ID: uc003brs.1_intron_18_0_chr3_9495553_f.3p
GENE: SETD5(19)
chr3:9505909-9506158+


(1)
AGO2.ip
(5)
B-CELL
(1)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(3)
HEART
(4)
LIVER
(1)
OTHER
(9)
SKIN

Sense strand
GATAGAATGTTTTCAGAGTTATTTTAAGCATGGTAATTAAAGAGTTTCTTTGGGATTTTGGTTGGATTGGAGGAGATAACTTAATGGGATGAGGCAGAAAACAGTTAAGAGCCATTGTAGATTACAGATTAATGGCTTTACTGTAGAGCCTTAAATTAATCTGTGGTTTCAAACTCTCATCCAAGCTTTGTGTTTCACAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAG
.......................................................((((.(((..(((....(((....))).....)))..))).))))......................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040031(GSM532916)
G013T. (cervix)
..................................................................................AATGGGATGAGGCAGGAAT.....................................................................................................................................................1935.000.0017.004.002.002.00-4.00----2.001.00----1.00----1.00----------1.00------
.................................................................................TAATGGGATGAGGCAGGAAT.....................................................................................................................................................208.000.006.00------1.00------------------1.00------------
...............................................CTTTGGGATTTTGGTTGG.........................................................................................................................................................................................1812.002.002.00--------------------------------------
.................................................................................................................ATTGTAGATTACAGATTAATGGCTTT...............................................................................................................2612.002.00----2.00----------------------------------
..............................................................................................CAGAAAACAGTTAAGAGCCATTGTA...................................................................................................................................2511.001.00-------------------------------1.00-------
..................................................................................AATGGGATGAGGCAGGCAT.....................................................................................................................................................191.000.00-------------------1.00-------------------
...........................................................................................................AGAGCCATTGTAGATTACAGATTAAT.....................................................................................................................2611.001.00------1.00--------------------------------
.....................................................................................................................................................................................................CAGACTTGTTGAGCCCATTAAAGAAATGGA.......................3011.001.00-----------------------------1.00---------
....................................................................................TGGGATGAGGCAGAAAAAA...................................................................................................................................................191.000.00--------------------1.00------------------
..........................................................................................................................TACAGATTAATGGCTTTACTGTAGAGC.....................................................................................................2711.001.00-------------1.00-------------------------
..................................................................................AATGGGATGAGGCAGAAAACAGTT................................................................................................................................................2411.001.00-------------------------1.00-------------
..................................................TGGGATTTTGGTTGGATTGGAGGAG...............................................................................................................................................................................2511.001.00----1.00----------------------------------
.............................................................................................................AGCCATTGTAGATTACAGAT.........................................................................................................................2011.001.00----------------------------1.00----------
.................................................................................TAATGGGATGAGGCAGGTG......................................................................................................................................................191.000.00-------1.00-------------------------------
..................................................................................AATGGGATGAGGCAGGACG.....................................................................................................................................................191.000.00-1.00-------------------------------------
...................................................................................ATGGGATGAGGCAGAAAACAGTT................................................................................................................................................2311.001.00--1.00------------------------------------
...................................................................................ATGGGATGAGGCAGAAAAA....................................................................................................................................................191.000.00--------------1.00------------------------
..................................................................................AATGGGATGAGGCAGAAAA.....................................................................................................................................................1921.001.00-----------------------------------0.500.50--
.................................................................................TAATGGGATGAGGCAGAAA......................................................................................................................................................1911.001.00-----------------------1.00---------------
............................................................................................................................CAGATTAATGGCTTTACTGTAG........................................................................................................2211.001.00------------------------------1.00--------
............................................................................................................................................................................................................................AAATGGAAGTCTCGCTAG............181.000.00--------1.00------------------------------
.................................................TTGGGATTTTGGTTGTG........................................................................................................................................................................................171.000.00---------------------------1.00-----------
.........................................................................................................................TTACAGATTAATGGCTTTACTGTAGA.......................................................................................................2611.001.00------1.00--------------------------------
.................................................TTGGGATTTTGGTTGGAGAG.....................................................................................................................................................................................201.000.00------------------------1.00--------------
..................................................................................AATGGGATGAGGCAGTGGG.....................................................................................................................................................191.000.00------------1.00--------------------------
...........................................................................................................................................................................................................................GAAATGGAAGTCTCGCTAT............1911.001.00--------1.00------------------------------
.........................................................................................................................................................................................................................AAGAAATGGAAGTCTCGCTATCTGA........2511.001.00---------------------------------1.00-----
................................................................................TTAATGGGATGAGGCAGAAAACAGTTAAGAGCC.........................................................................................................................................3311.001.00-----------------1.00---------------------
..................................................................................AATGGGATGAGGCAGGACA.....................................................................................................................................................191.000.00---1.00-----------------------------------
..............................................................................................................................................................................................................................ATGGAAGTCTCGCTATCTGATGGAG...2511.001.00----1.00----------------------------------
.................................................................................................................ATTGTAGATTACAGATTAATGGCTT................................................................................................................2511.001.00--1.00------------------------------------
..............................................................................................................GCCATTGTAGATTACAGATTAA......................................................................................................................2211.001.00------------------1.00--------------------
...................................................................................ATGGGATGAGGCAGAACAA....................................................................................................................................................191.000.00---1.00-----------------------------------
.....................................................................................................................................................................................................................................TCTCGCTATCTGATGG.....1611.001.00------1.00--------------------------------
..................................................................................AATGGGATGAGGCAGAAAAA....................................................................................................................................................2020.501.00-----------0.50---------------------------
..................................................................................AATGGGATGAGGCAGAAAAAAAA.................................................................................................................................................2320.501.00------------0.50--------------------------
..................................................................................AATGGGATGAGGCAGAAAAAA...................................................................................................................................................2120.501.00----------------------------------0.50----
..............AGAGTTATTTTAAGCA............................................................................................................................................................................................................................1630.330.33-------------------------------------0.33-
..................................................................................AATGGGATGAGGCAGAA.......................................................................................................................................................1740.250.25----------------------------------0.25----
.............................................................................................................................................................................CTCTCATCCAAGCTTTGT...........................................................1840.250.25--------------------------------------0.25
..................................................................................AATGGGATGAGGCAGAACCA....................................................................................................................................................2040.250.25-----------0.25---------------------------

Antisense strand
GATAGAATGTTTTCAGAGTTATTTTAAGCATGGTAATTAAAGAGTTTCTTTGGGATTTTGGTTGGATTGGAGGAGATAACTTAATGGGATGAGGCAGAAAACAGTTAAGAGCCATTGTAGATTACAGATTAATGGCTTTACTGTAGAGCCTTAAATTAATCTGTGGTTTCAAACTCTCATCCAAGCTTTGTGTTTCACAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAG
.......................................................((((.(((..(((....(((....))).....)))..))).))))......................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040031(GSM532916)
G013T. (cervix)
..................................................................................................................................................................................................................................CAGATAGCGAGACTT......... 1522.002.00---------2.00-----------------------------
......................................................................................................AGTTAAGAGCCATTGCTG.................................................................................................................................. 181.000.00----------------------1.00----------------
...................................................................................................................................................................................TCCAAGCTTTGTGTTTAAAT................................................... 201.000.00---------------1.00-----------------------