ID: uc003bcs.2_intron_5_0_chr22_42973969_r.3p
GENE: (2)
chr22:42973919-42974168-


(2)
AGO1.ip
(2)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(3)
BREAST
(19)
CELL-LINE
(2)
HEART
(2)
HELA
(1)
LIVER
(2)
OTHER
(13)
SKIN
(1)
XRN.ip

Sense strand
AGAGCAGGAATATCGACCTCCATATTGTCCCTGGGGAACAGGTCGGAGGCCATGGTGCCCACAGTCTCCCGGCTTGGGCAGATGTGGCTGTGGCTCTGAGTCCTTCAGCGGCGCTGGATCCCTGGCAGCGCCACCCATGGTGGAGGGAGGCTTTGGGATGGCCCTGCGGATGCTCACACTTGGCTTCCCTCTCCCTGCAGCAGGAGAGCCTGTCCTGCCTCCAGTCCACCTGTGGCCTTGTCCAGTCTGT
..........................................................................................................................................((..((((((((((..((..((((((...))..)).))..)).))))))))))..)).......................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189786SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCAGT.................................................2212.000.008.00-----2.00--1.00-------1.00-----------------------------------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGCAGA.................................................2112.000.002.00--------1.001.001.00-1.00----1.00--1.00--1.00--1.00-1.00---1.00-------------------
.........................................................................................................................................TGGTGGAGGGAGGCTTTGGGAT...........................................................................................2216.006.006.00----------------------------------------------------
.................................................................................................................................................................CCCTGCGGATGCTCACGC.......................................................................184.000.00-----3.00--------------------------------------1.00--------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGCAGT.................................................214.000.001.00-------------------1.00--1.00--1.00--------------------------
.............................................................................................................................................GGAGGGAGGCTTTGGGATGGCCCTGCGG.................................................................................2814.004.00------------2.00-2.00--------------------------------------
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCAGAT................................................233.000.00--3.00--------------------------------------------------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGCAGAAT...............................................232.000.00---------------2.00-------------------------------------
.................................................................................................................................................................CCCTGCGGATGCTCACG........................................................................172.000.002.00----------------------------------------------------
...................................................................................................................................................AGGCTTTGGGATGGCCCTGCGGACG..............................................................................252.000.00-2.00---------------------------------------------------
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCAGCAA...............................................241.000.00----------------------------1.00------------------------
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCAGA.................................................221.000.00--1.00--------------------------------------------------
...............................................................GTCTCCCGGCTTGGGCTTT........................................................................................................................................................................191.000.00-------------------1.00---------------------------------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGCAGTT................................................221.000.001.00----------------------------------------------------
.............................................................................................................................................................................TCACACTTGGCTTCCCTCTCCCTTC....................................................251.000.00---1.00-------------------------------------------------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGCATT.................................................211.000.00----------------1.00------------------------------------
....................................................................................................................................................................................TGGCTTCCCTCTCCCTGAAGA.................................................211.000.00----------1.00------------------------------------------
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCAGAA................................................231.000.00------1.00----------------------------------------------
.........................................................................................................................................TGGTGGAGGGAGGCTTTGGGCT...........................................................................................221.000.00-------------------------------1.00---------------------
..................................................................TCCCGGCTTGGGCAGTCAG.....................................................................................................................................................................191.000.00-------------------------------------------1.00---------
...............................................................................AGATGTGGCTGTGGCTAGTA.......................................................................................................................................................201.000.00-----------------------------------------1.00-----------
..................................................................................................................................................................CCTGCGGATGCTCACGCAA.....................................................................191.000.00----------------------1.00------------------------------
..........................................................................................................................................GGTGGAGGGAGGCTTTGTG.............................................................................................191.000.00---------------------------------------------1.00-------
..................................................................................................................................................................CCTGCGGATGCTCACGCA......................................................................181.000.00---1.00-------------------------------------------------
......................................................GTGCCCACAGTCTCCACCA.................................................................................................................................................................................191.000.00----------------1.00------------------------------------
.........................................................................................................................................TGGTGGAGGGAGGCTTTGA..............................................................................................191.000.00-------------------------------------1.00---------------
.............................................................................................................................................................................TCACACTTGGCTTCCCTCTCC........................................................2121.001.000.50-------0.50--------------------------------------------
............................................................................................................................................TGGAGGGAGGCTTTGGGATGGCC.......................................................................................2311.001.00-----------------------------------1.00-----------------
.........................................................................................................................................................................................................................CCTCCAGTCCACCTGTGG...............1811.001.00-----------1.00-----------------------------------------
............................................................................GGCAGATGTGGCTGTGGCTCCG........................................................................................................................................................221.000.00-------1.00---------------------------------------------
.........................................................................................................................................................TGGGATGGCCCTGCGGATGCTCCACT.......................................................................261.000.00----------------------------------------1.00------------
.............................................................................................................................................................................TCACACTTGGCTTCCCTCTCCAA......................................................2321.001.00--------1.00--------------------------------------------
..................................................................................................................................................................CCTGCGGATGCTCACG........................................................................161.000.00------------------------------------------1.00----------
............................................................................................................................................TGGAGGGAGGCTTTGGGATGGCCCTTT...................................................................................271.000.00------------------------------------1.00----------------
...................................................................................................................................................................................TTGGCTTCCCTCTCCCTGCA...................................................2011.001.00------------------------------1.00----------------------
...............................................................................................................................................................................ACACTTGGCTTCCCTCAG.........................................................181.000.00--------------------------------------1.00--------------
.....................................................................CGGCTTGGGCAGATGTGGC..................................................................................................................................................................1921.001.00----------------------------------------------0.500.50-----
............................................................................................................................................TGGAGGGAGGCTTTGGG.............................................................................................1711.001.00-1.00---------------------------------------------------
.................................................................CTCCCGGCTTGGGCAGATGTGGCTGTGGCA...........................................................................................................................................................301.000.00----------------------------------1.00------------------
............................................................................................................................................................GATGGCCCTGCGGATGCTA...........................................................................191.000.00-------------1.00---------------------------------------
........................TTGTCCCTGGGGAACAGG................................................................................................................................................................................................................1830.670.67-------0.67---------------------------------------------
..........................GTCCCTGGGGAACAGGTCGGAGGCC.......................................................................................................................................................................................................2520.500.50-------0.50---------------------------------------------
.............................................................................................................................................................................TCACACTTGGCTTCCCTCTCCCTG.....................................................2420.500.50--------0.50--------------------------------------------
.................CTCCATATTGTCCCTGGGGAACAGGTCGG............................................................................................................................................................................................................2920.500.50----0.50------------------------------------------------
.......................ATTGTCCCTGGGGAACAGG................................................................................................................................................................................................................1920.500.50-0.50---------------------------------------------------
.......................................................................................................................................CATGGTGGAGGGAGGC...................................................................................................1670.430.43---------------------------------------------------0.290.14
......................................CAGGTCGGAGGCCATGG...................................................................................................................................................................................................1730.330.33--------------------------------------------------0.33--

Antisense strand
AGAGCAGGAATATCGACCTCCATATTGTCCCTGGGGAACAGGTCGGAGGCCATGGTGCCCACAGTCTCCCGGCTTGGGCAGATGTGGCTGTGGCTCTGAGTCCTTCAGCGGCGCTGGATCCCTGGCAGCGCCACCCATGGTGGAGGGAGGCTTTGGGATGGCCCTGCGGATGCTCACACTTGGCTTCCCTCTCCCTGCAGCAGGAGAGCCTGTCCTGCCTCCAGTCCACCTGTGGCCTTGTCCAGTCTGT
..........................................................................................................................................((..((((((((((..((..((((((...))..)).))..)).))))))))))..)).......................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189786SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................CCACAGTCTCCCGGCTAG.............................................................................................................................................................................. 182.000.00----2.00------------------------------------------------
........................................................................................................................CCTGGCAGCGCCACCTGT................................................................................................................ 182.000.002.00----------------------------------------------------
......................................................................................................................................................................................................................CTGCCTCCAGTCCACCAGGC................ 201.000.00----1.00------------------------------------------------
.....................................................................................................................................................................................................................................CTGTGGCCTTGTCCATCAG.. 191.000.00---1.00-------------------------------------------------
.....................ATATTGTCCCTGGGGAACTTA................................................................................................................................................................................................................ 211.000.00--------------------------------1.00--------------------
...................................................................................................................................................................CTGCGGATGCTCACATCTG.................................................................... 191.000.00---1.00-------------------------------------------------
....................................................................................................................................................................................................................TCCTGCCTCCAGTCCAAA.................... 181.000.00---------------------------------------1.00-------------
.........................................................................................................................................................................................................................CCTCCAGTCCACCTGTGGCC............. 201.000.00-1.00---------------------------------------------------
..................................................................................................................................................................................................................GGTGGACTGGAGGCAGGACA.................... 2011.001.00-------------------------1.00---------------------------
....................................................................................................................................................................................................................GTGGACTGGAGGCAGGA..................... 1720.500.50------------------------------------------------0.50----
............................................................................................CTGAAGGACTCAGAGC.............................................................................................................................................. 1630.330.33-------------------------------------------------0.33---