ID: uc003brs.1_intron_6_0_chr3_9476170_f
GENE: SETD5(7)
chr3:9476120-9476557+


(3)
B-CELL 		(5)
BRAIN 		(5)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(4)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
CCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGTAAGATCCTGTTCCATCTAAATTTAAGTCTGGGTTGCTGGGATTAGGGTTTCTTACAAGTAGGGAAAAGCTCAAAGTATTCTTTCTTGTGTTTGTTAATGTAGATGATTCCTTAGTGCTCCTTGGCTCGAATTCTCTGCACTAGGTGAGAATTGCTGACAACAAGGAATGAGAGATTGATGTTAAAGCTATTGAATTTGATATGAAATTTAATGTCCTGGAAACATTTGGTAGGTGGGAGGGAGGGGGTAGCATATGCAGAGACACTTCGCCCATGTGTGCTATGATGTGATGCATGCTGTTGGAAGGACTACTTTAAGTTTATTTTCCCTCTTTAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACA
........................................................................................................................................................................................................(((.(((((((.(((...........))).))))..))).)))...................................................................................................................................................................................................
..............................................................................................................................................................................................191......................................................248............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR343337
...................................................................................................................................................................................................GTGAGAATTGCTGACAACAA...............................................................................................................................................................................................................................2015.005.004.00----------------------1.00--------------------------------
................................................................................................................................................................................................................................GATTGATGTTAAAGCTATTG..................................................................................................................................................................................................2014.004.00--4.00-----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................TGCATGCTGTTGGAAGGACTACTTTAAGTT..................................................................3013.003.00-----3.00--------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCATCGGCGGAAGCAGGAC.2213.003.003.00-------------------------------------------------------
............................................................................................................................................................................................................GCTGACAACAAGGAATGAG.......................................................................................................................................................................................................................1912.002.00-2.00------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGACTTCATCGGCGGAAGCAGGACT302.000.00---2.00----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGTTATTAGACTTCATCGG.............2312.002.002.00-------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTCATCGGCGGAAGCA.....2012.002.00----1.00------------------------------------------------1.00--
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCATCGGCGGAAGCA.....1812.002.00-1.00------------------1.00-----------------------------------
..................................................................................................................................................................................CGAATTCTCTGCACTAG...................................................................................................................................................................................................................................................1712.002.00--------------1.00-----------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................TAGCATATGCAGAGACACTTCGCCCA.................................................................................................................2612.002.00-2.00------------------------------------------------------
.................GGATGGCTTCCTTCTCAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-2.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATCGGCGGAAGCAGGACCAC242.000.00---------------1.00-------------------------1.00--------------
..........................................................................................................................................................................................................................................................................................................................................................TGCTGTTGGAAGGACTACTTTAAGT...................................................................2512.002.00--------1.00-------------------------------1.00---------------
................................................................................................................................................................................CTCGAATTCTCTGCACTAGGT.................................................................................................................................................................................................................................................2111.001.00--------------------------------------------1.00-----------
...............................................................................................................................................................................GCTCGAATTCTCTGCACTAGGT.................................................................................................................................................................................................................................................2211.001.00-----------------------------------1.00--------------------
........................................................................................................TACAAGTAGGGAAAAGCTCAAAG.......................................................................................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTCATCGGCGGAAGCAGG...2211.001.00------------------1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGACTTCATCGGCGGA.........2011.001.001.00-------------------------------------------------------
............................................................................................................................................................................TTGGCTCGAATTCTCTGCACTAG...................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------
...................................................................................................................................................AATGTAGATGATTCCTTAGTGCT............................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00-----
................................................................................................................................................................................................................ACAACAAGGAATGAGCA.....................................................................................................................................................................................................................171.000.00---------1.00----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTCATCGGCGGAAGC......1911.001.00-1.00------------------------------------------------------
................................................................................................................................................................................................................ACAACAAGGAATGAGTAC....................................................................................................................................................................................................................181.000.00------------------------1.00-------------------------------
.........................................................................................................................................TGTGTTTGTTAATGTAGATG.........................................................................................................................................................................................................................................................................................2011.001.00-------------------------------------1.00------------------
.....................................................................................................................................................................................................................AAGGAATGAGAGATTGATGTT............................................................................................................................................................................................................2111.001.00---------------------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCCTCTTTAGGGGAATGAGCAGG.....................................2811.001.00----------------------------1.00---------------------------
...TGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACT.................................................................................................................................................................................................................................................................................................................................................................................................................3411.001.00-------------------------------------------1.00------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCATCGGCGGAAGCAGGACA2411.001.00----------------------1.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TTTAGGGGAATGAGCAGG.....................................1811.001.00--------1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TGTTGGAAGGACTACTTTAAGTT..................................................................2311.001.001.00-------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCATCGGCGGAAGCA.....1911.001.00----------------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................GTGATGCATGCTGTTGGAAGGACTACT.........................................................................2711.001.00-------------------1.00------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGATGCATGCTGTTGGAAGGACTACCTT.......................................................................281.000.00-----------1.00--------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGAAGCAGGAC.1511.001.00----------------------------------------------------1.00---
........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGACTTCATCGGCGGAA........2211.001.00-------------1.00------------------------------------------
...............................................................................................................................................................................................................................AGATTGATGTTAAAGCTATTGAAT...............................................................................................................................................................................................2411.001.00------1.00-------------------------------------------------
....................................................................................................................................TTTCTTGTGTTTGTTAATGTAGATGATTCCTT..................................................................................................................................................................................................................................................................................3211.001.00------------1.00-------------------------------------------
..........................CCTTCTCAACTGTGACA...........................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------------------------------------1.00-
....................................................................................................................................................................................................................................................................................................................................................GATGCATGCTGTTGGAAGG...............................................................................1911.001.00----1.00---------------------------------------------------
....GTGGTCTTTCTCAGGATGGCTTCCTT........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------1.00------------------------------
.......................CTTCCTTCTCAACTGTGACA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------
................AGGATGGCTTCCTTCTCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------1.00---------------------------------------
.....................................................................................................................................................................................................................AAGGAATGAGAGATTGATGTTA...........................................................................................................................................................................................................2211.001.00-----------------1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGGCGGAAGCAG....1511.001.00------------------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................................................................................................TGCTGTTGGAAGGACTACTTT.......................................................................2111.001.00------------------------------------------------1.00-------
................................................................................TGGGTTGCTGGGATTAGGGTTTC...............................................................................................................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------
.......................................................................................................................................................................GCTCCTTGGCTCGAATTCTCTGCACTA....................................................................................................................................................................................................................................................2711.001.001.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................ATGTGATGCATGCTGTTGGAAG................................................................................2211.001.00----1.00---------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGGGGGAAGGTTAT..........................1911.001.00--------------------------------1.00-----------------------
.................................................................ATCTAAATTTAAGTCTGGG..................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------1.00----------------------------
.....................................................................................................................................................................................ATTCTCTGCACTAGGTGAGAATTGCTGAAA...................................................................................................................................................................................................................................301.000.00----------1.00---------------------------------------------
....................................................................................................................................................................AGTGCTCCTTGGCTCGAATTC.............................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00--------
....................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGAGCAGGGGGAAGGTT............................2211.001.00--------------------------------------1.00-----------------
........................................................................................................TACAAGTAGGGAAAAGCTCAAAGTA.....................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------1.00----
........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGACTTCATCGGCGGAAT.......2311.001.00----------------------------------------------1.00---------
...............................................................................................................................................................................................................................................................................................GGAGGGAGGGGGTAGCATGGTT.................................................................................................................................221.000.00---------1.00----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGACTTCATCGGCGGAAGCAGGAC.2511.001.00-------------------------------1.00------------------------
......................................................................................................................................................................................................................................................................................TGGTAGGTGGGAGGGAGGGGGTAGC.......................................................................................................................................2511.001.00---------------------------------------1.00----------------
.............................................................................................................................................................................................................................................................................................................................................ATGATGTGATGCATGCTGTAAAC..................................................................................231.000.00-1.00------------------------------------------------------
.......................................................................................................TTACAAGTAGGGAAAAGCTCAA.........................................................................................................................................................................................................................................................................................................................2211.001.001.00-------------------------------------------------------
...................ATGGCTTCCTTCTCAACTGTGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------1.00--------------------------------------------
..............TCAGGATGGCTTCCTTCTCAACTGTGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACTTCATCGGCG...........1611.001.00----------1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCATCGGCGGAAGC......1811.001.00---1.00----------------------------------------------------
.......................................................................................................................................................................................................................GGAATGAGAGATTGATGTTAAAGCTATTGAA................................................................................................................................................................................................3111.001.00------------------------------------1.00-------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGACTTCATCGGCGGAAGCAGGA..2811.001.00-------------------------------------------------1.00------
..........................................................................................................................................................ATGATTCCTTAGTGCTCCT.........................................................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00-------------
...................................................................................................................................................................................................................ACAAGGAATGAGAGATTGA................................................................................................................................................................................................................1911.001.001.00-------------------------------------------------------
............................................................................................ATTAGGGTTTCTTACAAG........................................................................................................................................................................................................................................................................................................................................1820.500.50------0.50-------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................TGTGATGCATGCTGTTGGA..................................................................................1920.500.50-------------0.50------------------------------------------
....................................................................................................................................................................................AATTCTCTGCACTAG...................................................................................................................................................................................................................................................1550.200.20-------------------------------------------------------0.20

Antisense strand
CCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGTAAGATCCTGTTCCATCTAAATTTAAGTCTGGGTTGCTGGGATTAGGGTTTCTTACAAGTAGGGAAAAGCTCAAAGTATTCTTTCTTGTGTTTGTTAATGTAGATGATTCCTTAGTGCTCCTTGGCTCGAATTCTCTGCACTAGGTGAGAATTGCTGACAACAAGGAATGAGAGATTGATGTTAAAGCTATTGAATTTGATATGAAATTTAATGTCCTGGAAACATTTGGTAGGTGGGAGGGAGGGGGTAGCATATGCAGAGACACTTCGCCCATGTGTGCTATGATGTGATGCATGCTGTTGGAAGGACTACTTTAAGTTTATTTTCCCTCTTTAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACA
........................................................................................................................................................................................................(((.(((((((.(((...........))).))))..))).)))...................................................................................................................................................................................................
..............................................................................................................................................................................................191......................................................248............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR343337
..........TTTCTCAGGATGGCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00---------------------1.00----------------------------------
...............................................................................................................AGGGAAAAGCTCAAAGGCGC................................................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................GGTAGGTGGGAGGGAGTGCC........................................................................................................................................... 201.000.00------------1.00-------------------------------------------
.......................................................................................................................................................................................................................................................................................GGTAGGTGGGAGGGAGGCATT.......................................................................................................................................... 211.000.00---------------------------------------------1.00----------
.......................................................................................................................................................................................................................................................................TGTCCTGGAAACATTTCTAG........................................................................................................................................................... 201.000.00-------1.00------------------------------------------------