ID: uc003brp.2_intron_0_0_chr3_9432182_r.5p
GENE: (2)
chr3:9433189-9433438-


(2)
AGO1.ip 		(3)
AGO2.ip 		(4)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(19)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GATCAAATTTGAATGGATGAGGAGTTGCTTTTTAGGGATGAGCAAAGAAAGTGGTTTCTCGAGATGGAATCTACTGGTGAAGTTGCTGTGAACATTGTTAAAATGCCAATAAAGGATTTAGGAATTACAGAAACCTGGTTGATAAAGCAGTGCCAGGGTGTGAGAGAGTTGACTTCAATTTTGAAATAAGTTCCACTGGCTGGGTGTGGTGGCTCACACCTGCAATCCCAGTACTTTAGGAGGCCGAGAC
....................................................(((((((...(((.((((((..((((......((((....))..))......)))).....))))))....)))..)))))))...................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM532878(GSM532878)
G691T. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
.....................................................................................................................TTAGGAATTACAGAAGATC..................................................................................................................1925.000.0025.00-----------------------------------------------------------
.....................................................................................................................TTAGGAATTACAGAAGCTG..................................................................................................................1916.000.00--12.00-2.00--2.00----------------------------------------------------
.....................................................................................................................TTAGGAATTACAGAAGCT...................................................................................................................1812.000.00--5.00-6.00--------------------------------1.00----------------------
.....................................................................................................................TTAGGAATTACAGAAGC....................................................................................................................177.000.004.00-----3.00-----------------------------------------------------
..................................GGGATGAGCAAAGAAAGTAGAT..................................................................................................................................................................................................226.000.00----------------------1.00----1.00----1.00----------1.00---1.00--1.00---------
.....................................................................................................................TTAGGAATTACAGAAATC...................................................................................................................185.000.005.00-----------------------------------------------------------
.............................................................................................................TAAAGGATTTAGGAATTACAGAAACCT..................................................................................................................2714.004.00---4.00--------------------------------------------------------
..................................GGGATGAGCAAAGAAAGTAGA...................................................................................................................................................................................................214.000.00-------------2.00--------------1.00--------------------------1.00----
................................................................................................................................................AAGCAGTGCCAGGGTGTGAGAGAGTCGAC.............................................................................293.000.00-3.00----------------------------------------------------------
...................................GGATGAGCAAAGAAAGTGGTTA.................................................................................................................................................................................................2203.001.00-----------2.00----1.00-------------------------------------------
....................................................................................................................................................................................................TGGCTGGGTGTGGTGGCTCACTAA..............................242.000.00---------------------------------1.001.00-------------------------
.......................................................................TACTGGTGAAGTTGCTGTGAACATT..........................................................................................................................................................2512.002.00---2.00--------------------------------------------------------
.........................................................................................................CCAATAAAGGATTTAGGAATTACA.........................................................................................................................2412.002.00---------1.00----------------------------1.00---------------------
...............................................................................AAGTTGCTGTGAACACTTC........................................................................................................................................................191.000.00---------------------------------------------------1.00--------
................................................................................................................................................AAGCAGTGCCAGGGTGCGAG......................................................................................201.000.00-1.00----------------------------------------------------------
.........................................................CTCGAGATGGAATCTACTGGTGAAG........................................................................................................................................................................2511.001.00--------------------------------------------1.00---------------
................................................................................................................................................................................................................................ATCCCAGTACTTTAGGAGGCCGAGACCGG291.000.00-----1.00------------------------------------------------------
...................................................................................................................................................................................................CTGGCTGGGTGTGGTGGGGC...................................201.000.00-1.00----------------------------------------------------------
.................................................................................................................................................AGCAGTGCCAGGGTGTGAGAGAGTCGAC.............................................................................281.000.00-1.00----------------------------------------------------------
.............TGGATGAGGAGTTGCTTTAG.........................................................................................................................................................................................................................201.000.00----------------------------------------1.00-------------------
.......................................................................................................................................................................................................................ACACCTGCAATCCCAGTACTTTAGGAGGTCG....311.000.00-1.00----------------------------------------------------------
................................................................................................................................................AAGCAGTGCCAGGGTGTGAGAGAGTTGACCTC..........................................................................321.000.00-1.00----------------------------------------------------------
...................................GGATGAGCAAAGAAAGTGGTTAAA...............................................................................................................................................................................................2401.001.00-------1.00----------------------------------------------------
...........................................................................GGTGAAGTTGCTGTGTGA.............................................................................................................................................................181.000.00------------------------1.00-----------------------------------
.........................................................................................................................................................CAGGGTGTGAGAGAGTTGACTTCA.........................................................................2411.001.00-------------------------------1.00----------------------------
.................................................................................................................................................AGCAGTGCCAGGGTGTGAGAG....................................................................................2111.001.00-1.00----------------------------------------------------------
..........................................................................................................CAATAAAGGATTTAGGAATTACAGAAACCTGG................................................................................................................3211.001.00----------------------------------------------1.00-------------
...................................GGATGAGCAAAGAAAGTATA...................................................................................................................................................................................................201.000.00------------------------------1.00-----------------------------
...........................................................................................................AATAAAGGATTTAGGAATTACAGAAAC....................................................................................................................2711.001.00------------------------------------------------------1.00-----
...........................................................CGAGATGGAATCTACTGGTGAAGTTGCTGTGAACAT...........................................................................................................................................................3611.001.00-------------------1.00----------------------------------------
.......................................................................................................................................................................GTTGACTTCAATTTTGAAATAAGTTCCACTGGC..................................................3311.001.00--------------------1.00---------------------------------------
...................................GGATGAGCAAAGAAAGGAGA...................................................................................................................................................................................................201.000.00-----------------------------------1.00------------------------
.......................................................................................................................AGGAATTACAGAAACTGA.................................................................................................................181.000.00-------1.00----------------------------------------------------
..............................TTTAGGGATGAGCAAAGAAAGTA.....................................................................................................................................................................................................231.000.00------------------1.00-----------------------------------------
.......TTTGAATGGATGAGG....................................................................................................................................................................................................................................1501.001.00-----------------------------1.00------------------------------
...............................................................................................................................................AAAGCAGTGCCAGGGATTT........................................................................................191.000.00-------------------------------------------------1.00----------
...............................................................................................................AAGGATTTAGGAATTACAGAAACCTGGT...............................................................................................................2811.001.00--------------------------1.00---------------------------------
............ATGGATGAGGAGTTGCTTTTTAGGGA....................................................................................................................................................................................................................2611.001.00---1.00--------------------------------------------------------
.............................................................................................................................................ATAAAGCAGTGCCAGGGTGTGAGAGAGTCGAC.............................................................................321.000.00-1.00----------------------------------------------------------
............................................................................................................................................................................................................TGTGGTGGCTCACACCTGCACCC.......................231.000.00-1.00----------------------------------------------------------
...........................................................................................................AATAAAGGATTTAGGAATTA...........................................................................................................................2011.001.00--------------------------------------------------------1.00---
.......................................................................................................TGCCAATAAAGGATTTAGGAATTACAGAA......................................................................................................................2911.001.00---1.00--------------------------------------------------------
............ATGGATGAGGAGTTGCTTTAGGG.......................................................................................................................................................................................................................231.000.00-1.00----------------------------------------------------------
.............................................................................................................TAAAGGATTTAGGAATTACAGAAACC...................................................................................................................2611.001.00---1.00--------------------------------------------------------
......................................................................................................................TAGGAATTACAGAAACTGA.................................................................................................................191.000.00----1.00-------------------------------------------------------
....................................................................................................................................................................................................TGGCTGGGTGTGGTGGCTCACACCAT............................261.000.00-----1.00------------------------------------------------------
......................................................TTTCTCGAGATGGAATCTACTGGTT...........................................................................................................................................................................251.000.00---1.00--------------------------------------------------------
....................................................................................................................................................AGTGCCAGGGTGTGAGAGAGTTGACTTCG.........................................................................291.000.00-----1.00------------------------------------------------------
...............................................................................................................................................AAAGCAGTGCCAGGGTGTGAG......................................................................................2111.001.00-1.00----------------------------------------------------------
..................................................................................................................................................................................................ACTGGCTGGGTGTGGTGGGA....................................201.000.00---------1.00--------------------------------------------------
.............................................................................................................TAAAGGATTTAGGAATTACAGAAAC....................................................................................................................2511.001.00---1.00--------------------------------------------------------
.................................................................................................................................................AGCAGTGCCAGGGTGTGAGAGAGCTG...............................................................................261.000.00-1.00----------------------------------------------------------
..................................................................................................................................................................................................ACTGGCTGGGTGTGGTGGCTCACACCGC............................281.000.00-----1.00------------------------------------------------------
.....................................................................................................................................................GTGCCAGGGTGTGAGAGAGTTGACTTCCAT.......................................................................301.000.00---------------1.00--------------------------------------------
.....................................................................................................................................................GTGCCAGGGTGTGAGAGAGTTGAC.............................................................................2411.001.00-----------------------------------------1.00------------------
..................................................................................................................................................................................................ACTGGCTGGGTGTGGTGGGGGG..................................221.000.00-1.00----------------------------------------------------------
................................................................................................................................................AAGCAGTGCCAGGGTGTGAGAGAGTTGACC............................................................................301.000.00-1.00----------------------------------------------------------
...........AATGGATGAGGAGTTGC..............................................................................................................................................................................................................................1701.001.00--------------1.00---------------------------------------------
.....................................................................................................................................................GTGCCAGGGTGTGAGAGAGTTGACTTCAAT.......................................................................3011.001.00---------------1.00--------------------------------------------
..............................................................................................................................................................................................TTCCACTGGCTGGGTGTGTCTC......................................221.000.00-1.00----------------------------------------------------------
..............................................................................................................AAAGGATTTAGGAATTACAGAAAC....................................................................................................................2411.001.00---------------------------------------------1.00--------------
...........................................................................GGTGAAGTTGCTGTGTGG.............................................................................................................................................................181.000.00------------------------------------------1.00-----------------
...................................GGATGAGCAAAGAAAGTGGTT..................................................................................................................................................................................................2101.001.00------1.00-----------------------------------------------------
...............................................................................................................................................................................CAATTTTGAAATAAGTTCCACTGGCT.................................................2611.001.00---1.00--------------------------------------------------------
.........TGAATGGATGAGGAGTTGCTTTTTAGGGA....................................................................................................................................................................................................................2911.001.00---1.00--------------------------------------------------------
.....................................................................................................................................................................................TGAAATAAGTTCCACTGGCTGGG..............................................2311.001.00----------------------------------------------------1.00-------
...................................GGATGAGCAAAGAAAGTGGTTAA................................................................................................................................................................................................2301.001.00-----------------------1.00------------------------------------
..........................................................................................................CAATAAAGGATTTAGGAATTACAGAA......................................................................................................................2611.001.00-----------------------------------------------------1.00------
.....................................................................................................................TTAGGAATTACAGAAACTGA.................................................................................................................201.000.00------1.00-----------------------------------------------------
..TCAAATTTGAATGGATGAGGAGTTGC..............................................................................................................................................................................................................................2620.500.50---0.50--------------------------------------------------------
...CAAATTTGAATGGATGAGGAGTT................................................................................................................................................................................................................................2330.330.33----------------------------------------------------------0.33-
.................................................................................................................GGATTTAGGAATTACAGAAA.....................................................................................................................2030.330.33---------------------------------------------------------0.33--
...........................................AAAGAAAGTGGTTTCTCGA............................................................................................................................................................................................1950.200.20----------------0.20-------------------------------------------
.........................................................................................................................................................................................................................ACCTGCAATCCCAGTACTTTAG...........2260.170.17-----------------0.17------------------------------------------
.........TGAATGGATGAGGAGTTGCTTT...........................................................................................................................................................................................................................2280.120.12---------0.12--------------------------------------------------
................................TAGGGATGAGCAAAGAAAGTGGTT..................................................................................................................................................................................................2490.110.11------------------0.11-----------------------------------------
.................................AGGGATGAGCAAAGAAAGTGGTT..................................................................................................................................................................................................2390.110.11-----------------------------------------------------------0.11

Antisense strand
GATCAAATTTGAATGGATGAGGAGTTGCTTTTTAGGGATGAGCAAAGAAAGTGGTTTCTCGAGATGGAATCTACTGGTGAAGTTGCTGTGAACATTGTTAAAATGCCAATAAAGGATTTAGGAATTACAGAAACCTGGTTGATAAAGCAGTGCCAGGGTGTGAGAGAGTTGACTTCAATTTTGAAATAAGTTCCACTGGCTGGGTGTGGTGGCTCACACCTGCAATCCCAGTACTTTAGGAGGCCGAGAC
....................................................(((((((...(((.((((((..((((......((((....))..))......)))).....))))))....)))..)))))))...................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM532878(GSM532878)
G691T. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
....................................................................................................................................................................................................................CTCACACCTGCAATCCCAGAAA................ 223.000.00--------3.00---------------------------------------------------
.................................................................................................................................................................................................................TGGGATTGCAGGTGTGAGCCA.................... 2102.002.00---------------------1.00--------------1.00-----------------------
...................................................................................................................................................................................................................GCTCACACCTGCAATCCCAGAAAA............... 241.000.00----------1.00-------------------------------------------------
.................................................................................................................................................................................................................TGGCTCACACCTGCAATCCCAGTTCAC.............. 271.000.00-------------------------1.00----------------------------------
...............................................................................................TGTTAAAATGCCAATAGGC........................................................................................................................................ 191.000.00-----------------1.00------------------------------------------
............................................................................................................................................................................................AGTTCCACTGGCTGGGCTG........................................... 191.000.00------------------------------------------------1.00-----------
.............................................................................................................................................................................................................GTGGTGGCTCACACCTGCAATCCCACGGC................ 291.000.00-----1.00------------------------------------------------------
............................................................................................................................................................................................................................TGCAATCCCAGTACTTTAAAC......... 211.000.00------------1.00-----------------------------------------------
................................................................................................................................................................................................................................TCGGCCTCCTAAAGTACTGGGAT... 2301.001.00--------------1.00---------------------------------------------
................................................................................................................................................................................................................TGGGATTGCAGGTGTGAGCCAC.................... 2201.001.00---------------------------------------1.00--------------------
...........................................................................................................................................................................................................................CTGCAATCCCAGTACTTTAATA......... 221.000.00------------1.00-----------------------------------------------
...................................................................................................................................................CAGTGCCAGGGTGTGAGTCTG.................................................................................. 211.000.00-----1.00------------------------------------------------------
...................................................................................................................................................................................................................GCTCACACCTGCAATCCCAGAAAT............... 241.000.00----------1.00-------------------------------------------------
..................................................................................................................TCTGTAATTCCTAAATC....................................................................................................................... 1750.400.400.40-----------------------------------------------------------