ID: uc003bms.2_intron_4_0_chr22_51018701_r
GENE: (6)
chr22:51018651-51018836-


(6)
B-CELL
(11)
BRAIN
(6)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(6)
LIVER
(1)
OTHER
(1)
RRP40.ip
(8)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
AGAGTCTACCCCATCGCCAGTCGTCTTCTGCCACAATGACATCCAGGAAGGTAGGAGAAGGCATCTGAGTCTCCTAACCCAAGATGGAAGAGCCAGAGGGCTCTGGAGTGAGCAGAACCTCACCCCATTCCCCCAGGGAACATCTTGCTGCTCTCAGAGCCAGAAAATGCTGACAGCCTCATGCTG
...................................................(((((((.((...))...))))))).....(((((..((((((....))))))((.(((((......))))).))..((((...)))).))))).........................................
..................................................51............................................................................................145.......................................
SizePerfect hitTotal NormPerfect NormSRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGGAGAAGGCATCTGAGTCT..................................................................................................................22121.0021.005.002.002.00------1.001.001.001.00---1.00--1.00---1.001.00--1.00----1.00-------------1.00-1.00-----------
..................................................GTAGGAGAAGGCATCTGAGT....................................................................................................................2016.006.00-------2.00-----1.001.00---------------1.00---------------------1.00-------
..................................................GTAGGAGAAGGCATCTGAAA....................................................................................................................2014.003.00---------------1.00---------------1.00------------1.00-----------1.00---
..................................................GTAGGAGAAGGCATCTGA......................................................................................................................1813.003.00--1.00------1.00----------------------------------------1.00---------
.......................................CATCCAGGAAGGTAGCAGC................................................................................................................................193.000.00------3.00-----------------------------------------------------
..................................................GTAGGAGAAGGCATCTGAA.....................................................................................................................1912.003.00--1.00-----------1.00---------------------------------------------
..................................................GTAGGAGAAGGCATCTGAGTCA..................................................................................................................2212.002.00---1.00-----------1.00--------------------------------------------
..................................................GTAGGAGAAGGCATCTGAGTCTC.................................................................................................................2312.002.00-------1.00-1.00--------------------------------------------------
..................................................GTAGGAGAAGGCATCTGAGTC...................................................................................................................2112.002.00------------1.00--------1.00--------------------------------------
................................ACAATGACATCCAGGAAG........................................................................................................................................1811.001.00---------------------------------1.00--------------------------
.......................................CATCCAGGAAGGTAGGAGAA...............................................................................................................................2011.001.00----------1.00-------------------------------------------------
.......................TCTTCTGCCACAATGACATCCAGG...........................................................................................................................................2411.001.00------------------------------------------------------1.00-----
..................................................GTAGGAGAAGGCATCTGAAAT...................................................................................................................2111.003.00-----------------1.00------------------------------------------
...........................................................................................................................................ACATCTTGCTGCTCTCAGAG...........................2011.001.00----------------------------------------1.00-------------------
...................................ATGACATCCAGGAAGGTAGGAGA................................................................................................................................2311.001.00-1.00----------------------------------------------------------
......................................................................................................................................AGGGAACATCTTGCTTGTC.................................191.000.00--------------------------------------1.00---------------------
.........................................................AAGGCATCTGAGTCTCCT...............................................................................................................1811.001.00---------------------------------------------------1.00--------
........................................................................................................................CACCCCATTCCCCCAGGGAAC.............................................2111.001.00-------------------------1.00----------------------------------
........................................ATCCAGGAAGGTAGGAGAAGGCATCTGAG.....................................................................................................................2911.001.00--------------------1.00---------------------------------------
....TCTACCCCATCGCCAGTCGTCTTCTGC...........................................................................................................................................................2711.001.00---------------------------------------------1.00--------------
...........................................CAGGAAGGTAGGAGAAGGC............................................................................................................................1911.001.00-----------------------------1.00------------------------------
..................................................GTAGGAGAAGGCATCTGAG.....................................................................................................................1911.001.00-------------1.00----------------------------------------------
..................................................GTAGGAGAAGGCATCTGAGGCTC.................................................................................................................2311.001.00-----------------------------------------------------1.00------
...........................................CAGGAAGGTAGGAGAAGGCATC.........................................................................................................................2211.001.00----------1.00-------------------------------------------------
....................................TGACATCCAGGAAGGTAGGAG.................................................................................................................................2111.001.00-----------------------------------------1.00------------------
.................................CAATGACATCCAGGAAGG.......................................................................................................................................1811.001.00-------------------------------------------------1.00----------
..................................................GTAGGAGAAGGCATCTGCAAT...................................................................................................................211.000.00-----------------1.00------------------------------------------
..............................................GAAGGTAGGAGAAGGCATCTGCGTC...................................................................................................................251.000.00---1.00--------------------------------------------------------
..........................................................AGGCATCTGAGTCTCCTA..............................................................................................................1811.001.00---------------------------------------1.00--------------------
.............................................................................................CAGAGGGCTCTGGAGTGAGCAGAAC....................................................................2511.001.00-----------------------------------------------1.00------------
..............................................................................................AGAGGGCTCTGGAGTCACA.........................................................................191.000.00-----1.00------------------------------------------------------
..................................................GTAGGAGAAGGCATCTGAGAAAA.................................................................................................................2311.001.00-------------------------------------------------------1.00----
.......................................CATCCAGGAAGGTAGC...................................................................................................................................161.000.00----------------------1.00-------------------------------------
..............................................................................................AGAGGGCTCTGGAGTCGCA.........................................................................191.000.00-----1.00------------------------------------------------------
..............................................................................................AGAGGGCTCTGGAGTAATA.........................................................................191.000.00-----1.00------------------------------------------------------
..................................................GTAGGAGAAGGCATCTGATTCT..................................................................................................................2211.003.00---1.00--------------------------------------------------------
.......................................CATCCAGGAAGGTAGGAGA................................................................................................................................1911.001.00-1.00----------------------------------------------------------
..........................................CCAGGAAGGTAGGAGAAGGC............................................................................................................................2011.001.00-------------------------------------------1.00----------------
...............................................................................................GAGGGCTCTGGAGTGAGCAGT......................................................................211.000.00------------------------------------------1.00-----------------
..................................................GTAGGAGAAGGCATCTGATT....................................................................................................................2011.003.00--------------------------1.00---------------------------------
..................................................GTAGGAGAAGGCATCTGAAAAA..................................................................................................................2211.003.00----------------1.00-------------------------------------------
.....................................GACATCCAGGAAGGTAGGAGAAGGCATC.........................................................................................................................2811.001.00----------------------------1.00-------------------------------
.........................................TCCAGGAAGGTAGGAGAAGGCA...........................................................................................................................2211.001.00-----------1.00------------------------------------------------
............................................AGGAAGGTAGGAGAAGGC............................................................................................................................1830.670.67-------------------0.330.33---------------------------------------
....................................................................................................CTCTGGAGTGAGCAGAAC....................................................................1820.500.50---------------------------------------------------------0.50--
..........................TCTGCCACAATGACAT................................................................................................................................................1680.120.12-----------------------------------------------------------0.12

Antisense strand
AGAGTCTACCCCATCGCCAGTCGTCTTCTGCCACAATGACATCCAGGAAGGTAGGAGAAGGCATCTGAGTCTCCTAACCCAAGATGGAAGAGCCAGAGGGCTCTGGAGTGAGCAGAACCTCACCCCATTCCCCCAGGGAACATCTTGCTGCTCTCAGAGCCAGAAAATGCTGACAGCCTCATGCTG
...................................................(((((((.((...))...))))))).....(((((..((((((....))))))((.(((((......))))).))..((((...)))).))))).........................................
..................................................51............................................................................................145.......................................
SizePerfect hitTotal NormPerfect NormSRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..........CCATCGCCAGTCGTCTCA.............................................................................................................................................................. 186.000.00----3.00---3.00---------------------------------------------------
..............................................................................................................AGCAGAACCTCACCCCTGT......................................................... 191.000.00------------------1.00-----------------------------------------
.............TCGCCAGTCGTCTTCAG............................................................................................................................................................ 171.000.00---1.00--------------------------------------------------------
........CCCCATCGCCAGTCGGG................................................................................................................................................................. 171.000.00-------------------------------------1.00----------------------
...............................................................................TCTGGCTCTTCCATCTTG......................................................................................... 1811.001.00------------------------------------1.00-----------------------
.......................................................................................................................TCACCCCATTCCCCCAACAC............................................... 201.000.00----------------------------------1.00-------------------------
............................................................................................................................CCATTCCCCCAGGGATGT............................................ 181.000.00-----------------------------------1.00------------------------
.........................TTCTGCCACAATGACCCG............................................................................................................................................... 181.000.00------------------1.00-----------------------------------------
...............CAGAAGACGACTGGC............................................................................................................................................................ 1530.330.33----------------------------------------------------------0.33-