ID: uc003bdd.4
GENE: ARFGAP3(11)
chr22:43206901-43207150-


(1)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(8)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................CAGGACGAGTGTCAACAAGGAC....................................................................................22145.0045.0039.001.00-----2.00-2.00----------1.00----------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGA.....................................................................................21118.0018.008.002.00--2.00-------1.00------------------------1.00----------1.00----1.00--1.00---1.00------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACA...................................................2318.008.005.00--2.00-----------------------------------1.00---------------------------
..............................................................................................................................................CCCAGGACGAGTGTCAACAAGG......................................................................................2216.006.006.00------------------------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGA.....................................................................................2216.006.001.001.00------------------------------1.00-------1.00--------1.00-1.00---------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGAA....................................................................................2215.0018.00---1.00--2.00------1.00------------1.00----------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTA.....................................................2314.004.00----------------1.00---------------------1.00----1.001.00----------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACA...................................................................................2314.0045.003.00-----------------1.00------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAG.......................................................................................2013.003.00-----3.00-------------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAG.......................................................................................1913.003.00--3.00----------------------------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACA...................................................2412.002.00-----------------------1.001.00------------------------------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTAC....................................................2212.002.00---------------1.00-------------------------1.00-------------------------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGA.............................1612.002.00--------2.00----------------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAAAG..................................................................................2511.006.00-----------1.00-------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGG......................................................................................2011.001.00---------------------------------1.00---------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACAGG.................................................261.000.00---------------------------1.00---------------------------------------
.........................................................................................................................ACATCTGTGGAAGTGTGGT..............................................................................................................191.000.00------------------------------------1.00------------------------------
.........................................................................................................................................................................................................TACTTTGACGAGCCAGTGGAGTTAA........................2511.001.00----------------------------------------------------------1.00--------
...................................................................................................................................................................................................................................GAGCAGTTCTTTCTCTAG.....1811.001.00--------------------------------------------------1.00----------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGG......................................................................................2111.001.00-------------------1.00-----------------------------------------------
...............................................................................................................................................................................................................GACGAGCCAGTGGAGTTA.........................1811.001.00--------------------------------------------------------------1.00----
..........................................................................................................................................................................................................................GGAGTTAAGGAGCAGT................1611.001.00--------------1.00----------------------------------------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCT......................................................2011.001.00---------------------1.00---------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCT......................................................2111.001.00-----------------------------------1.00-------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACT...................................................................................2311.0045.00----1.00--------------------------------------------------------------
..............................................................................................................................................................ACAAGGACCTCCAAAGTCACTG......................................................................2211.001.00----------------------------------1.00--------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTTT....................................................2411.001.00-------------------------1.00-----------------------------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACAGC.................................................251.000.001.00------------------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAA........................................................................................1811.001.00----------------------1.00--------------------------------------------
........................................................................................................................................................................................................................GTGGAGTTAAGGAGCAGTT...............1911.001.00-----------------------------------------------------------1.00-------
........................................................................................................................................................................CCAAAGTCACTGTTGTACTCTTGCTCCTACAG..................................................3211.001.00----------------------------1.00--------------------------------------
...................................................CGTGTCTGCTCCTGTCGCC....................................................................................................................................................................................191.000.00-------------------------------1.00-----------------------------------
.....................................................................................................................................................................CCTCCAAAGTCACTGTTGTA.................................................................2011.001.00----------1.00--------------------------------------------------------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCT.........3311.001.00-----------------1.00-------------------------------------------------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAG.......................1911.001.00------------------------------------------1.00------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTAA....................................................2411.004.00----------------------------------------------1.00--------------------
.......................................AATGACACACCTCGTTG..................................................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGC...................1711.001.00----------------------------------------------------1.00--------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTA.....................................................2211.001.00-----------------------------1.00-------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCT......................................................2211.001.00-----------------------------------------------1.00-------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAC....................................................................................2311.001.00---------------------------------------------------------1.00---------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGCA..................1811.001.00------------------------------1.00------------------------------------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGAGTTA.........................2011.001.00-------------------------------------------------------------1.00-----
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTAC....................................................2311.001.00---------------------------------------------1.00---------------------
...............................................................................................................................................................................CACTGTTGTACTCTTG...........................................................1630.330.33---------------------------------------------------------------0.33---
...........TGAACACAGGTACTT................................................................................................................................................................................................................................1560.330.33----------------------------------------------------------------0.33--
..........TTGAACACAGGTACT.................................................................................................................................................................................................................................1580.120.12-----------------------------------------------------------------0.12-

Antisense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................TCCAAAGTCACTGTTCAG................................................................. 181.000.00-------------------------------------------------------1.00-----------
..............................................................................................................AGGCATCCCCCACATTTT.......................................................................................................................... 181.000.00------------------------------------------------------1.00------------
........................................................AATGAGACAGGAGCAG.................................................................................................................................................................................. 1690.110.11------------------------------------------------------------------0.11