ID: uc003bkl.1_intron_9_0_chr22_50699726_r
GENE: MAPK12(1)
chr22:50699676-50699863-


(3)
AGO2.ip 		(1)
B-CELL 		(5)
BREAST 		(19)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
XRN.ip

Sense strand
GTGTACCGGGACCTGCAGCCCGTGGGCTCGGGCGCCTACGGCGCGGTGTGGTGAGCGCGGGCCGGGCGGGGCGGCCGGCGGGGCGGGCGGGGCCTGCGCGGGGTGCCCGGCCTTCCCGCTAAGCGGTCCGCCCCGCAGCTCGGCCGTGGACGGCCGCACCGGCGCTAAGGTGGCCATCAAGAAGCTGT
........................................................................(((((((((((.((.((((((((.....)))).)))).)).))))))....)))))............................................................
......................................................................71........................................................129.........................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)
.........................................................................................................CCCGGCCTTCCCGCTAGGGC...............................................................2011.000.001.00----1.001.00-2.001.00--------1.001.00-------------------1.00----------1.001.00-------
..........................................................................................................CCGGCCTTCCCGCTAGGGC...............................................................198.000.003.00---1.00-1.00--1.00------1.00----------------1.00-------------------------
.................................................................................................................................................GTGGACGGCCGCACCGGC.........................1814.004.00--4.00--------------------------------------------------------
.........................................................................................................CCCGGCCTTCCCGCTAGGG................................................................193.000.00----------1.00---------1.00------1.00-------------------------------
.........................................................................................................CCCGGCCTTCCCGCTAGG.................................................................183.000.00----1.00--1.00---------------------------1.00-----------------------
...........................................................................CGGCGGGGCGGGCGGGGCC..............................................................................................1912.002.00-----------1.00-----------------------------------1.00-----------
..........................................................................................................CCGGCCTTCCCGCTAGG.................................................................172.000.00--------------1.00-----------------------1.00--------------------
.....................................................................GGCGGCCGGCGGGGCGGGG....................................................................................................1912.002.00---1.00--------------------------------1.00----------------------
.....................................................................GGCGGCCGGCGGGGCGGGGC...................................................................................................2012.002.00------------2.00----------------------------------------------
.........................................................................................................CCCGGCCTTCCCGCTAG..................................................................172.000.00----1.00----------------------------------------1.00-------------
.....................................................................GGCGGCCGGCGGGGCGGG.....................................................................................................1812.002.00---1.00--------------------------------------------1.00----------
..........................................................................................................CCGGCCTTCCCGCTAGGG................................................................182.000.00--------------------------------1.00-------------1.00------------
.....................................................................GGCGGCCGGCGGGGCGGGGGG..................................................................................................2111.002.00----------------------------------------------------1.00------
...................................................................GGGGCGGCCGGCGGGAGCC......................................................................................................191.000.00-------------------------------------1.00---------------------
..........................................................................................................CCGGCCTTCCCGCTAGGTC...............................................................191.000.001.00----------------------------------------------------------
.......................................................................................................................................CAGCTCGGCCGTGGACGGG..................................1911.001.00--1.00--------------------------------------------------------
..................................CCTACGGCGCGGTGTG..........................................................................................................................................1611.001.00----------------------------------------1.00------------------
................................................................................................................................................CGTGGACGGCCGCACCGGCGCTAAGGTGGC..............3011.001.001.00----------------------------------------------------------
...................................................................................................................................CCCGCAGCTCGGCCGTGGAC.....................................2011.001.00-------1.00---------------------------------------------------
.....................................................................GGCGGCCGGCGGGGCGA......................................................................................................171.000.00---1.00-------------------------------------------------------
..................................................................................................................................CCCCGCAGCTCGGCCGTGGACGG...................................2311.001.00-------------------------------------------------1.00---------
...........................................................................CGGCGGGGCGGGCGGGGCGGA............................................................................................211.000.00-----------1.00-----------------------------------------------
...................................................TGAGCGCGGGCCGGGCACA......................................................................................................................191.000.00-------------------------------1.00---------------------------
................................................................................GGGCGGGCGGGGCCTGT...........................................................................................171.000.00--------------------------1.00--------------------------------
..........................................................................................................................................CTCGGCCGTGGACGGC..................................1611.001.00---------------1.00-------------------------------------------
.........................................................CGGGCCGGGCGGGGC....................................................................................................................1501.001.00-----------------------1.00-----------------------------------
...............................................................GGGCGGGGCGGCCGGCGCGC.........................................................................................................201.000.00-1.00---------------------------------------------------------
.........................................................................................................CCCGGCCTTCCCGCTAGGGT...............................................................201.000.00-------------------------------------------1.00---------------
.......................................................................................................................................CAGCTCGGCCGTGGACGG...................................1811.001.00--------------------------------------------1.00--------------
.....................GTGGGCTCGGGCGCCTACGGCGC................................................................................................................................................2311.001.001.00----------------------------------------------------------
................................................................................GGGCGGGCGGGGCCTGCG..........................................................................................1820.500.50-------------------------------------------------------0.50---
.......................................................CGCGGGCCGGGCGGGGCGG..................................................................................................................1920.500.50--------------0.50--------------------------------------------
..................................................................CGGGGCGGCCGGCGGGG.........................................................................................................1740.250.25---0.25-------------------------------------------------------
......................................................................GCGGCCGGCGGGGCGGG.....................................................................................................1790.220.22---------------------------------------------------------0.110.11
.........................................................................................................CCCGGCCTTCCCGCT....................................................................1560.170.170.17----------------------------------------------------------

Antisense strand
GTGTACCGGGACCTGCAGCCCGTGGGCTCGGGCGCCTACGGCGCGGTGTGGTGAGCGCGGGCCGGGCGGGGCGGCCGGCGGGGCGGGCGGGGCCTGCGCGGGGTGCCCGGCCTTCCCGCTAAGCGGTCCGCCCCGCAGCTCGGCCGTGGACGGCCGCACCGGCGCTAAGGTGGCCATCAAGAAGCTGT
........................................................................(((((((((((.((.((((((((.....)))).)))).)).))))))....)))))............................................................
......................................................................71........................................................129.........................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)
................................................................GGCGGGGCGGCCGGCGGCG......................................................................................................... 194.000.00-2.00-----------2.00---------------------------------------------
............................................................GCCGGGCGGGGCGGCGGCG............................................................................................................. 193.000.00-3.00---------------------------------------------------------
..........................................................................CCGGCGGGGCGGGCGGGGG............................................................................................... 192.000.00-----1.00-----------------------------------------------1.00-----
.....ACGGGCTGCAGGTCCCGG..................................................................................................................................................................... 1812.002.00------------------------------1.00---1.00------------------------
............CCCGAGCCCACGGGCTGCAG............................................................................................................................................................ 2011.001.00-----------------------------1.00-----------------------------
................................................................GGCGGGGCGGCCGGCGGTG......................................................................................................... 191.000.00-1.00---------------------------------------------------------
..............................................................................................................................................................TGGCCACCTTAGCGCCGG............ 1811.001.00----------------------------1.00------------------------------
..GTACCGGGACCTGCAGCCCGTGGGCC................................................................................................................................................................ 261.000.00----------------------1.00------------------------------------
..............................................................................................................................................................ATGGCCACCTTAGCGCCGG........... 1911.001.00-------------------------1.00---------------------------------
......GAGCCCACGGGCTGCAGGTCCCG............................................................................................................................................................... 2311.001.00------------------------1.00----------------------------------
.........................................................................GCCGGCGGGGCGGGCGACG................................................................................................ 191.000.00------------------------------------------------------1.00----
.......................................................................................................CCGCTTAGCGGGAAGGCCGGGCA.............................................................. 2311.001.00---------------------1.00-------------------------------------
...............................................................................GGGGCGGGCGGGGCCAT............................................................................................ 171.000.00-----------------1.00-----------------------------------------
...........................................CGCGCTCACCACACCG................................................................................................................................. 1611.001.00-----------------------------------------1.00-----------------
...................................................................GGGGCGGCCGGCGGGGCGG...................................................................................................... 191.000.00----------1.00------------------------------------------------
............................................................................................................................GCCGAGCTGCGGGGCGGACC............................................ 2011.001.00------------------------------------------1.00----------------
.........GCCCACGGGCTGCAGGTC................................................................................................................................................................. 1820.500.50--0.50--------------------------------------------------------
...........................................................GGCCGCCCCGCCCGGCC................................................................................................................ 1740.250.25--------------------------------------------------------0.25--