ID: uc003azh.2_intron_8_0_chr22_41320487_f.5p
GENE: (9)
chr22:41320437-41320686+


(2)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(2)
BREAST
(15)
CELL-LINE
(4)
CERVIX
(5)
HEART
(1)
LIVER
(1)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
GCCCCGTTCCCTCCCTCTGCAGCCTGGGATGGTAATCACAATTGAGCCCGGTAAGGAGAGGTGTTACAATAGTAGTATGAGGTAAATGTTTGTTTGTTTGTTTGTTTTTGAGATGGAGTTTTGCTCTTTCGCCCAGGCTGGAGTGAAGTGGTGTGATCTTCACTCACTGCAACCTCCGCCCCCCAGGTTCAGCAATTCTCCTGCCTCAACCTCCTGAGTATCTGGGATTACAGGTGTCGGCCACCACGCC
..................................................................................................................((((..((((......((....))..((((((((.........))))))))...)))).)))).........................................................................
.................................................................................................................114.............................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR343334SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040019(GSM532904)
G701T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
...........................................................................................................................................................ATCTTCACTCACTGCATAG............................................................................1918.000.00--15.00--1.00-----1.00-------------------------------1.00--
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCTGGG................................................................2512.000.0010.002.00--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCGGGC..............................................................275.000.005.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCGGGG...............................................................265.000.005.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCGGG.................................................................244.000.003.001.00--------------------------------------------
...........................................................................................................................................................ATCTTCACTCACTGCAACCTTC.........................................................................223.000.00--3.00-------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCTGG.................................................................242.000.002.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCGGGT................................................................252.000.002.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCAGG..................................................................232.000.002.00---------------------------------------------
......................................................................................................................TTTTGCTCTTTCGCCCAGGAGTG.............................................................................................................232.000.00-2.00--------------------------------------------
.......................................................................................................................TTTGCTCTTTCGCCCAGGCTGGAGCGA........................................................................................................272.000.002.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCGGGC...............................................................262.000.002.00---------------------------------------------
...........................................................................................................................................................ATCTTCACTCACTGCATA.............................................................................182.000.00-----1.00-----1.00----------------------------------
.....................................................................................................................................................................................................................CTGAGTATCTGGGATTACAG.................2001.001.00-----------------------------------1.00----------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCGGG..................................................................231.000.001.00---------------------------------------------
...........................................................................................................................................................................ACCTCCGCCCCCCAGGTTCAGGCT.......................................................241.000.001.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCTCTG.................................................................241.000.00-1.00--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCTG..................................................................231.000.001.00---------------------------------------------
.............................................................................TGAGGTAAATGTTTGTAAAG.........................................................................................................................................................201.000.00--------1.00-------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCGGCT.................................................................241.000.001.00---------------------------------------------
......................................................................................................................TTTTGCTCTTTCGCCCAGGCTGGAGCGA........................................................................................................281.000.001.00---------------------------------------------
............................................................................................................TGAGATGGAGTTTTGAAA............................................................................................................................181.000.00-------------------------------1.00--------------
..................................................................................................................................................................CTCACTGCAACCTCCGCCCCCCAGGCTG............................................................281.000.001.00---------------------------------------------
.............................................................................................................................CTTTCGCCCAGGCTGGAGTGAAGTGGCCTG...............................................................................................301.000.001.00---------------------------------------------
..................................................................................................................................................................CTCACTGCAACCTCCGCCCCCCACG...............................................................251.000.00-1.00--------------------------------------------
.....................................................................................ATGTTTGTTTGTTTGTTTGTTTCAC............................................................................................................................................251.000.001.00---------------------------------------------
......................................................................................................................................AGGCTGGAGTGAAGTGACGA................................................................................................201.000.00-1.00--------------------------------------------
................................TAATCACAATTGAGCCCGGCAT....................................................................................................................................................................................................221.000.00-----1.00----------------------------------------
.....................................................................................................................................................................ACTGCAACCTCCGCCCCCCAGGGTCA...........................................................261.000.001.00---------------------------------------------
..............................................................................................................................................................................................................................TGGGATTACAGGTGTCGGCCAAA.....231.000.00---------------------1.00------------------------
....................................................................................................................................................................................................TCTCCTGCCTCAACCTCCTCGGT...............................231.000.001.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGG...............................................................2651.001.000.800.20--------------------------------------------
.....................................................................................ATGTTTGTTTGTTTGTTTCGGG...............................................................................................................................................221.000.00-1.00--------------------------------------------
.....................................................................................................................................................................ACTGCAACCTCCGCCCCCCAGGCTCC...........................................................261.000.001.00---------------------------------------------
....................................................................................................................AGTTTTGCTCTTTCGCCCAGGCTGGAGGA.........................................................................................................291.000.00-1.00--------------------------------------------
..................................................................................................................................................................CTCACTGCAACCTCCGCCCCCCAGGTTAC...........................................................291.000.001.00---------------------------------------------
....................................................................................................................AGTTTTGCTCTTTCGCCCAGGGGAG.............................................................................................................251.000.001.00---------------------------------------------
....................................................................................................................................CCAGGCTGGAGTGAAGTGGTTTA...............................................................................................231.000.00----------------------------------------1.00-----
.....................................................................................ATGTTTGTTTGTTTGTTTGTTCTC.............................................................................................................................................241.000.00-1.00--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCGGGG................................................................251.000.001.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCTAGG................................................................251.000.001.00---------------------------------------------
..................................................................................................................................GCCCAGGCTGGAGTGAAGTGACCG................................................................................................241.000.00-----------------------------------------1.00----
.....................................................................................................................................CAGGCTGGAGTGAAGTGGTCGA...............................................................................................221.000.00-----------------1.00----------------------------
..................................................................................................................................................................CTCACTGCAACCTCCGCCCCCCAGGCCG............................................................281.000.001.00---------------------------------------------
.....................................................................................................................................................................ACTGCAACCTCCGCCCCCCATGC..............................................................231.000.001.00---------------------------------------------
................................................................................................................................TCGCCCAGGCTGGAGTGAAGCGAC..................................................................................................241.000.001.00---------------------------------------------
.......................................................................................................................................................................TGCAACCTCCGCCCCCCAAGCG.............................................................221.000.001.00---------------------------------------------
......................................................................................................................TTTTGCTCTTTCGCCCAGGCCGG.............................................................................................................231.000.00-1.00--------------------------------------------
....................................................................................................TTTGTTTTTGAGATGGAGCG..................................................................................................................................201.000.00----------------1.00-----------------------------
..........................................................................................TGTTTGTTTGTTTGTTTTTGAGAAGGA.....................................................................................................................................271.000.00-------1.00--------------------------------------
........................................................................................................................TTGCTCTTTCGCCCAGGCTGG.............................................................................................................2101.001.00-------------------1.00--------------------------
..........................................................................................................................................................................................................................TATCTGGGATTACAGGTTTT............201.000.001.00---------------------------------------------
.......................................................................................................GTTTTTGAGATGGAGCTCG................................................................................................................................191.000.00------------------------------------------1.00---
.........................................................................................................................TGCTCTTTCGCCCAGTCAG..............................................................................................................191.000.001.00---------------------------------------------
........................................................................................................................TTGCTCTTTCGCCCAGGCTGGATC..........................................................................................................241.000.00----1.00-----------------------------------------
.............................................................................TGAGGTAAATGTTTGTTTGGTT.......................................................................................................................................................221.000.00-------------1.00--------------------------------
.....................................................................................................................................CAGGCTGGAGTGAAGTGGTGTGTTT............................................................................................251.000.00--------------------1.00-------------------------
....................................................................................AATGTTTGTTTGTTTGTTTGAAC...............................................................................................................................................231.000.00-1.00--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCAGGC................................................................251.000.001.00---------------------------------------------
...............................GTAATCACAATTGAGCCCGGT......................................................................................................................................................................................................2111.001.00--------------------------------------1.00-------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCGG..................................................................231.000.001.00---------------------------------------------
.........................................................................................................................TGCTCTTTCGCCCAGGCTGGAGTGAAGCAGC..................................................................................................311.000.001.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCGGC................................................................251.000.001.00---------------------------------------------
.....................................................................................ATGTTTGTTTGTTTGTTTGTTCACC............................................................................................................................................251.000.001.00---------------------------------------------
................................................................................................................ATGGAGTTTTGCTCTTTCGCCCAGGCCGG.............................................................................................................291.000.00-1.00--------------------------------------------
...................................................................AATAGTAGTATGAGGTAAATGTTTGTTT...........................................................................................................................................................2811.001.00----------------------------1.00-----------------
...................................................................................................................................CCCAGGCTGGAGTGAAGTGGTGTGATCCCG.........................................................................................301.000.00----------------1.00-----------------------------
.....................................................................................ATGTTTGTTTGTTTGTTCGAG................................................................................................................................................211.000.00-1.00--------------------------------------------
........................................................................................................................TTGCTCTTTCGCCCAGGCTGGAGCGA........................................................................................................261.000.001.00---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGGTT.............................................................2840.500.500.50---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGGT..............................................................2740.500.500.250.25--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGGCTT............................................................2950.201.00-0.20--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGGC..............................................................2750.201.000.20---------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAGGCTC............................................................2950.201.000.20---------------------------------------------
....................................................................................AATGTTTGTTTGTTTGTTTGTTTTTGAG..........................................................................................................................................2860.170.17-0.17--------------------------------------------
.................................................................................................................................................................ACTCACTGCAACCTCCGCCCCCCAG................................................................2570.140.14-0.14--------------------------------------------

Antisense strand
GCCCCGTTCCCTCCCTCTGCAGCCTGGGATGGTAATCACAATTGAGCCCGGTAAGGAGAGGTGTTACAATAGTAGTATGAGGTAAATGTTTGTTTGTTTGTTTGTTTTTGAGATGGAGTTTTGCTCTTTCGCCCAGGCTGGAGTGAAGTGGTGTGATCTTCACTCACTGCAACCTCCGCCCCCCAGGTTCAGCAATTCTCCTGCCTCAACCTCCTGAGTATCTGGGATTACAGGTGTCGGCCACCACGCC
..................................................................................................................((((..((((......((....))..((((((((.........))))))))...)))).)))).........................................................................
.................................................................................................................114.............................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR343334SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040019(GSM532904)
G701T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
..........................................................................................................................................................................................GTTCAGCAATTCTCCTGTCTG........................................... 2110.000.00---3.00--------2.00-1.002.00-----------1.00---------1.00--------
..........................................................................................................................................................................................GTTCAGCAATTCTCCTCTG............................................. 194.000.00---2.00----------1.00---------------------1.00---------
..........................................................................................................................................................................................GTTCAGCAATTCTCCTGCCTTCTG........................................ 243.000.00------2.00--1.00------------------------------------
.........................................................................................................................................................................................................TGCCTCAACCTCCTGAGTCGGG........................... 223.000.00----3.00-----------------------------------------
.................................................................................................................................................................................GCCCCCCAGGTTCAGCAAAGCA................................................... 221.000.00-------------1.00--------------------------------
...................................................................................................................................................................................................TTCTCCTGCCTCAACCTCCTGAGAA.............................. 251.000.00----------1.00-----------------------------------
....................................................................................................................................................................................................................CCTGAGTATCTGGGATTACAGGCGG............. 251.000.00----------------------1.00-----------------------
.................................................................................................................................................................................................AATTCTCCTGCCTCAATTC...................................... 191.000.00-1.00--------------------------------------------
............................................................................................................................CCAGCCTGGGCGAAAGA............................................................................................................. 1701.001.00-------1.00--------------------------------------
.......................................................................................................................................GGCTGGAGTGAAGTGGTGTGGGT............................................................................................ 231.000.001.00---------------------------------------------
..........................................................................................................................GCTCTTTCGCCCAGGCTCTG............................................................................................................ 201.000.00----------1.00-----------------------------------
..........................................................................................................................................................................................GTTCAGCAATTCTCCTGCCTCTG......................................... 231.000.00------------------1.00---------------------------
...............................................................................................................................................................................TGAACCTGGGGGGCGG........................................................... 1601.001.00------------------------1.00---------------------
...............................................................................................CTCCATCTCAAAAACAAACAAAC.................................................................................................................................... 2301.001.00---------------------------------------1.00------
.................................................................................................................................................................................................AATTCTCCTGCCTCAATAG...................................... 191.000.00--------1.00-------------------------------------
.................................................................................................................................................................................................AATTCTCCTGCCTCAACCTG..................................... 201.000.00--------------------------1.00-------------------
.........................................................................................................................................................................CAACCTCCGCCCCCCAGGTTAAGC......................................................... 241.000.001.00---------------------------------------------
....................................................................................................................................................................CACTGCAACCTCCGCCCCCCAGGTTCATAG........................................................ 301.000.00-------------------------1.00--------------------
..........................................................................................................................................................................AACCTCCGCCCCCCAGTACT............................................................ 201.000.00--------------------------------1.00-------------
.............................................................................................................................................................................................CAGCAATTCTCCTGCCTCAACGT...................................... 231.000.00------------------------------1.00---------------
..................................................................................................................................................................CTCACTGCAACCTCCGCCCCCCAGGTTGTG.......................................................... 301.000.00-1.00--------------------------------------------
.CCCCGTTCCCTCCCTGCG....................................................................................................................................................................................................................................... 181.000.00-----------------------1.00----------------------
.......................................................................................................................................................................................................CCTGCCTCAACCTCCTGCGG............................... 201.000.00-----------------------------1.00----------------
.................................................................................................................................................................................................AATTCTCCTGCCTCAACCTCCTGAGTCTG............................ 291.000.00------1.00---------------------------------------
.......................................................................................................................................................................TGCAACCTCCGCCCCCCTA................................................................ 191.000.00--------1.00-------------------------------------
.................................................................................................................................................................................................AATTCTCCTGCCTCAACCTCCTC.................................. 231.000.00-1.00--------------------------------------------
.......................................................................................................................................................................................................CTCAGGAGGTTGAGGCAGG................................ 1901.001.00----------------------------------1.00-----------
..........................................................................................................................................................................................GTTCAGCAATTCTCCTGCCTCATCTG...................................... 261.000.00---------1.00------------------------------------
........................................................................................................................................................................GCAACCTCCGCCCCCCAGGTTGC........................................................... 231.000.001.00---------------------------------------------
......................................................................................................................................................................CTGCAACCTCCGCCCCCCAGGTCC............................................................ 241.000.001.00---------------------------------------------
.......................................................................................................................................GGCTGGAGTGAAGTGGTGTGGGC............................................................................................ 231.000.001.00---------------------------------------------
.........................................................................................................................TGCTCTTTCGCCCAGCGA............................................................................................................... 181.000.00---------------------------------1.00------------
....................................................................................................................................................................................................................AATCCCAGATACTCAGG..................... 1701.001.00-------1.00--------------------------------------
...............CCATCCCAGGCTGCAGA.......................................................................................................................................................................................................................... 1720.500.50--------------------------------------------0.50-
...........TCCCAGGCTGCAGAGGGA............................................................................................................................................................................................................................. 1820.500.50---------------------------------------------0.50