ID: uc003bmk.7
GENE: CPT1B(11)
chr22:51010502-51010681-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(23)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(9)
HEART 		(3)
HELA 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
...............................................................................................................TCTCATCCTCTCCCTGCAGTT................................................21140.0040.0011.004.004.002.002.00-2.002.00-1.001.00---2.00---1.00----1.00-1.00-1.001.00------1.001.00------------------1.001.00---------
............................................................................AGGGCAGGCTGTAGGGGATGAGGC................................................................................24118.0018.002.001.003.002.00-1.00--2.002.00---------------------1.00-1.00---1.001.00------------1.00--------------
...............................................................................................................TCTCATCCTCTCCCTGCAGT.................................................20211.0011.00-1.501.000.50---1.50--0.500.501.50--2.00--0.50---------------------------------------0.50--0.50--0.50-
...............................................................................................................TCTCATCCTCTCCCTGCAGTTT...............................................22110.0010.002.00-3.001.001.00-1.00---1.00------------------------------1.00------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTAT...............................................2225.0011.003.500.500.500.50--------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCC...............................................................................2515.005.00-----2.00----------2.00--------------------------------1.00----------------
............................................................................AGGGCAGGCTGTAGGGGATGAGG.................................................................................2314.004.00-----1.00------------------1.00----1.00----------------1.00-------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCC...............................................................................2313.003.00-----------1.00--------------1.00---------------------1.00-----------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGC................................................................................2312.002.00-----------1.00-------------------------------1.00----------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGA.................................................................................2312.002.00-1.00-1.00--------------------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAG..................................................................................2112.002.00------1.00---1.00-------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGC................................................................................2212.002.00-1.00---------1.00------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAT..............................................2312.0040.00-1.00--1.00-------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGG.................................................................................2112.002.00-----1.00-------1.00----------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAG..................................................................................2212.002.00--------1.00-----------------------------------------1.00---------------
.........................................................................TGCAGGGCAGGCTGTAGGGGATGA...................................................................................2411.001.00-------------1.00----------------------------------------------------
................................................................................CAGGCTGTAGGGGATGAGACTC..............................................................................221.000.00---------------------1.00--------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTA................................................2121.0011.00-0.50----0.50-----------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGATT..............................................................................2611.004.00------------------------------------------------------1.00-----------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAA..............................................2311.0040.00-1.00----------------------------------------------------------------
...............................................................................GCAGGCTGTAGGGGATGAGGCCAGCC...........................................................................2611.001.00-------------------1.00----------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCT...............................................................................2511.0018.00-1.00----------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGAAT...............................................................................2511.002.00---------------------------------------------------------1.00--------
............................................................................AGGGCAGGCTGTAGGGGATAA...................................................................................211.000.00--------------------------------------------1.00---------------------
.................................TTGGGCACCTCTGGGAG..................................................................................................................................1711.001.00--------------------------------1.00---------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGA.................................................................................211.000.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAA..............................................................................2411.002.00-----1.00------------------------------------------------------------
......................................................................................GTAGGGGATGAGGCCAGCCTCAA.......................................................................231.000.00-----------------1.00------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAG..................................................1921.001.00------------0.50-----------------------------------------------0.50-----
............................................................................AGGGCAGGCTGTAGGGGATGAGGA................................................................................2411.004.00----1.00-------------------------------------------------------------
.....................................................................AACCTGCAGGGCAGGCTGTAGGGGATGAA..................................................................................291.000.00-------------1.00----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCCGTT................................................211.000.00-----------------1.00------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAAA.................................................................................221.000.00---------1.00--------------------------------------------------------
..........................................................CTTGCAGAGGGAACCTGAA.......................................................................................................191.000.00----------------------------------1.00-------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCA...............................................................................2511.0018.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAAT.............................................................................2511.002.00-------1.00----------------------------------------------------------
.................................................................................................................TCATCCTCTCCCTGCAGTT................................................1911.001.00--1.00---------------------------------------------------------------
.................................................................................................................................GTTTGTCCTGGGCACAGACAGC.............................2211.001.00-----------------------------------------------1.00------------------
...............................................................................GCAGGCTGTAGGGGATGAGGC................................................................................2111.001.00-----------------------------------------------------1.00------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCTAT.............................................................................2511.002.00------------------------------------------1.00-----------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCC...............................................................................2411.001.00------------------------------1.00-----------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCA...............................................................................2311.002.00----------------------1.00-------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCCA..............................................................................2511.001.00--------1.00---------------------------------------------------------
....AGAGCATGCGTGGGC.................................................................................................................................................................1520.500.50------------0.50-----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCATTT................................................2120.500.50--0.50---------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAAA.................................................2020.500.50------------0.50-----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGAT................................................2120.501.00---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGCT................................................2120.501.00-----------------------------------------------------------0.50------
...............................................................................................................TCTCATCCTCTCCCTGCAGTAA...............................................2220.5011.00-----------------------------------------------------------------0.50
...............................................................................................................TCTCATCCTCTCCCTGCA...................................................1820.500.50---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGGTA...............................................2220.501.00-0.50----------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTGAA..............................................2320.5011.00--------------------------------------------------------------0.50---
...............................................................................................................TCTCATCCTCTCCCTGCAGAATT..............................................2320.501.00---------------------------------------------------------------0.50--

Antisense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
..............................................................CAGAGGGAACCTGCAGTAT................................................................................................... 192.000.00----------------------------------------1.00----1.00--------------------
...............................................................................................................................................CCAGGTGGAAGCTGTCTG................... 1811.001.00--------------------1.00---------------------------------------------
..................................................................................................ATGAGACTGAGAGGCTGGC............................................................... 1911.001.00----1.00-------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCC................................................... 181.000.00----------------------------------------------------1.00-------------
..........................................................................................GGGATGAGGCCAGCCTCTGGCT.................................................................... 221.000.00---------------------------------------1.00--------------------------
..................................................................................CTCATCCCCTACAGCC.................................................................................. 1650.200.20---0.20--------------------------------------------------------------