ID: uc003bku.1_intron_15_0_chr22_50719929_r
GENE: PLXNB2(3)
chr22:50719879-50720044-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(15)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(4)
HELA 		(5)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCAAGCGGCGGCAGAAACGAGACACCACACACAACCTGCCCGAGTTCATTGTGCGTGAGCGGGGACTGGCGGGGGGTGCCCCCACGGGACCGCGCTGAACCCGGCCCCCCACACAGGTGAAGTTCGGCTCTCGCGAGTGGGTGCTGGGCCGCGTGGAGTACGACAC
....................................................((....)).((..(((..(((((...))))).)))..))..((((....)))).............................................................
..................................................51.....................................................106..........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTGCGTGAGCGGGGACTGT.................................................................................................19113.003.002.007.00------------2.00--1.00-----------------------1.00----------------------
...................................................TGCGTGAGCGGGGACTGT.................................................................................................184.000.003.00--------------1.00------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGA.................................................................................................1914.003.001.00--------------------------------1.00----1.00-----------------1.00-------
...................................................TGCGTGAGCGGGGACTGTAA...............................................................................................204.000.00--3.00------------1.00------------------------------------------------
..................................................GTGCGTGAGCGGGGACT...................................................................................................1713.003.002.001.00--------------------------------------------------------------
..................................................GTGCGTGAGCGGGGACTG..................................................................................................1813.003.00-----------------------1.00-------------1.00---------------1.00----------
..................................................GTGCGTGAGCGGGGACTGGCGGGGGGTGCCCCCACGGGACCGCGCTGAACCCGGC.............................................................5513.003.00--------3.00-------------------------------------------------------
.CAAGCGGCGGCAGAAACGA..................................................................................................................................................1912.002.00----2.00-----------------------------------------------------------
...................................................TGCGTGAGCGGGGACTGTTT...............................................................................................202.000.001.00---------------------------------------------1.00-----------------
..................................................GTGCGTGAGCGGGGACTGGAA...............................................................................................212.000.001.00--------------------------------------------1.00------------------
........................................................GAGCGGGGACTGGCGGGGG...........................................................................................1912.002.00-----2.00----------------------------------------------------------
..........................................................................................................................................GGGTGCTGGGCCGCGTGGAGTA......2212.002.00----------------2.00-----------------------------------------------
...................................................................................ACGGGACCGCGCTGAAC..................................................................1712.002.00------1.00---------------------------------------------------1.00-----
...............AACGAGACACCACACACAA....................................................................................................................................1912.002.00---2.00------------------------------------------------------------
................ACGAGACACCACACACAACCTGCC..............................................................................................................................2412.002.00-------------2.00--------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGTAA...............................................................................................2111.003.00---------1.00------------------------------------------------------
...................................................TGCGTGAGCGGGGACTGTAAA..............................................................................................211.000.00--1.00-------------------------------------------------------------
........................................................GAGCGGGGACTGGCGGGGT...........................................................................................191.000.00-----1.00----------------------------------------------------------
................................................TTGTGCGTGAGCGGGGGAAG..................................................................................................201.000.00----------1.00-----------------------------------------------------
..........................................................................................................................TTCGGCTCTCGCGAGTGGG.........................1911.001.00------------------------------------------------------1.00---------
...................................................TGCGTGAGCGGGGACTGGCGGAA............................................................................................231.000.00--------------------------------1.00-------------------------------
.........................................................AGCGGGGACTGGCGGAATC..........................................................................................191.000.00---------------------------1.00------------------------------------
...................................................TGCGTGAGCGGGGACTGTAG...............................................................................................201.000.00--1.00-------------------------------------------------------------
.....................................................................................GGGACCGCGCTGAACAC................................................................171.000.00------1.00---------------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGTA................................................................................................2011.003.00---------------------1.00------------------------------------------
...................................................TGCGTGAGCGGGGACTGGCGGGGGGTGCCCCCACGGGACCGCGCTGAAC..................................................................4911.001.00-------------------------------------------------1.00--------------
................................AACCTGCCCGAGTTCATTGTGA................................................................................................................221.000.00-------1.00--------------------------------------------------------
..........................................AGTTCATTGTGCGTG.............................................................................................................1511.001.00------------------------------------------------1.00---------------
...............................................................................................TGAACCCGGCCCCCCACACA...................................................2011.001.00-------------------------------1.00--------------------------------
.CAAGCGGCGGCAGAATTCA..................................................................................................................................................191.000.00------------1.00---------------------------------------------------
....................................................GCGTGAGCGGGGACTGGCGT..............................................................................................201.000.00--------------------------1.00-------------------------------------
...................................................TGCGTGAGCGGGGACTTAAG...............................................................................................201.000.00-1.00--------------------------------------------------------------
......GGCGGCAGAAACGAGACACCACAAAAA.....................................................................................................................................271.000.00-------1.00--------------------------------------------------------
................................AACCTGCCCGAGTTCACT....................................................................................................................181.000.00-----------1.00----------------------------------------------------
...............AACGAGACACCACACACA.....................................................................................................................................1811.001.00----------------------------------------1.00-----------------------
..........GCAGAAACGAGACACCA...........................................................................................................................................1711.001.00------------1.00---------------------------------------------------
...................................................TGCGTGAGCGGGGACTGAAG...............................................................................................201.000.00---------1.00------------------------------------------------------
.......................................................TGAGCGGGGACTGGCGA..............................................................................................171.000.00-----------------------------------------------1.00----------------
......................................................................................................................GAAGTTCGGCTCTCGCGAGT............................2011.001.00-------------------------1.00--------------------------------------
...............................................................................................TGAACCCGGCCCCCCACACAGT.................................................2211.001.00-----------------------------------1.00----------------------------
................ACGAGACACCACACACAACCTGCCCGAGT.........................................................................................................................2911.001.00---------------------------------------------------------1.00------
.......................................................................................................................................AGTGGGTGCTGGGCCGCGCGG..........211.000.00--------------------------------------------1.00-------------------
..................................................GTGCGTGAGCGGGGACTGGCG...............................................................................................2111.001.00-------------------------------------------------------------1.00--
..AAGCGGCGGCAGAAACTTT.................................................................................................................................................191.000.00------------------------------------------------------------1.00---
...................................................TGCGTGAGCGGGGACTGGAA...............................................................................................201.000.001.00---------------------------------------------------------------
...................................................TGCGTGAGCGGGGACTGGTAT..............................................................................................211.000.001.00---------------------------------------------------------------
.....................................................................................................................TGAAGTTCGGCTCTCGCGAGTGGGTGCTGGG..................3111.001.00----------------------------------------------------1.00-----------
.CAAGCGGCGGCAGAAAAGA..................................................................................................................................................191.000.00----1.00-----------------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGAA................................................................................................2011.003.00-----------------1.00----------------------------------------------
...................................CTGCCCGAGTTCATTGTGCGTGA............................................................................................................2311.001.00----------------------------1.00-----------------------------------
......................................................GTGAGCGGGGACTGGCGGGG............................................................................................2011.001.00------------------------------------------1.00---------------------
...................................................TGCGTGAGCGGGGACTGGT................................................................................................191.000.001.00---------------------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGAAA...............................................................................................2111.003.00-------------------------------------------1.00--------------------
.CAAGCGGCGGCAGAAACGAGACACA............................................................................................................................................251.000.00----1.00-----------------------------------------------------------
..................................................GTGCGTGAGCGGGGACTGGCGA..............................................................................................2211.001.001.00---------------------------------------------------------------
........CGGCAGAAACGAGACACCACA.........................................................................................................................................2111.001.00-----------------------------1.00----------------------------------
............................................................GGGGACTGGCGGGGGGGG........................................................................................181.000.00--------------------------------------------------1.00-------------
.............GAAACGAGACACCACACACA.....................................................................................................................................2011.001.00---1.00------------------------------------------------------------
.....................................................................................GGGACCGCGCTGAACCCGGC.............................................................2011.001.00-------------------1.00--------------------------------------------
..................................................GTGCGTGAGCGGGGACTGGTAA..............................................................................................221.000.001.00---------------------------------------------------------------
..AAGCGGCGGCAGAAACGA..................................................................................................................................................1811.001.00---1.00------------------------------------------------------------
.CAAGCGGCGGCAGAAACGAGAC...............................................................................................................................................2211.001.00--------------------1.00-------------------------------------------
..AAGCGGCGGCAGAAACGATA................................................................................................................................................2011.001.00-----------1.00----------------------------------------------------
..............AAACGAGACACCACACACAACCTGCCCGAG..........................................................................................................................3011.001.00---------------------------------------------------1.00------------
...............................................................................................TGAACCCGGCCCCCCAC......................................................1711.001.00------------------------1.00---------------------------------------
....................................................................................CGGGACCGCGCTGAAC..................................................................1611.001.00-------------------------------------------------------1.00--------
...................................................TGCGTGAGCGGGGACTGGAAA..............................................................................................211.000.00--1.00-------------------------------------------------------------
...............................................................................................TGAACCCGGCCCCCCACACAG..................................................2111.001.00------------------------------------1.00---------------------------
................................................................................................................................TCTCGCGAGTGGGTGCTGGG..................2011.001.00-----------------------------------------------------------1.00----
................ACGAGACACCACACACAACCT.................................................................................................................................2111.001.00-------1.00--------------------------------------------------------
...................................................TGCGTGAGCGGGGACTGTTAA..............................................................................................211.000.001.00---------------------------------------------------------------
...........CAGAAACGAGACACCACACAGA.....................................................................................................................................221.000.00---1.00------------------------------------------------------------
...................................CTGCCCGAGTTCATT....................................................................................................................1530.330.33--------------------------------------------------------------0.33-

Antisense strand
CCAAGCGGCGGCAGAAACGAGACACCACACACAACCTGCCCGAGTTCATTGTGCGTGAGCGGGGACTGGCGGGGGGTGCCCCCACGGGACCGCGCTGAACCCGGCCCCCCACACAGGTGAAGTTCGGCTCTCGCGAGTGGGTGCTGGGCCGCGTGGAGTACGACAC
....................................................((....)).((..(((..(((((...))))).)))..))..((((....)))).............................................................
..................................................51.....................................................106..........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................GGCGGGGGGTGCCCCCCCCG............................................................................... 203.000.00------1.00-----------2.00---------------------------------------------
.............................................................................................GCTGAACCCGGCCCCCCAAG..................................................... 201.000.00----------1.00-----------------------------------------------------
...................AGACACCACACACAAGGTT................................................................................................................................ 191.000.00----------------------------------1.00-----------------------------
...............................................................................................TGAACCCGGCCCCCCAACAG................................................... 201.000.00---------------------------------------1.00------------------------
.......................................................................................................................................CGGCCCAGCACCCACT............... 1630.330.33---------------------------------------------------------------0.33
...........................CGGGCAGGTTGTGTG............................................................................................................................ 1540.250.25---------0.25------------------------------------------------------