ID: uc003ben.2_intron_0_0_chr22_44420332_f.5p
GENE: (1)
chr22:44420282-44420531+


(2)
AGO2.ip
(2)
BRAIN
(9)
BREAST
(15)
CELL-LINE
(21)
CERVIX
(1)
HEART
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(18)
SKIN
(1)
XRN.ip

Sense strand
CCTGGGCAAGCTGGGCGGCACCCTGGCCAGGAAGCGGAGGGCGCGCGAGGGTGAGTGCGCGCCCGCGCCCGCCGACCCCCGGGGACCTGCCCGGCGGTGCCCGCCCTCGGCCCTAGAGCCCCACGAGGCCGCCCCCGCCCTCCCCCACGCACCCCGCCCGGCCCACGCGGCTGCGCGACCTTCGGGACAGGCCAGGCCTTTGACCCAGGACCCGTAAACAACGGCCGGGACCTGGCGCGTGGGGCCGCGG
..............................................................................................................................(((((((.....................(((.(((((.....))))).))).((....))...)))..))))....................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040032(GSM532917)
G603N. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783TAX577744(Rovira)
total RNA. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM532881(GSM532881)
G696N. (cervix)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040006(GSM532891)
G601N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577742(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532883(GSM532883)
G871N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
...................................................................................................................................CCCCCGCCCTCCCCCCCCG....................................................................................................1949.000.008.007.00--3.005.00-3.004.00-3.002.003.002.00--2.002.001.00--------------1.00-------1.00------1.00---1.00---------------------
..............................................................................................................................................................................GCGACCTTCGGGACAGGC..........................................................1816.006.00---6.00----------------------------------------------------------------------
........................................................................................................................................................................................................................AACAACGGCCGGGACCTGGC..............2012.002.00------2.00-------------------------------------------------------------------
...................................................................................................................................................................................CTTCGGGACAGGCCAGGC.....................................................1812.002.00------2.00-------------------------------------------------------------------
...................................................................................................................................CCCCCGCCCTCCCCCCCGG....................................................................................................192.000.00-1.00---------1.00--------------------------------------------------------------
.....................................................................................................................................CCCGCCCTCCCCCACCGGC..................................................................................................191.000.001.00-------------------------------------------------------------------------
.....................................................................................................................................................................................TCGGGACAGGCCAGGC.....................................................1611.001.00---------------1.00----------------------------------------------------------
.....................CCTGGCCAGGAAGCGGAGGGCG...............................................................................................................................................................................................................2211.001.00--------------------------------------------------1.00-----------------------
...................................................................................................................................CCCCCGCCCTCCCCCCCCA....................................................................................................191.000.00-----------------------------------------------------1.00--------------------
...................................GGAGGGCGCGCGAGGGGGG....................................................................................................................................................................................................191.000.00------------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................................AAACAACGGCCGGGA....................1511.001.00--------------------------------1.00-----------------------------------------
..........................................................GCGCCCGCGCCCGCCGGA..............................................................................................................................................................................181.000.00------------------------------------1.00-------------------------------------
......................................................GTGCGCGCCCGCGCCCG...................................................................................................................................................................................1711.001.00---------1.00----------------------------------------------------------------
..............................GAAGCGGAGGGCGCGGAG..........................................................................................................................................................................................................181.000.00-------------1.00------------------------------------------------------------
.............................................................................................................................................................................................GGCCAGGCCTTTGACCCAGGACCCGTAAACA..............................3111.001.00----------------------------------------1.00---------------------------------
..........................................................GCGCCCGCGCCCGCCGGGCG............................................................................................................................................................................201.000.00--1.00-----------------------------------------------------------------------
...................................................................................................................................CCCCCGCCCTCCCCCACGCC...................................................................................................201.000.00-----------------------1.00--------------------------------------------------
........................................................GCGCGCCCGCGCCCGCT.................................................................................................................................................................................171.000.00---------1.00----------------------------------------------------------------
............................................................................................GGCGGTGCCCGCCCT...............................................................................................................................................1511.001.00------------------------1.00-------------------------------------------------
..................................................................................................................................GCCCCCGCCCTCCCCTGGA.....................................................................................................191.000.00--1.00-----------------------------------------------------------------------
............................................................................CCCCGGGGACCTGCCGCGG...........................................................................................................................................................191.000.00--1.00-----------------------------------------------------------------------
......................................................................................................................CCCCACGAGGCCGCCCCGGCG...............................................................................................................211.000.00--------------------------------------1.00-----------------------------------
.........................................................................................................................................CCCTCCCCCACGCACCCCGCCCGGCCCACGCGG................................................................................3311.001.00-----------------------------1.00--------------------------------------------
.....................................................................................................................................................................................................CTTTGACCCAGGACCCGTA..................................1911.001.00------1.00-------------------------------------------------------------------
........................GGCCAGGAAGCGGAGGGCGC..............................................................................................................................................................................................................2011.001.00----------------------------------1.00---------------------------------------
...................................................................................................................................CCCCCGCCCTCCCCCCCAC....................................................................................................191.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................GCCCGGCCCACGCGGG...............................................................................161.000.00--1.00-----------------------------------------------------------------------
...........TGGGCGGCACCCTGGCCAGGAAGCGGAGGG.................................................................................................................................................................................................................3011.001.00-------------------------------1.00------------------------------------------
......................................................................................................................CCCCACGAGGCCGCCCCCGC................................................................................................................2011.001.00------------------------------1.00-------------------------------------------
...GGGCAAGCTGGGCGGCACC....................................................................................................................................................................................................................................1911.001.00---------------1.00----------------------------------------------------------
.........................GCCAGGAAGCGGAGGATGG..............................................................................................................................................................................................................191.000.00----------------------1.00---------------------------------------------------
...................................................................................................................................CCCCCGCCCTCCCCCCCTG....................................................................................................191.000.001.00-------------------------------------------------------------------------
..................................................................................................................................GCCCCCGCCCTCCCCCCCCG....................................................................................................201.000.00----------------------------1.00---------------------------------------------
......................................................................................................................CCCCACGAGGCCGCCCCGA.................................................................................................................191.000.00-------------------1.00------------------------------------------------------
....................................................................................................................................CCCCGCCCTCCCCCACGCC...................................................................................................191.000.00--------------------------1.00-----------------------------------------------
...................................................................................................................................CCCCCGCCCTCCCCCCACG....................................................................................................191.000.00----1.00---------------------------------------------------------------------
....................................................................................................................................CCCCGCCCTCCCCCACG.....................................................................................................1730.670.67-------------------------------------------------------------0.33----0.33-------
.....................................................................................................................................CCCGCCCTCCCCCACGC....................................................................................................1720.500.50---------------------------------------------------------------0.50----------
........................GGCCAGGAAGCGGAGG..................................................................................................................................................................................................................1630.330.33----------------------------------------------------------------0.33---------
.....................................................................CGCCGACCCCCGGGG......................................................................................................................................................................1530.330.33------------------------0.33-------------------------------------------------
.....................................................................................................................................CCCGCCCTCCCCCACG.....................................................................................................1640.250.25-------------------------------------------------------------0.25------------
......................CTGGCCAGGAAGCGG.....................................................................................................................................................................................................................1580.120.12-------------------------------------------------------------------------0.12

Antisense strand
CCTGGGCAAGCTGGGCGGCACCCTGGCCAGGAAGCGGAGGGCGCGCGAGGGTGAGTGCGCGCCCGCGCCCGCCGACCCCCGGGGACCTGCCCGGCGGTGCCCGCCCTCGGCCCTAGAGCCCCACGAGGCCGCCCCCGCCCTCCCCCACGCACCCCGCCCGGCCCACGCGGCTGCGCGACCTTCGGGACAGGCCAGGCCTTTGACCCAGGACCCGTAAACAACGGCCGGGACCTGGCGCGTGGGGCCGCGG
..............................................................................................................................(((((((.....................(((.(((((.....))))).))).((....))...)))..))))....................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040032(GSM532917)
G603N. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783TAX577744(Rovira)
total RNA. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM532881(GSM532881)
G696N. (cervix)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040006(GSM532891)
G601N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577742(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532883(GSM532883)
G871N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
.CTGGGCAAGCTGGGCAAAT...................................................................................................................................................................................................................................... 191.000.00--------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................CCTGGCGCGTGGGGCCGGG. 191.000.00------------------------------------------------------1.00-------------------
....................................................................CCGCCGACCCCCGGGGC..................................................................................................................................................................... 171.000.00---------1.00----------------------------------------------------------------
...............................................................................................................................GCCGCCCCCGCCCTCCCCCGC...................................................................................................... 211.000.00-----------------------------------------------------------1.00--------------
.......................................................................................................................................................CCCCGCCCGGCCCACGCCT................................................................................ 191.000.00---------------------------------------------------------1.00----------------
..............................GAAGCGGAGGGCGCGGGC.......................................................................................................................................................................................................... 181.000.00-------------------------------------1.00------------------------------------
..............................................................................................................................GGCCGCCCCCGCCCTGGTC......................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
.................................................................CGCCCGCCGACCCCCT......................................................................................................................................................................... 161.000.00--------------------------------------------------------1.00-----------------
......................................................................................................................................................................................................................................CCTGGCGCGTGGGGCCGGTA 201.000.00--------------------1.00-----------------------------------------------------
..............................................................................CCGGGGACCTGCCCGGCT.......................................................................................................................................................... 181.000.00-----------------------------------1.00--------------------------------------
........................................................GCGCGCCCGCGCCCGCCTC............................................................................................................................................................................... 191.000.00--------------------1.00-----------------------------------------------------
..................................................................GCCCGCCGACCCCCGCGA...................................................................................................................................................................... 181.000.00----1.00---------------------------------------------------------------------
.......................................................................................................................................................CCCCGCCCGGCCCACGCGG................................................................................ 191.000.00---------------------1.00----------------------------------------------------
......................................................................................................................................................................................................................................CCTGGCGCGTGGGGCCGGGA 201.000.00---------------------------------------------------1.00----------------------
................................................................................................................................CCGCCCCCGCCCTCCCTGT....................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
..............................GAAGCGGAGGGCGCGGCCG......................................................................................................................................................................................................... 191.000.00---------------------------------------------1.00----------------------------
.................................................................................GGGACCTGCCCGGCGGGGT...................................................................................................................................................... 191.000.00------------------------------------------------------------1.00-------------
.................................................................................GGGACCTGCCCGGCGGGGGT..................................................................................................................................................... 201.000.00-----------------------------------------------1.00--------------------------
..............................GAAGCGGAGGGCGCGGA........................................................................................................................................................................................................... 171.000.00-------------------1.00------------------------------------------------------
......................................................GGCGGGCGCGGGCGCGCAC................................................................................................................................................................................. 1911.001.00-------------------------------------------1.00------------------------------
........................................................................................................................................................CCCGCCCGGCCCACGCCAG............................................................................... 191.000.00--------------------------------------------1.00-----------------------------
..............................................................................................................................GGCCGCCCCCGCCCTCCCCCAGG..................................................................................................... 231.000.00---------------------------1.00----------------------------------------------
.....................................................................................................................................CCCGCCCTCCCCCACAGAG.................................................................................................. 191.000.00----------------------------------------------------------1.00---------------
..............................................CGGGCGCGCACTCACCCTC......................................................................................................................................................................................... 1911.001.00------------------------------------------1.00-------------------------------
.CTGGGCAAGCTGGGCCGAG...................................................................................................................................................................................................................................... 191.000.00----------------------1.00---------------------------------------------------
................................................................................................................................CCGCCCCCGCCCTCCTGGC....................................................................................................... 191.000.00---------------------------------------1.00----------------------------------
...............................................................................................................................GGAGGGCGGGGGCGGC........................................................................................................... 1650.600.60--0.20--------------------0.20---------------------------------------------0.20----
..........................................................TCGGCGGGCGCGGGCGC............................................................................................................................................................................... 1720.500.50--------------------------------------------------------------0.50-----------
..................................................................CCCGGGGGTCGGCGGGC....................................................................................................................................................................... 1720.500.50--0.50-----------------------------------------------------------------------
......................................................................................................................................TGCGTGGGGGAGGGCGG................................................................................................... 1720.500.50---------0.50----------------------------------------------------------------
........................................................CGGCGGGCGCGGGCGCGC................................................................................................................................................................................ 1850.400.40--------------0.20----------0.20------------------------------------------------
........................................................................................................................................................GCGTGGGCCGGGCGGG.................................................................................. 1630.330.33-----------------------------------------------------------------0.33--------
.............................................................GTCGGCGGGCGCGGG.............................................................................................................................................................................. 1560.330.33----------------------------------------------------------------------0.170.17--
..................................................................................................................................TGGGGGAGGGCGGGGGC....................................................................................................... 1740.250.25-------------------------------------------------------------------0.25------
........................................................GCGCGCCCGCGCCCGCCGCC.............................................................................................................................................................................. 200.200.00-----------------------0.20--------------------------------------------------
...............................................................................................................................GCCGCCCCCGCCCTCCAGGG....................................................................................................... 200.200.00--------------------------------------------------------------------0.20-----
............................................................TCGGCGGGCGCGGGC............................................................................................................................................................................... 1570.140.14------------------------------------------------------------------------0.14-