ID: uc003bcd.1_intron_1_0_chr22_42487605_f.3p
GENE: LOC100132273(2)
chr22:42487923-42488172+


(12)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
ATAATAATAAAATGGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTAGCCACTGTTCTCTAGTTCTCTAGGTACATTAACTTGGCTAGGCTTCACAACACACCAGTGAGATTGTGTTGATATACCCTTTTTTTTTTTTTTTTTTGAGACAGAGTGAGACTCACCTAGGCTGGACTGCAATGGTGCAATCTCGGCTCACTGC
...........................................................................(((.((((((.(((.....((((((.(((..(((((....))))).)))......)))))))))....(((((((..........))))))).......................)))))))))...................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTG........................................................25414.7514.753.256.25-3.252.00--------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTTG.........................................................267.000.003.002.00--1.00-1.00------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTATG........................................................236.000.003.001.00--2.00--------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTCAAG.......................................................245.000.00---2.003.00--------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTTG...........................................................235.000.005.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTGG.........................................................245.000.002.002.00-1.00---------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTTGGG......................................................254.000.00--4.00----------------------
...........................................................................TGTCCTTAGATGTCCGG..............................................................................................................................................................174.000.00---------1.00----1.001.00--1.00------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTTTTG.......................................................283.000.002.00--1.00---------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTAT.........................................................223.000.00-2.001.00----------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTTTG........................................................2713.003.003.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTCCTG.....................................................283.000.00-1.00-2.00---------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTTGAC......................................................253.000.00--1.00--2.00-------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTCTTG........................................................253.000.00--1.00-1.00-1.00------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTG................................................................193.000.001.00--1.001.00--------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTG................................................................182.000.002.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTA........................................................252.000.001.001.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTAAG......................................................272.000.00-1.001.00----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTTGCCTC....................................................272.000.00--2.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTGG............................................................212.000.00-2.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTCTTG...........................................................222.000.00---1.001.00--------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTAGG........................................................232.000.001.00--1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTCG........................................................252.000.001.00--1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTCG.............................................................202.000.00-2.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTAG.......................................................262.000.001.00---1.00--------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTCAAG......................................................252.000.00---2.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTAG...........................................................222.000.00--1.001.00---------------------
................................................................................................................................................................................................................................GCAATGGTGCAATCTCGGCTCACT..2402.002.00-------2.00-----------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTG..........................................................2561.330.170.50---0.83--------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTGG.......................................................2641.2514.750.750.50-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTATTG........................................................231.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTATA........................................................231.000.00------1.00------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTCGG........................................................241.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTCCAG.....................................................281.000.00--1.00----------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTTATTT.....................................................271.000.00---1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTCGG............................................................211.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTTGTGGG....................................................271.000.00-----1.00-------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTCAAT.......................................................251.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTCTAT.......................................................241.000.00----1.00--------------------
................................................................................................................................................................................................TGAGACAGAGTGAGACTCTCTC....................................221.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTAAG...........................................................221.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTGT..........................................................231.000.00-----1.00-------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTTGG........................................................271.000.001.00------------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTCTG...............................................................201.000.00----1.00--------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTTTA..........................................................241.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTACC......................................................271.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTAA.......................................................261.000.00--1.00----------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTTGAC......................................................261.000.00--1.00----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTAGG.........................................................221.000.001.00------------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTATG.........................................................221.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTCAAG.......................................................261.000.001.00------------------------
......................................................................................................................................................................................................................................GTGCAATCTCGGCTCACTCGGC221.000.00-----1.00-------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTTATT......................................................261.000.00------1.00------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTATTC.........................................................251.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTAG..........................................................231.000.00-1.00-----------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTCCG.......................................................251.000.00---1.00---------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTTCCTG......................................................291.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTCCG..........................................................231.000.00---1.00---------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTAT........................................................241.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTCCT.......................................................241.000.00---1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTACAG.........................................................241.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTACG...........................................................221.000.00---1.00---------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTGTG........................................................241.000.001.00------------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTCTGG......................................................251.000.00-----1.00-------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTTGGGG.....................................................261.000.00--1.00----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTACG........................................................231.000.00----1.00--------------------
..................................................................................................................................................................................................................ACCTAGGCTGGACTGCAATGGTGCAATACC..........301.000.00-------------------1.00-----
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTTCGGG......................................................251.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTCG............................................................211.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTGAGG.......................................................261.000.00--1.00----------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTTCG.......................................................251.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTAG.........................................................241.000.00-1.00-----------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTAG...........................................................231.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTATT........................................................231.000.00------1.00------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTGGG..........................................................231.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTATTG............................................................211.000.00-1.00-----------------------
............TGGAAGCTTTTGAACAACA...........................................................................................................................................................................................................................191.000.00----------------1.00--------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTGTG.........................................................241.000.001.00------------------------
......................................................................................................................................................................................................................................GTGCAATCTCGGCTCACTGCGATA241.000.00----------1.00--------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTCG...........................................................221.000.001.00------------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTTTTATT.......................................................271.000.00-1.00-----------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTAGT.........................................................221.000.00----1.00--------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTGGA........................................................241.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTATG.............................................................201.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTCG.......................................................261.000.001.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTATG.........................................................241.000.001.00------------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTCAAG.......................................................251.000.00----1.00--------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTGG............................................................231.000.001.00------------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTAT.........................................................231.000.00---1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTATG.......................................................261.000.00---1.00---------------------
....................................................................................................................................................................................................................................TGGTGCAATCTCGGCTCACAAT221.000.00------------1.00------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTAAT........................................................251.000.00-1.00-----------------------
..........................................................................GTGTCCTTAGATGTCCGG..............................................................................................................................................................181.000.00---------1.00---------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTC..........................................................231.000.00----1.00--------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTCT.......................................................261.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTAT........................................................251.000.00----1.00--------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTCG.........................................................241.000.00----1.00--------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTTTTTTATTT.......................................................241.000.00----1.00--------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTAAAG.............................................................201.000.001.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTCGG........................................................251.000.001.00------------------------
...........................................................................................................................................................................ACCCTTTTTTTTTTTGTG.............................................................181.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTCTGG......................................................271.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTCAG.........................................................241.000.001.00------------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTAAAG.......................................................251.000.00---1.00---------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTCGAG........................................................251.000.00--1.00----------------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTGG............................................................221.000.00----1.00--------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTAAT........................................................241.000.001.00------------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTACAA.......................................................251.000.001.00------------------------
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTTTGGG......................................................261.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTGTTG............................................................211.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTCCAG.......................................................261.000.00--1.00----------------------
...........................................................................TGTCCTTAGATGTCCGGG.............................................................................................................................................................181.000.00----------1.00--------------
..............................................................................................TAGCCACTGTTCTCTAGTTCTCTAGG..................................................................................................................................2611.001.00---------------------1.00---
..........................................................................................................................................................................TACCCTTTTTTTTTTTTTTTTCTT........................................................241.000.00-1.00-----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTAGG........................................................251.000.00--1.00----------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTATTG.......................................................261.000.001.00------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTGAG......................................................2740.750.75--0.75----------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTG...........................................................2470.570.290.140.29-0.14---------------------
..........AATGGAAGCTTTTGAAC...............................................................................................................................................................................................................................1720.500.50----------------------0.50--
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTTTTTG........................................................2620.500.500.50------------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTT............................................................2370.290.290.29------------------------
.........................................................................................................................................................................ATACCCTTTTTTTTTTTTTTTTTTGTT......................................................2740.2514.75--0.25----------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTT...........................................................2460.170.170.17------------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTCCTG.......................................................2860.170.17--0.17----------------------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTTTTTTTA..........................................................2560.170.170.17------------------------
..................................................................................................................................................................................................................ACCTAGGCTGGACTGCAATGG...................2170.140.14-----------------------0.14-

Antisense strand
ATAATAATAAAATGGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTAGCCACTGTTCTCTAGTTCTCTAGGTACATTAACTTGGCTAGGCTTCACAACACACCAGTGAGATTGTGTTGATATACCCTTTTTTTTTTTTTTTTTTGAGACAGAGTGAGACTCACCTAGGCTGGACTGCAATGGTGCAATCTCGGCTCACTGC
...........................................................................(((.((((((.(((.....((((((.(((..(((((....))))).)))......)))))))))....(((((((..........))))))).......................)))))))))...................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
...............................................................................................AGCCACTGTTCTCTAGCT......................................................................................................................................... 181.000.00-----------------1.00-------
.......................................................................................................................................................................ATATACCCTTTTTTTTTTAGTT............................................................. 221.000.00-----------1.00-------------
........................................................................................................................................................................TATACCCTTTTTTTTTTTTTTTTTAT........................................................ 261.000.00--------------------1.00----
...................................................................................................................................................................................................................................ATGGTGCAATCTCGGCTCCGC.. 211.000.00-------1.00-----------------
................................................................................................................................CTTGGCTAGGCTTCACCC........................................................................................................ 181.000.00-------------1.00-----------
....TAATAAAATGGAAGCTTAC................................................................................................................................................................................................................................... 191.000.00--------1.00----------------
.....AATAAAATGGAAGCTTTAGT................................................................................................................................................................................................................................. 201.000.00--------1.00----------------
.................................................................................................................................................................................................................ATTGCACCATTGCAGTCCAGCCTAGGTG............. 2811.001.00--1.00----------------------
......AAAAGCTTCCATTTTAT................................................................................................................................................................................................................................... 1770.140.14------0.14------------------
......................................................................................................TAGAGAACTAGAGAAC.................................................................................................................................... 1670.140.14------------------------0.14