ID: uc003bot.2_intron_6_0_chr3_383766_f.5p
GENE: (7)
chr3:383716-383965+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(5)
BRAIN 		(2)
BREAST 		(15)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(2)
OTHER 		(2)
RRP40.ip 		(3)
SKIN 		(4)
UTERUS

Sense strand
ATTAAGGACTATTGTACAGAAAATGCCAATGAAACTAACAGTTAACAGTTGTAAGTCCACATAATTTATCGTTTCATCATGTATGCTGAATGCAAATGTGTCTGTAATTTCCTTCTGGCTGAAGCCATTTAAAGCTGGGTTGATATTTTGCACCATTGTGCAGTTCAACTCTGGAGACTTCTTCCAGATGAAATAGACATCTGCAGCTGCAGATTCACGGTAGCTCTGTCTCTCACAGCCAGGAAATCAC
.............................................................................(((((.(((.....))).)))))..(((((..((..((..(((............)))..))..))....)))))..................................................................................................
..................................................51......................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR040043(GSM532928)
G428T. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)
..................................................................................................................................AAAGCTGGGTTGATATTTCTA...................................................................................................21211.001.007.004.00------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTCTAA..................................................................................................2225.001.003.002.00------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTCGA...................................................................................................2124.001.002.002.00------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGG......................................................................................................184.000.002.00-------1.00--------1.00--------------------------
..................................................................................................................................AAAGCTGGGTTGATATTG......................................................................................................1823.000.503.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGGGC.....................................................................................................1992.110.33------0.56--0.11--------------0.44--0.110.220.110.33------0.110.11-----
............................................................................................................................................................................................TGAAATAGACATCTGCAGCTGCAG......................................2412.002.00-----2.00--------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGTC.....................................................................................................192.000.001.00---------1.00---------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGC.....................................................................................................1922.000.50-2.00------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGTCG....................................................................................................202.000.00-1.00---------1.00--------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGCTA...................................................................................................2122.000.502.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGGG......................................................................................................1891.560.33------0.44---0.11-------------0.11--0.110.110.11-----0.110.11--0.11-0.11-0.11
..................................................................................................................................AAAGCTGGGTTGATAGG.......................................................................................................1791.440.33---0.67--0.11-------------------0.33-0.110.22--------------
..................................................................................................................................AAAGCTGGGTTGATATGGCG....................................................................................................201.000.00---------------------1.00----------------------
.................................................................................................................................TAAAGCTGGGTTGATATTTCGTA..................................................................................................231.000.001.00-------------------------------------------
........................................................................................................................................................................................................................................TCACAGCCAGGAAATTTTG191.000.00----1.00---------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTCGTA..................................................................................................2221.001.001.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGGAT....................................................................................................201.000.00-------1.00------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATATTGCGT...................................................................................................221.000.001.00-------------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATATTG......................................................................................................191.000.00-1.00------------------------------------------
...................................................................................................................................AAGCTGGGTTGATATTTCTA...................................................................................................201.000.001.00-------------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATATTTCTA...................................................................................................221.000.001.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGCG....................................................................................................2021.000.50---------1.00----------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTAT.....................................................................................................1921.000.50---------------1.00----------------------------
.................................................................................................................................TAAAGCTGGGTTGATTGTG......................................................................................................191.000.00--1.00-----------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGCT....................................................................................................2021.000.50-1.00------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGT......................................................................................................181.000.001.00-------------------------------------------
..............................................................................................AATGTGTCTGTAATTTCCTTCTGGCTGAAGC.............................................................................................................................3111.001.00---1.00----------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATGGAG....................................................................................................201.000.00--------------1.00-----------------------------
..................................................................................................................................AAAGCTGGGTTGATATTT......................................................................................................1821.001.001.00-------------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATATTGTGA...................................................................................................221.000.001.00-------------------------------------------
........................................................................................................................................................................................................................................TCACAGCCAGGAAATATTG191.000.00----1.00---------------------------------------
..................................................GTAAGTCCACATAATTTATCGTTTC...............................................................................................................................................................................2511.001.00------------------1.00-------------------------
..................................................................................................................................AAAGCTGGGTTGATATAAAA....................................................................................................201.000.00-1.00------------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATATGGCG....................................................................................................211.000.00--1.00-----------------------------------------
....................AAATGCCAATGAAACTAACA..................................................................................................................................................................................................................2011.001.00--1.00-----------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTCGAA..................................................................................................2221.001.001.00-------------------------------------------
...AAGGACTATTGTACAGAAAATGCC...............................................................................................................................................................................................................................2411.001.00------------1.00-------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTC.....................................................................................................1921.001.001.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTTCTGT..................................................................................................2221.001.001.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGGGC...................................................................................................2121.000.50-------------1.00------------------------------
..................................................................................................................................AAAGCTGGGTTGATATTGCGA...................................................................................................2121.000.501.00-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATATT.......................................................................................................1720.500.50---0.50----------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATAGGG......................................................................................................1930.330.33-------------------------------0.33------------
.................................................................................................................................TAAAGCTGGGTTGATA.........................................................................................................1630.330.33--------------------------0.33-----------------
.................................................................................................................................TAAAGCTGGGTTGATAGGCT.....................................................................................................2030.330.33-------------------------0.33------------------
.................................................................................................................................TAAAGCTGGGTTGATAGGGC.....................................................................................................2030.330.33---------------------------0.33----------------
.................................................................................................................................TAAAGCTGGGTTGATAGGAC.....................................................................................................2030.330.33-------0.33------------------------------------
.................................................................................................................................TAAAGCTGGGTTGATAGTG......................................................................................................1930.330.33--------0.33-----------------------------------
.................................................................................................................................TAAAGCTGGGTTGATAGG.......................................................................................................1830.330.33-------------------------0.33------------------
..................................................................................................................................AAAGCTGGGTTGATA.........................................................................................................1590.330.33---0.33----------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGGTC.....................................................................................................1990.330.33------0.11--------------------0.110.11---------------
..................................................................................................................................AAAGCTGGGTTGATAGAGC.....................................................................................................1990.220.33--------------------------------0.22-----------
..................................................................................................................................AAAGCTGGGTTGATAGTG......................................................................................................1890.220.33------0.22-------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGC.......................................................................................................1790.220.33--0.11---------------------------------------0.11-
..................................................................................................................................AAAGCTGGGTTGATAGTGC.....................................................................................................1990.110.33-0.11------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGTA......................................................................................................1890.110.330.11-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGTT......................................................................................................1890.110.33-0.11------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGGGA.....................................................................................................1990.110.33----------------------------------0.11---------
..................................................................................................................................AAAGCTGGGTTGATAGAG......................................................................................................1890.110.33------------------------0.11-------------------
..................................................................................................................................AAAGCTGGGTTGATAGGT......................................................................................................1890.110.33---------------------------------0.11----------
..................................................................................................................................AAAGCTGGGTTGATACGG......................................................................................................1890.110.33---------------------------------0.11----------
..................................................................................................................................AAAGCTGGGTTGATAGGA......................................................................................................1890.110.33-----------0.11--------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGGAA.....................................................................................................1990.110.330.11-------------------------------------------
..................................................................................................................................AAAGCTGGGTTGATAGA.......................................................................................................1790.110.33----------------------------------------0.11---

Antisense strand
ATTAAGGACTATTGTACAGAAAATGCCAATGAAACTAACAGTTAACAGTTGTAAGTCCACATAATTTATCGTTTCATCATGTATGCTGAATGCAAATGTGTCTGTAATTTCCTTCTGGCTGAAGCCATTTAAAGCTGGGTTGATATTTTGCACCATTGTGCAGTTCAACTCTGGAGACTTCTTCCAGATGAAATAGACATCTGCAGCTGCAGATTCACGGTAGCTCTGTCTCTCACAGCCAGGAAATCAC
.............................................................................(((((.(((.....))).)))))..(((((..((..((..(((............)))..))..))....)))))..................................................................................................
..................................................51......................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR040043(GSM532928)
G428T. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)
...............ACAGAAAATGCCAATGCTC........................................................................................................................................................................................................................ 191.000.00-------------------1.00------------------------
................................................................................................................................TTAAAGCTGGGTTGAG.......................................................................................................... 161.000.00--------------------1.00-----------------------
........................................................................................AATGCAAATGTGTCTAACG............................................................................................................................................... 191.000.00-----------------------1.00--------------------
..................................................................................................................................................................................................................................TGTCTCTCACAGCCATGC...... 181.000.00----------------1.00---------------------------