ID: uc003bcs.2_intron_2_0_chr22_42972133_r
GENE: (5)
chr22:42972083-42972567-


(1)
AGO2.ip
(13)
B-CELL
(5)
BRAIN
(7)
BREAST
(26)
CELL-LINE
(7)
CERVIX
(2)
HEART
(2)
HELA
(1)
KIDNEY
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(24)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GGGTGGAAGTGGACACGTTCATGGAGGCATATGACCAGAAGATCGCTGAGGTAGAGGCCCCGCGGGGTCGGCCGAGCCCCGCGTCGCCCGTGTGGCTGTGGGAAGGTGGCGCCCCAGAGGGAGGGCGGTGGTGTCCTGTCCTTGGCCACTCTGTAGAGGCCAGGCTCCCTGTTTCCCTGCTGGATCCTGGGCTGCCTGGTTGGGTGACACATGTAGTCTCCACATGGTCTACAGTGGAGAAGGAGGCAGCGCCAGCAGGTCCGTGCCCTCCCCGCCCTCCTTAGCCCCAACACTGTGCTGGGAGGAGGGGAGCAGCCCTCCCCTGCGGGGGCTCAGGGCAGTTCTGACTTTGGGAGGAGGGCGTGGAGGGCGCGCTGCTGGAGGCTGCGGGAGGTCCCAGGCGCCCACCGGACGATGGGATCACCTTCCTTGCAGGAAGAAGCTAAGGCCAAGGAGGAGGAGGGGGTCCCTGACGAGGAGGGCTG
........................................................................................................................................................................................................................(((((((.((.....))))))))).(((((((..(((....)))...)))).)))..(((((....((((((.......(((.(((.((((((......)))))))))))))))))).)))))..................................................................................................................................................
...................................................................................................................................................................................................................212.............................................................................................................................340...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR040014(GSM532899)
G623N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM532872(GSM532872)
G652T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................................................................................................................................................................CTCCCCTGCGGGGGCGCGC.....................................................................................................................................................197.000.00-----------1.00--------2.00---2.00-----------------------------1.00--------1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGATGGGATCACCTTCCTTGCAG..................................................2716.006.00---5.00--1.00-----------------------------------------------------------------------------------------------
................................GACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1825.505.50----1.50-----------------------------0.50-----------------1.00--0.50--------------------0.50-0.50------------0.50---0.50------
........................................................................................................................................................................................................................................................................................................................................................................GCGTGGAGGGCGCGCTGCTGGAGGCTGCGGGAGGTCCCAGGCGCCCACCGGACGATGGGATCACCTTCCTTGC....................................................7315.005.00--5.00---------------------------------------------------------------------------------------------------
....................................AGAAGATCGCTGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................185.000.00---------------------------2.00-1.00------------------1.00----------------1.00------------------------------------
...........................CATATGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2324.004.00----0.50----------------------------1.50----1.50----------------------------------0.50----------------------------
.................................ACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1723.003.00----------------------0.50-------------0.50--------------------------------------0.50-----0.50-0.500.50-----------------
..................................CCAGAAGATCGCTGAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00-------------------2.00-1.00--------------------------------------------------------------------------------
...............................TGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1923.003.00----1.00-----------------0.50-----------------------------------------------1.00------------------0.50------------
.....................TGGAGGCATATGACCAGAAGATCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2622.000.50-----------------------2.00------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCTCCACATGGTCTAGC............................................................................................................................................................................................................................................................172.000.00-------------------------------------------1.00-------------------------1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGACGATGGGATCACCT...........................................................2112.002.00------1.00----------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGCTGGAGGCTGG.................................................................................................182.000.00-----------------2.00------------------------------------------------------------------------------------
.............................TATGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.501.50--------------0.50------------------------0.50----------------------------------------------0.50---------------
.......................GAGGCATATGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.501.50-----------------------------0.50--------------------------------------------0.50---------------0.50-----------
................................................................................................................................................................................................................................................................................CGCCCTCCTTAGCCCCAACA.................................................................................................................................................................................................2011.001.00----------------------------------------------------------1.00-------------------------------------------
....................................................................................................................GAGGGAGGGCGGTGGTGTAGTG...........................................................................................................................................................................................................................................................................................................................................................221.000.00---------1.00--------------------------------------------------------------------------------------------
..............................................TGAGGTAGAGGCCCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-----1.00------------------------------------------------------------------------------------------------
..................TCATGGAGGCATATGACCAGAAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.001.001.00-----------------------------------------------------------------------------------------------------
........................AGGCATATGACCAGAAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------------------------------------1.00------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGGAGGAGGAGGGGGTCCCCG.............271.000.00-1.00----------------------------------------------------------------------------------------------------
....................................AGAAGATCGCTGAGGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CCCTCCCCTGCGGGGGCGGC......................................................................................................................................................201.000.00------------1.00-----------------------------------------------------------------------------------------
..........................................................................................TGTGGCTGTGGGAAGGTG.........................................................................................................................................................................................................................................................................................................................................................................................1821.001.00-------0.50-------------------------------------0.50--------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGAGGAGGGGGTCA................201.000.00----1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCTCCACATGGTCTAGCGG..........................................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00------------------------------------------------------------
.........................................................CCCCGCGGGGTCGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1821.001.00-------------1.00----------------------------------------------------------------------------------------
.....................TGGAGGCATATGACCAGAAGATCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.001.000.50----------------------------------------------------------------------------0.50------------------------
....................ATGGAGGCATATGACCAGAAGATCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00-1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCCAAGGAGGAGGAGGGGGTCCCTGACG..........3221.001.00-1.00----------------------------------------------------------------------------------------------------
...................CATGGAGGCATATGACCAGAAGATCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.001.001.00-----------------------------------------------------------------------------------------------------
.......................................................GGCCCCGCGGGGTCGGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------1.00-------------------------------------------------------
.....................TGGAGGCATATGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.001.00---------0.50---------------------------0.50----------------------------------------------------------------
....................................AGAAGATCGCTGAGGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------1.00-----------------------------------------
......................................................................................................................GGGAGGGCGGTGGTGTCCTGTCTT.......................................................................................................................................................................................................................................................................................................................................................241.000.00--------------------------------------------------------------------1.00---------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGGGG...................1601.001.00----------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................GGGAGGAGGGGAGCAGAAAG......................................................................................................................................................................201.000.00------------------1.00-----------------------------------------------------------------------------------
.............................TATGACCAGAAGATCGCTGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------------------------------------------------------------------
.......................GAGGCATATGACCAGAAGATCGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.000.50-------------------------1.00----------------------------------------------------------------------------
..................................................GTAGAGGCCCCGCGGGGTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2221.001.00------------0.50-----------------------------------------------------------0.50-----------------------------
...............................................................GGGGTCGGCCGAGCCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................................TGGGCTGCCTGGTTGTA.........................................................................................................................................................................................................................................................................................171.000.00----------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGGGTCCCTGACGAGGAGGGCCGGG331.000.00-1.00----------------------------------------------------------------------------------------------------
...................................CAGAAGATCGCTGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGCTAAGGCCAAGGAGGAGGAGGGGGCCCC...............341.000.00-1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................AGTGGAGAAGGAGGCAGAGT.........................................................................................................................................................................................................................................201.000.00--------------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGGGGTGCC...............201.000.00----------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGGGGTTG................191.000.00-----------------------------------------------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGCTGGAGGCTGGTG...............................................................................................201.000.00----------------1.00-------------------------------------------------------------------------------------
..............................ATGACCAGAAGATCGCTGAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00--------------------------------1.00---------------------------------------------------------------------
.....................TGGAGGCATATGACCAGAAGATCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.001.001.00-----------------------------------------------------------------------------------------------------
.........................................................CCCCGCGGGGTCGGCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1921.001.00----------------------------------------1.00-------------------------------------------------------------
.........TGGACACGTTCATGGAGGCATATGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.001.001.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CATGGTCTACAGTGGAGA.....................................................................................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................GAGGGAGGGCGGTGGAAG...............................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------1.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCGGGAGGTCTTGG.....................................................................................191.000.00------------------------------------1.00-----------------------------------------------------------------
.........................................................CCCCGCGGGGTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1521.001.00-----------0.50-----------------------------------------------0.50------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGAGGTCCCAGGTTC.................................................................................191.000.00-----------1.00------------------------------------------------------------------------------------------
..........................................................CCCGCGGGGTCGGCCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................1821.000.50--------------------------------------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGGGGTCC................1921.001.00-----------------------------0.50--------------------------------------------------------------0.50---------
.................TTCATGGAGGCATATGACCAGAAGATCGCTGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................351.000.00-------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GGCGTGGAGGGCGCGCAA............................................................................................................181.000.00---------------1.00--------------------------------------------------------------------------------------
..................................................GTAGAGGCCCCGCGGGGTAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------------------------------------------------1.00----------------------------------------
..........................................................................................TGTGGCTGTGGGAAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGAGGAGGGGGTA.................191.000.00----------1.00-------------------------------------------------------------------------------------------
...............................TGACCAGAAGATCGCTGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00----------------1.00-------------------------------------------------------------------------------------
..................................................GTAGAGGCCCCGCGGGGTCGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2321.001.00------1.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................TCTGACTTTGGGAGGGTC.............................................................................................................................181.000.00-------------------------------------------------------------------1.00----------------------------------
.......................................................GGCCCCGCGGGGTCGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------1.00--------------------------------------------------------------------------------------
........................................................GCCCCGCGGGGTCGGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................1940.750.25-------------0.50--------------------------0.25-------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................ACACTGTGCTGGGAGGAGGG................................................................................................................................................................................2030.670.67-------------------------------0.67----------------------------------------------------------------------
.........TGGACACGTTCATGGAGGCATATGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.500.50-----------------------------------------------------------------------------------------------------
...TGGAAGTGGACACGTTCATGGAGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.500.50-----------------------------------------------------------------------------------------------------
.................................ACCAGAAGATCGCTGAGGTAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50-------------------------------------------------0.50----------------------------------------------------
...................................CAGAAGATCGCTGAGGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50--------------0.50---------------------------------------------------------------------------------------
......................GGAGGCATATGACCAGAAGATCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.500.50------0.50-----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGGAGGAGGAGGGGGTCCCTG.............2720.500.50-0.50----------------------------------------------------------------------------------------------------
......................GGAGGCATATGACCAGAAGATCGCTGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.500.50-------0.50----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGAGGAGGGGGTCC................2020.500.50----------------------------------------------------------------------------------------0.50-------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGGAGGAGGAGGGGGTCCCTGACG..........3020.500.50-0.50----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCAAGGAGGAGGAGGGGGTCC................2520.500.50---------------------------------------------------------------------------------------0.50--------------
....................................AGAAGATCGCTGAGGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50-----------------------------------0.50------------------------------------------------------------------
.....................TGGAGGCATATGACCAGAAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.500.50-----------------------------------------------------------------------------------------------------
...........................................................................................GTGGCTGTGGGAAGGTGGCGC.....................................................................................................................................................................................................................................................................................................................................................................................2120.500.50---------------------------------------0.50--------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGAGGAGGGGGTCCC...............2120.500.50----------0.50-------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGCTGGATCCTGGGCTGC..................................................................................................................................................................................................................................................................................................1920.500.50-----------------------------------------------------------0.50------------------------------------------
..........................................................CCCGCGGGGTCGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................1520.500.50-------------------------------------------------------------------------------------0.50----------------
..GTGGAAGTGGACACGTTCATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.500.500.50-----------------------------------------------------------------------------------------------------
......................................................................................CCCGTGTGGCTGTGGGAA.............................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------------------------------------0.50-------
..............................................TGAGGTAGAGGCCCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50-----0.50------------------------------------------------------------------------------------------------
.GGTGGAAGTGGACACGTTCATGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.500.50---------------------------------------------0.50--------------------------------------------------------
.......................GAGGCATATGACCAGAAGATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50---------0.50--------------------------------------------------------------------------------------------
.GGTGGAAGTGGACACGTTCATGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.50--------------------------------------------------------------------------------0.50---------------------
.................................................................................................................................................................................................................................................................................................................................CCTGCGGGGGCTCAGGGCAGTT..............................................................................................................................................2220.500.50-------------------------------0.50----------------------------------------------------------------------
.........................GGCATATGACCAGAAGATCGCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.500.50-------------------------------------------------------0.50----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGGGAGGAGGGCGTGGAGGGCG.................................................................................................................2220.500.50-------------------------------------------------------------------------------0.50----------------------
...................................CAGAAGATCGCTGAGGTAGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50---------------------------------------0.50--------------------------------------------------------------
..............................ATGACCAGAAGATCGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50-------------------------------0.50----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................TCTGACTTTGGGAGGAG..............................................................................................................................1720.500.50-----------------------------------------------------------------------0.50------------------------------
............................ATATGACCAGAAGATCGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50----------------------------------------------------------------------------------0.50-------------------
........................AGGCATATGACCAGAAGATCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50-------------------------------------------------0.50----------------------------------------------------
.................TTCATGGAGGCATATGACCAGAAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.500.50-----------------------------------------------------------------------------------------------------
.....................TGGAGGCATATGACCAGAAGATCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.500.500.50-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGGGGTC.................1830.330.33-------------------------------------------------------------------------------------------------0.33----
...................................................................................................................................................................................................................................................................................................................................................................................GCGCTGCTGGAGGCTGC.................................................................................................1730.330.33--------------------------------------------------------------------------------------------------0.33---
......................................................................................................................................................................................................................................................................GTGCCCTCCCCGCCCTCC.............................................................................................................................................................................................................1830.330.33------------------------------------------------------------------------------------------------0.33-----
..................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGCTGGAGGC....................................................................................................1580.250.25---------------------------------------------------------------------------------------------------0.25--
.................................................................................................................................................................................................................................................................................................................................................................................GCGCGCTGCTGGAGGC....................................................................................................1640.250.25-----------------------------------------------------------------------------------------------------0.25
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCAAGGAGGAGGAG.......................1840.250.25--------------0.25---------------------------------------------------------------------------------------
........................................................GCCCCGCGGGGTCGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................1840.250.25---------------0.25--------------------------------------------------------------------------------------
........................................................GCCCCGCGGGGTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1540.250.25----------------------------------------------------------------------------------------------------0.25-
..................................................................................................................................................................................................................................................................................................................................................................AGGAGGGCGTGGAGGG...................................................................................................................1650.200.20-----------------------------------------0.20------------------------------------------------------------

Antisense strand
GGGTGGAAGTGGACACGTTCATGGAGGCATATGACCAGAAGATCGCTGAGGTAGAGGCCCCGCGGGGTCGGCCGAGCCCCGCGTCGCCCGTGTGGCTGTGGGAAGGTGGCGCCCCAGAGGGAGGGCGGTGGTGTCCTGTCCTTGGCCACTCTGTAGAGGCCAGGCTCCCTGTTTCCCTGCTGGATCCTGGGCTGCCTGGTTGGGTGACACATGTAGTCTCCACATGGTCTACAGTGGAGAAGGAGGCAGCGCCAGCAGGTCCGTGCCCTCCCCGCCCTCCTTAGCCCCAACACTGTGCTGGGAGGAGGGGAGCAGCCCTCCCCTGCGGGGGCTCAGGGCAGTTCTGACTTTGGGAGGAGGGCGTGGAGGGCGCGCTGCTGGAGGCTGCGGGAGGTCCCAGGCGCCCACCGGACGATGGGATCACCTTCCTTGCAGGAAGAAGCTAAGGCCAAGGAGGAGGAGGGGGTCCCTGACGAGGAGGGCTG
........................................................................................................................................................................................................................(((((((.((.....))))))))).(((((((..(((....)))...)))).)))..(((((....((((((.......(((.(((.((((((......)))))))))))))))))).)))))..................................................................................................................................................
...................................................................................................................................................................................................................212.............................................................................................................................340...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR040014(GSM532899)
G623N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM532872(GSM532872)
G652T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................................................................................................CCTCCCCGCCCTCCTTTTT........................................................................................................................................................................................................ 193.000.00--------3.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................GGCTCCCTGTTTCCCAAG................................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................CTCCCCGCCCTCCTTATGC....................................................................................................................................................................................................... 191.000.00---------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGAGGAGGAGGGCGC.................. 201.000.00---------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................CCCCGCCCTCCTTAGGG....................................................................................................................................................................................................... 171.000.00------------------------------------------------------------------1.00-----------------------------------
........................................................................................................................................................................................................................................................................GCCCTCCCCGCCCTCCCCCC......................................................................................................................................................................................................... 201.000.00---------------------------------------------------------1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGCGCCCACCGCCGG....................................................................... 191.000.00----------------------------------------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................ATGTAGTCTCCACATAT.................................................................................................................................................................................................................................................................. 171.000.00--------------------------------------------------------------1.00---------------------------------------
...................................CAGAAGATCGCTGAGGTAGAGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 2421.000.00------------------------------1.00-----------------------------------------------------------------------
...........................................................................GCCCCGCGTCGCCCGGC......................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-------------1.00----------------------------------------------------------------------------------------
........................................................................CGAGCCCCGCGTCGCACGA.......................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----1.00------------------------------------------------------------------------------------------------
..........................................................CCCGCGGGGTCGGCCGAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00-----1.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................CACTGTGCTGGGAGGACG................................................................................................................................................................................. 181.000.00--------------------------------------------------------1.00---------------------------------------------
............................................................................................................................................CTTGGCCACTCTGTATTG....................................................................................................................................................................................................................................................................................................................................... 181.000.00-----1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGGGTCCCTGACGAGGAGGA... 271.000.00------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGAGGAGGAGGGGGTTA................ 221.000.00--------------------------------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................................................................................................CCCTCCCCGCCCTCCTAGCG........................................................................................................................................................................................................ 201.000.00----------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGAGGAGGAGTCG.................... 181.000.00---------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................................................................................................................................................GTCCGTGCCCTCCCCGCTT................................................................................................................................................................................................................ 191.000.00-------------------------------------1.00----------------------------------------------------------------
...................................................................................................................................................................................................................................................................TCCGTGCCCTCCCCGGGA................................................................................................................................................................................................................ 181.000.00------------------------------------------1.00-----------------------------------------------------------
...........................................................................................................................................................................................................................................................CCAGCAGGTCCGTGCAGA........................................................................................................................................................................................................................ 181.000.00--------------------------1.00---------------------------------------------------------------------------
...................................................CGGCCGACCCCGCGGGGCCTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................... 2320.500.50---------------------------------------------------------------------------------------------0.50--------
.......................................................................................................................................................................................................................GTAGACCATGTGGAGAC............................................................................................................................................................................................................................................................. 1720.500.50--------------------------------0.50---------------------------------------------------------------------
..................................GCCTCTACCTCAGCGATCTTCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................... 2420.500.50------------------------------0.50-----------------------------------------------------------------------
.....................................................................................................TGGGGCGCCACCTTC................................................................................................................................................................................................................................................................................................................................................................................. 1540.250.25------------------------------0.25-----------------------------------------------------------------------