ID: uc003bie.2_intron_0_0_chr22_47158746_f.5p
GENE: (1)
chr22:47158696-47158945+


(8)
B-CELL
(5)
BRAIN
(6)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(4)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(18)
SKIN
(1)
TESTES
(1)
UTERUS
(2)
XRN.ip

Sense strand
GGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGCAAGCTCCCGGGCAGGTGGGTGTGCCGCGGAGGGCCAGGTCGGGGTCAGGGGTCAGAGGTCAGGTGGCCGCGTTGGCCTCCTGGGCTGCGGGTGGAGTCGGGGGTCTGGAGAGGGCAACTTGGACTCTGAGGAGACTGCTGGATGGTGTGACGGGCGTTGGGGGGCTCGGAGGTCGGAGCGTGGGGTCTGGGGGTGACAGTGGCTGCACGTAGGA
........................................................................................................................................((((((....(((....)))))))))..((....)).((.((((..........)))).)).....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189785SRR343337SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR343336SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR343335SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................TGGAGAGGGCAACTTTGG...........................................................................................1816.000.00-2.00-9.00-----3.00-------1.00-----------------------1.00-----------------------------
.......................................................................................................................................................AACTTGGACTCTGAGGAGAC...............................................................................20113.0013.0013.00----------------------------------------------------------------------
..........................................................................................................................................................TTGGACTCTGAGGAGACTGC............................................................................2016.006.006.00----------------------------------------------------------------------
............................................................................................................................................................................GCTGGATGGTGTGACGGG............................................................1812.002.00-----1.00-----1.00-----------------------------------------------------------
.............................................................................................................................................................................................GCGTTGGGGGGCTCGTGG...........................................182.000.00--------------------1.00-------------------------1.00------------------------
...................................................................................................................................................................GAGGAGACTGCTGGATGGTG...................................................................2012.002.00--------2.00--------------------------------------------------------------
....................................................................................................................................................GGCAACTTGGACTCTGAGGAGAC...............................................................................2312.002.00--------2.00--------------------------------------------------------------
..............ATTCTGGAAGCGCAGCAACAGCAAGCT.................................................................................................................................................................................................................2711.001.00------------------------------------------------------1.00----------------
....................................AAGCTCCCGGGCAGGTGGGTG.................................................................................................................................................................................................2111.001.00----------------------1.00------------------------------------------------
............................................................CGCGGAGGGCCAGGTTGG............................................................................................................................................................................181.000.00-------------------------------------------------------1.00---------------
......................................................................................................................................................................GAGACTGCTGGATGGTGTGA................................................................2011.001.00--------------------------1.00--------------------------------------------
........................................................................................................................................GGGTCTGGAGAGGGCAACTTGGACT.........................................................................................2511.001.00---------------1.00-------------------------------------------------------
..............................................................................................................................................................ACTCTGAGGAGACTGCC...........................................................................171.000.00---------------------------------------1.00-------------------------------
..........................................................................................................................................................................................CGGGCGTTGGGGGGCTCGGAGGTCGGGGG...................................291.000.00----------------------------1.00------------------------------------------
.................CTGGAAGCGCAGCAACAGC......................................................................................................................................................................................................................1911.001.00------------------------------1.00----------------------------------------
................................................................................................................................................AGAGGGCAACTTGGATG.........................................................................................171.000.00-------------------------------1.00---------------------------------------
..........................................................................................................................................................................CTGCTGGATGGTGTGACGGG............................................................2011.001.00-----1.00-----------------------------------------------------------------
.......................................................................................................................................................AACTTGGACTCTGAGGAGACTGCT...........................................................................2411.001.00---------------------------------------------------1.00-------------------
.................CTGGAAGCGCAGCAACA........................................................................................................................................................................................................................1711.001.00-----------------------------------------------------1.00-----------------
.............................................................................................................................................................GACTCTGAGGAGACTGCTGGATG......................................................................2311.001.00------------------------------------1.00----------------------------------
......................................................................................................................................GGGGGTCTGGAGAGGGCAA.................................................................................................1911.001.00-------------------------1.00---------------------------------------------
.......................................................................................................................................................AACTTGGACTCTGAGGAG.................................................................................1811.001.00---------------------------------------------------------1.00-------------
......................................................................................................................................................CAACTTGGACTCTGAGGAGAC...............................................................................2111.001.00-----1.00-----------------------------------------------------------------
.............................................................................................................................................TGGAGAGGGCAACTTGGACTCTGAGGAGACTGCTG..........................................................................3511.001.00------------------------------------------------------------1.00----------
...........................................................................................................................................................TGGACTCTGAGGAGACTGCT...........................................................................2011.001.00---------------------1.00-------------------------------------------------
.....CAGGAAGCAATTCTGGAAGCGC...............................................................................................................................................................................................................................2211.001.00-----------------------------------1.00-----------------------------------
....................................................................................................................................................................AGGAGACTGCTGGATGGTGTGACGGGCGC.........................................................291.000.00--------------------------------------1.00--------------------------------
....................................................................................................................................................................AGGAGACTGCTGGATGGTGTG.................................................................2111.001.00----------------1.00------------------------------------------------------
.......................................................................................................................................................................AGACTGCTGGATGGTGAAAA...............................................................201.000.00--------------------------------1.00--------------------------------------
..................TGGAAGCGCAGCAACAGCAAGCTCCCGGGCAG........................................................................................................................................................................................................3211.001.00------------1.00----------------------------------------------------------
............................................................................................................................................................................GCTGGATGGTGTGACGGAAG..........................................................201.000.00--------------------------------------------------1.00--------------------
.................CTGGAAGCGCAGCAACAGCAAGCTCCCGGGC..........................................................................................................................................................................................................3111.001.00------------1.00----------------------------------------------------------
..........................................................................TCGGGGTCAGGGGTCAGAGGTCAGGTG.....................................................................................................................................................2711.001.00--------------------------------------------------------1.00--------------
.............AATTCTGGAAGCGCAGCA...........................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------1.00-----------
...................................................................................................................CTGGGCTGCGGGTGGAGTCGGGGA...............................................................................................................241.000.00-----1.00-----------------------------------------------------------------
.................................................................................................................................GAGTCGGGGGTCTGGAGAG......................................................................................................1911.001.00-----1.00-----------------------------------------------------------------
.......GGAAGCAATTCTGGAAGCGCAGCAACA........................................................................................................................................................................................................................2711.001.00--------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................CGGAGCGTGGGGTCTGGGGGTG...................2211.001.00-----------------------------------------------1.00-----------------------
...........................................................................................................................................................TGGACTCTGAGGAGACTGCTGGATGGT....................................................................2711.001.00--------------------------------------------1.00--------------------------
....................................................................................................................................................GGCAACTTGGACTCTGAGGA..................................................................................2011.001.00-----1.00-----------------------------------------------------------------
.........................................................................................................................TGCGGGTGGAGTCGGGGGTGTTT..........................................................................................................231.000.00-----------------------1.00-----------------------------------------------
.............................................................................................................................................TGGAGAGGGCAACTTTGGG..........................................................................................191.000.00-----------1.00-----------------------------------------------------------
...............TTCTGGAAGCGCAGCAACAGC......................................................................................................................................................................................................................2111.001.00-------------------------------------------1.00---------------------------
..............ATTCTGGAAGCGCAGCAAC.........................................................................................................................................................................................................................1911.001.00-------------------------------------1.00---------------------------------
.................................................................................................................................................GAGGGCAACTTGGACTCTGAGG...................................................................................2211.001.00-----1.00-----------------------------------------------------------------
.......................................................................................................................GCTGCGGGTGGAGTCGGGGG...............................................................................................................2011.001.00-----1.00-----------------------------------------------------------------
.......................................................................................................................................................AACTTGGACTCTGAGGAGACT..............................................................................2111.001.00----------------------------------------------------1.00------------------
.............................................................................................................................GGTGGAGTCGGGGGTTCA...........................................................................................................181.000.00---------------------------------------------1.00-------------------------
................................................................................................................CTCCTGGGCTGCGGGTG.........................................................................................................................1720.500.50---------------------------------------------------------------0.50-------
.......................................................................................................................................................................AGACTGCTGGATGGTGTG.................................................................1820.500.50---------------0.50-------------------------------------------------------
..............ATTCTGGAAGCGCAG.............................................................................................................................................................................................................................1520.500.50-----------------------------------------------------------------0.50-----
...............................................................................................................................TGGAGTCGGGGGTCT............................................................................................................1560.330.33----------------0.17---------------------------------------------------0.17--
..............................................................................................................GCCTCCTGGGCTGCGGG...........................................................................................................................1730.330.33-------------------------------------------------------------------0.33---
...............................................................................................................CCTCCTGGGCTGCGG............................................................................................................................1560.170.17---------------------------------------------------------------------0.17-
.......................................................................................................................................GGGGTCTGGAGAGGGC...................................................................................................1680.120.12----------------------------------------------------------------------0.12

Antisense strand
GGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGCAAGCTCCCGGGCAGGTGGGTGTGCCGCGGAGGGCCAGGTCGGGGTCAGGGGTCAGAGGTCAGGTGGCCGCGTTGGCCTCCTGGGCTGCGGGTGGAGTCGGGGGTCTGGAGAGGGCAACTTGGACTCTGAGGAGACTGCTGGATGGTGTGACGGGCGTTGGGGGGCTCGGAGGTCGGAGCGTGGGGTCTGGGGGTGACAGTGGCTGCACGTAGGA
........................................................................................................................................((((((....(((....)))))))))..((....)).((.((((..........)))).)).....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189785SRR343337SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR343336SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR343335SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................ATGGTGTGACGGGCGGGGA...................................................... 1919.000.00-10.001.00---3.001.00----------------1.00-----------------1.00------1.00--------1.00------------
.................................................................................................................................................................................ATGGTGTGACGGGCGG......................................................... 1615.500.00--5.00-8.00--1.00------0.50-----------------------------------------------1.00--------
.................................................................................................................................................................................ATGGTGTGACGGGCGGG........................................................ 179.000.00-1.001.00-1.00--2.00-----2.00---------------1.00------------------1.00----------------------
.................................................................................................................................................................................ATGGTGTGACGGGCGGGG....................................................... 186.000.00--4.00----------------1.00-------------1.00-------------------------------------
.................................................................................................................................................................................ATGGTGTGACGGGCGGGAG...................................................... 192.000.00-1.00-------------------------1.00-------------------------------------------
..............................................................................................................................................................................CCCCCCAACGCCCGTCACACCATCCA.................................................. 2612.002.00----------2.00------------------------------------------------------------
.............................................................................................AACGCGGCCACCTGAC............................................................................................................................................. 1612.002.00------2.00----------------------------------------------------------------
................................................................................................AGGTGGCCGCGTTGGCCC........................................................................................................................................ 181.000.00------------------1.00----------------------------------------------------
..............................................................................................................GCCTCCTGGGCTGCGGTTC......................................................................................................................... 191.000.00----------------------------------------1.00------------------------------
..................................................................................................................................................................................TGGTGTGACGGGCGTCG....................................................... 171.000.00-1.00---------------------------------------------------------------------
...........................................................................................................................................................TGGACTCTGAGGAGACTGCCGA......................................................................... 221.000.00----------------------------------1.00------------------------------------
....................................................................................................................................TCGGGGGTCTGGAGAGT..................................................................................................... 171.000.00-------------------------------------------------------------1.00---------
.................................................................................................................................................................................ATGGTGTGACGGGCGGAG....................................................... 181.000.00-1.00---------------------------------------------------------------------
................................................................................................................................................................................GATGGTGTGACGGGCAGAG....................................................... 191.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................CGCCCGTCACACCAT.......................................................... 1520.500.50----------------------------------------------------------------0.50------
..............................................................................................................................AGACCCCCGACTCCAC............................................................................................................ 1630.330.33------------------------------------------------------------------0.33----