ID: uc003azw.2_intron_10_0_chr22_41737151_f.5p
GENE: (11)
chr22:41737101-41737350+


(3)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(15)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(4)
SKIN

Sense strand
ACTCACAGGACCACCGTCCCCCTAGCGGTGCTCAGAAACCAGCCCCCTCGGTGAGTGACTTGAGTGGGGATCCAGGCCTCTCATTCCCTGCTGGGGGTTGTGGGTTCTAGAGTTGGGGAATGAGCCCTCTGCATGGGGTAAGGCACTGCATTCCCCACGGCGGGGCACTCCCAGAGTGGATGGATCAAAGATGATCACCTCGTGCCCTTCCTCACCAAGCCATATGCTGGGCGGGCACACAGAGGGCACC
..........................................................................................((((((((.....(((((...((.((((((((.(((((((....))))...)))....))))))))))...)))))))))))))............................................................................
....................................................................................85.........................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189783SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.........................................................................................GCTGGGGGTTGTGGGTTCGGG............................................................................................................................................2115.001.00-2.00-2.00--------1.00---------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGGG............................................................................................................................................2014.002.001.00-1.00-1.00------1.00----------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGAG............................................................................................................................................2113.001.001.00------1.00--1.00-----------------------------
.........................................................................................GCTGGGGGTTGTGGGTTTGGG............................................................................................................................................213.000.00-2.00-1.00------------------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGGT............................................................................................................................................2013.002.001.00--1.00---1.00--------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGGTT...........................................................................................................................................2212.001.00--1.00-1.00-----------------------------------
..........................................................................................CTGGGGGTTGTGGGTTC...............................................................................................................................................1712.002.00-----------1.00-------------1.00--------------
.........................................................................................GCTGGGGGTTGTGGGTTCTTT............................................................................................................................................212.000.00------1.00---1.00-----------------------------
......................................................................................CCTGCTGGGGGTTGTGCTCC................................................................................................................................................202.000.00-----2.00----------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTC...............................................................................................................................................1811.001.00-1.00--------------------------------------
..................................GAAACCAGCCCCCTCGG.......................................................................................................................................................................................................1711.001.00--------------1.00-------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGG.............................................................................................................................................1911.002.00---------------1.00------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCATG............................................................................................................................................2111.001.00-------1.00--------------------------------
...............................................TCGGTGAGTGACTTGAG..........................................................................................................................................................................................1711.001.00---------------------------1.00------------
.........................................................................................GCTGGGGGTTGTGGGT.................................................................................................................................................1651.001.00--------------0.20--------------------0.80----
................................CAGAAACCAGCCCCCTCGCC......................................................................................................................................................................................................201.000.00-------------------------------1.00--------
.........................................................................................GCTGGGGGTTGTGGGTTCGAGT...........................................................................................................................................2211.001.00-------------1.00--------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGGGG...........................................................................................................................................2211.001.00-------------1.00--------------------------
..........................................................................................CTGGGGGTTGTGGGTCAT..............................................................................................................................................181.000.00------------------------------1.00---------
..........................................................................................CTGGGGGTTGTGGGTTCCGG............................................................................................................................................2011.002.00-1.00--------------------------------------
..........................................................................................CTGGGGGTTGTGGGTTAGGG............................................................................................................................................201.000.00---------1.00------------------------------
.........................................................................................................................................................CCCACGGCGGGGCACGGGT..............................................................................191.000.00---------------------1.00------------------
.......................AGCGGTGCTCAGAAACCAGCCC.............................................................................................................................................................................................................2211.001.00----------------------------------1.00-----
..........................................................................................CTGGGGGTTGTGGGTTTT..............................................................................................................................................181.000.00-----------------------1.00----------------
..........................................................................................CTGGGGGTTGTGGGTTCGAG............................................................................................................................................2011.002.00-1.00--------------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCG..............................................................................................................................................1911.001.00--------------------------------1.00-------
.........................................................................................GCTGGGGGTTGTGGGTTTGGT............................................................................................................................................211.000.00--1.00-------------------------------------
.....................................................................................................................................................................CACTCCCAGAGTGGATGGATCAAAGAT..........................................................2711.001.00--------------------1.00-------------------
............................................................................................GGGGGTTGTGGGTTCTATTGC.........................................................................................................................................211.000.00----------------------1.00-----------------
..........................................................................................CTGGGGGTTGTGGGTTGGTG............................................................................................................................................201.000.00----1.00-----------------------------------
............................................................................................GGGGGTTGTGGGTTCTTCCC..........................................................................................................................................201.000.00----------------------------1.00-----------
........................................................................................TGCTGGGGGTTGTGGGT.................................................................................................................................................1711.001.00--1.00-------------------------------------
...........................................................................................TGGGGGTTGTGGGTTCTGG............................................................................................................................................191.000.00--------1.00-------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTTCTG............................................................................................................................................211.000.001.00---------------------------------------
...........................................................................................TGGGGGTTGTGGGTTGGGG............................................................................................................................................191.000.00----------------1.00-----------------------
..TCACAGGACCACCGTCCCCCTAGCGGTGCCC.........................................................................................................................................................................................................................311.000.00-----1.00----------------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGGGT...........................................................................................................................................2111.002.00--1.00-------------------------------------
.........ACCACCGTCCCCCTATA................................................................................................................................................................................................................................171.000.00---------1.00------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTAT..............................................................................................................................................191.000.00---------------------------------1.00------
.........................................................................................GCTGGGGGTTGTGGGTTTATG............................................................................................................................................211.000.00------------1.00---------------------------
..........................................................................................CTGGGGGTTGTGGGTTCTGT............................................................................................................................................201.000.00----1.00-----------------------------------
...............................TCAGAAACCAGCCCCCTCGCCAG....................................................................................................................................................................................................231.000.00------------------1.00---------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGTT............................................................................................................................................2111.001.00---1.00------------------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGGTC...........................................................................................................................................2111.002.001.00---------------------------------------
....................................AACCAGCCCCCTCGGTGAGTGACTTGAGTGG.......................................................................................................................................................................................3111.001.00-----------------1.00----------------------
.................................AGAAACCAGCCCCCTCGCCA.....................................................................................................................................................................................................201.000.00-----------------------------1.00----------
..........................................................................................CTGGGGGTTGTGGGTTTGGG............................................................................................................................................201.000.001.00---------------------------------------
...........................................................................................TGGGGGTTGTGGGTTCTTG............................................................................................................................................191.000.00--------1.00-------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGGGT...........................................................................................................................................2211.001.00------1.00---------------------------------
.........................................................................................GCTGGGGGTTGTGGGTTCGTC............................................................................................................................................2111.001.001.00---------------------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGT.............................................................................................................................................1911.002.00------1.00---------------------------------
..........................................................................................CTGGGGGTTGTGGGTTCGTC............................................................................................................................................2011.002.00------1.00---------------------------------
............................................................................................GGGGGTTGTGGGTTC...............................................................................................................................................1580.380.38-----------------0.12--------------------0.120.12
............................................................................................GGGGGTTGTGGGTTCGGG............................................................................................................................................1880.380.38--------0.12------0.120.12-----------------------
...........................................................................................TGGGGGTTGTGGGTTCGGG............................................................................................................................................1930.330.33----0.33-----------------------------------
...........................................................................................TGGGGGTTGTGGGTTC...............................................................................................................................................1630.330.33------------------------------------0.33---
...........................................................................................TGGGGGTTGTGGGTTCGTCT...........................................................................................................................................2030.330.33-------------------------------------0.33--

Antisense strand
ACTCACAGGACCACCGTCCCCCTAGCGGTGCTCAGAAACCAGCCCCCTCGGTGAGTGACTTGAGTGGGGATCCAGGCCTCTCATTCCCTGCTGGGGGTTGTGGGTTCTAGAGTTGGGGAATGAGCCCTCTGCATGGGGTAAGGCACTGCATTCCCCACGGCGGGGCACTCCCAGAGTGGATGGATCAAAGATGATCACCTCGTGCCCTTCCTCACCAAGCCATATGCTGGGCGGGCACACAGAGGGCACC
..........................................................................................((((((((.....(((((...((.((((((((.(((((((....))))...)))....))))))))))...)))))))))))))............................................................................
....................................................................................85.........................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189783SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.................................AGAAACCAGCCCCCTATA....................................................................................................................................................................................................... 181.000.00------------------------1.00---------------
....................................................GAGTGACTTGAGTGGGGATC.................................................................................................................................................................................. 201.000.00-------------------1.00--------------------
......................................................................................CCTGCTGGGGGTTGTCAA.................................................................................................................................................. 181.000.00--------------------------1.00-------------