------------------------------------------------------1.00-----------------------------------------------
...............................................................................................................................................................TCCAGGACACTGCGGGAAGGCGCGGA.................................................................2611.001.00-------------------------------------------------------------------------------1.00---------------------------------
...............................................................................................................CCCCCGTCGCGGGCGGG..........................................................................................................................171.000.00-----------------------1.00-----------------------------------------------------------------------------------------
.................................................................AGGGAGGGGGCGATGGA........................................................................................................................................................................171.000.00---------------------------------------------------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGTG............................211.000.00----------------------------------------------------------1.00------------------------------------------------------
................................GGGGGCTGCGGCGCGTTCA.......................................................................................................................................................................................................191.000.00-----------------------------------------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGACGT.............................191.000.00------------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................GAGACGGAGGAGGAGGACCCT...............................211.000.00-----1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................ACCCCGACGGGGAGCCATA..................................................................................................................................................191.000.00--------------1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................GAGGAGACGGAGGAGCGGC....................................191.000.00-------------------------------------------------------------1.00---------------------------------------------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAGGAAA..............................201.000.00-------------------1.00---------------------------------------------------------------------------------------------
..............................................................CCCAGGGAGGGGGCGATGGCG.......................................................................................................................................................................2111.001.00------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGACGAG..................................191.000.00------------------------------1.00----------------------------------------------------------------------------------
.........................................GGCGCGCAGGTGAGGGGGG..............................................................................................................................................................................................191.000.00---------------1.00-------------------------------------------------------------------------------------------------
................................................AGGTGAGGAGCTGGCCTTG.......................................................................................................................................................................................191.000.00--------------------------------------------------------------------1.00--------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGGAGT........................241.000.00------------------------------------------------------------------------------------------------1.00----------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAGGAT...............................191.000.00-----------------------------------------------------------------------------------------------1.00-----------------
....................CAAGGTGAACACGGGGGCTGCG................................................................................................................................................................................................................2211.001.00----------------------1.00------------------------------------------------------------------------------------------
...............................................................................................................CCCCCGTCGCGGGCGGGC.........................................................................................................................181.000.00----------------------------------------------------1.00------------------------------------------------------------
.................................................................................................................................................................CAGGACACTGCGGGAACC.......................................................................181.000.00------------------------------------------------1.00----------------------------------------------------------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAGGAAT..............................201.000.00----------------------------------------------------------------------------------------1.00------------------------
..................................................................................................................CCGTCGCGGGCGCAGGA.......................................................................................................................171.000.00--------------------------------------------------------------------------------1.00--------------------------------
.....................................................................................ACCCCGACGGGGAGCCAAT..................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------1.00-------------------
..................................GGGCTGCGGCGCGCAGAG......................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00---------------------------------------------------------
.....................................................AGGAGCTGGCCCAGGGAGGGGGCG.............................................................................................................................................................................2411.001.00-----------------------------------------------------------------------------------1.00-----------------------------
.............................CACGGGGGCTGCGGCGACG..........................................................................................................................................................................................................191.000.00---------------------------1.00-------------------------------------------------------------------------------------
.......................GGTGAACACGGGGGCTGCGGC..............................................................................................................................................................................................................2111.001.00-----------------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGTTT..............................191.000.00----------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGAGTAA...................271.000.00--------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................ACGGCGCCCACCCCCGCAG........................................................................................191.000.001.00----------------------------------------------------------------------------------------------------------------
..............................ACGGGGGCTGCGGCGCGC..........................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAAAAT...............................191.000.00--------1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGGAAG..............................231.000.00-------------1.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGGAATT.............................241.000.00-------------------------------------------1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGAGGAGGGGAG.......................251.000.00-------------------------------------------------------------------------------------------1.00---------------------
............................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGAGAGTTA.................2901.002.00-----------------------------1.00-----------------------------------------------------------------------------------
.............................................................................................................................................GCACGGCGCCCACCCCCGCGG........................................................................................211.000.001.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CGGAGGAGGAGGAGGACGA.............................191.000.00----------------------------------------------------------------------1.00------------------------------------------
................................................AGGTGAGGAGCTGGCGACC.......................................................................................................................................................................................191.000.00---------------------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGGAG.........................2440.750.75--------0.50---------------------------------0.25----------------------------------------------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGG.................................2050.600.60------------------------------------0.40------0.20---------------------------------------------------------------------
........................................CGGCGCGCAGGTGAGG..................................................................................................................................................................................................1620.500.50-----------------------------------------------------------------------------------------------------0.50-----------
....................................................................................................................GTCGCGGGCGCAGGC.......................................................................................................................1520.500.50---------------------------------------------------------------------------------------------------0.50-------------
......................................................................................................................................................................................................GAGACGGAGGAGGAGGAGG.................................1970.430.43-------------------0.14-------------------------0.14---------------------------------------------------------------0.14---
................................................................................................................................................CGGCGCCCACCCCCA...........................................................................................1590.330.33--------------------0.11---------------------------------------------------------------------------------0.11--------0.11-
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGGAGGA.......................2640.250.25-----------------------------------------0.25-----------------------------------------------------------------------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGGAGG........................2540.250.25----------------------------------------------------------------------------------------------------------0.25------
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGG...........................2280.250.25--------0.12-----------------------------------------------------------------------------------------------------0.12--
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGGC................................2150.200.60-----------------------------------------------------------------------------------------------------------0.20-----
.........................................................................................................................................................................................................ACGGAGGAGGAGGAGGAGGAGGA..........................2360.170.17------------------------------------------------------------------------------------------------------------0.17----
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAG..................................1980.120.12----0.12------------------------------------------------------------------------------------------------------------
................................................................................................................................................CGGCGCCCACCCCCAGG.........................................................................................1790.110.33----------------------------------------------------------------------------------------------------------------0.11

Antisense strand
ATCGGCTGCAGGGACGCGCGCAAGGTGAACACGGGGGCTGCGGCGCGCAGGTGAGGAGCTGGCCCAGGGAGGGGGCGATGGCGGGACCCCGACGGGGAGCGTGGCCTGCTGCCCCCGTCGCGGGCGCAGGCGACCAGGCCTGCACGGCGCCCACCCCCATCCAGGACACTGCGGGAAGGCGCGGAGCCAGGGAGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGAGGTAACCCGAGATGGACCAGC
..................................................................................(((.(((((((((((.((((.....)).)))))))))).))).((((((......))))))......)))....((.....)).....................................................................................
................................................................................81...................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGGAGCC............................. 242.000.00----------------------------------------------------------------1.00---------------------------1.00--------------------
................................................................................................................................................CGGCGCCCACCCCCAGCGG....................................................................................... 1992.000.00---------2.00-------------------------------------------------------------------------------------------------------
..................................................................................GGGACCCCGACGGGGAGA...................................................................................................................................................... 181.000.00------------------------------------1.00----------------------------------------------------------------------------
...........................................................................................................................................................................CGGGAAGGCGCGGAGCTTCG........................................................... 201.000.00--------------------1.00--------------------------------------------------------------------------------------------
....................................................................................GACCCCGACGGGGAGACCA................................................................................................................................................... 191.000.00--------------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................GGTAACCCGAGATGGAAAG.. 191.000.00-------------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................CTCCTCCGTCTCCTCTCTCCCTGGCTCCGC........................................ 3011.001.00----------------------------------------------1.00------------------------------------------------------------------
.......................................................................................................................TGGTCGCCTGCGCCCGC.................................................................................................................. 1731.001.00--------------------------------------0.33-----------------------------------------------------------0.33------0.33-------
...............................................................................................................CCCCCGTCGCGGGCGGGC......................................................................................................................... 181.000.00-----------------------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CCTCCTCCTCCTCCTCCGTCTCC.............................. 2311.001.00--------------------1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................GCCAGGGAGAGAGGAGACTG............................................. 201.000.00-------------------------1.00---------------------------------------------------------------------------------------
............................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGAGGCGC.................. 281.000.00------------1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAGGAGGAGGACGCC...................... 281.000.00------------1.00----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................GAGACGGAGGAGGAGGTGCC................................ 201.000.00---1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CCATCTCGGGTTACC...... 1511.001.00---------------------------------------------------------------------------------1.00-------------------------------
.............................................................................................................................GGTGGGCGCCGTGCAGGCCTGGTCGCCTGC............................................................................................... 3011.001.00----------------------------------------------------------------------------------1.00------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAACC................................ 211.000.00--------------------------------------------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................GACGGAGGAGGAGGAGCTCA.............................. 201.000.00------------------1.00----------------------------------------------------------------------------------------------
.................................GGGGCTGCGGCGCGCAAGCT..................................................................................................................................................................................................... 201.000.00-----1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGAGACGGAGGAGGAGGAGGAGC.............................. 231.000.00---------------------------------------------------------------1.00-------------------------------------------------
........................................................................................................................................................ACCCCCATCCAGGACTCT................................................................................ 181.000.00------------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCTCCCTGGCTCCGC..................................................... 1720.500.50----------------------------------------------------------------------------------------------------0.50------------
...............................................................................................................................................................................CCTGGCTCCGCGCCTT........................................................... 1630.330.33------------------0.33----------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCTCCTCCTCCTCCTCCGTC.............................. 2060.170.17-------------------------------------0.17---------------------------------------------------------------------------
........................................................................................................................................................................................................TCCTCCTCCTCCTCCTCCGTC............................. 2160.170.17-------------------------------------0.17---------------------------------------------------------------------------
...................................................................................................................................................TGGATGGGGGTGGGCG....................................................................................... 1670.140.14--------------------------------------------0.14--------------------------------------------------------------------
...........................................................GCCCCCTCCCTGGGCCA.............................................................................................................................................................................. 1770.140.14----------------------------------------------0.14------------------------------------------------------------------