ID: uc003ayv.1_intron_7_0_chr22_40820386_r.3p
GENE: MKL1(4)
chr22:40820336-40820585-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
B-CELL 		(3)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(16)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCTTGCAGGGTCATTATGATGACCAGAGCTTTTTTGGACCAAGAAAGCAGATTGGCTGCTAGTCTCCTCGGCTTGCCTGCCTCACGGGGCATGTGGGCTGTGGGCCAGGCACTCTGCCTGTGGCCTGCGAGCCAGGCCTGTCCCTGCTCATCTGTTCCCTGGGCTGGAAGTGGAATCTCACACCAGCTTTGGGTTTCAGTGGGCCAGGTGAACTATCCCAAAGTAGCAGACAGCTCTTCCTTCGATGAG
..................................................................................((((((((((.((.(((((((((((((((.....))))..))))))).))))..)).)))))).(((((.........))))).....))))............................................................................
..................................................................................83............................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAGTG.............................................................................23111.0011.001.002.00---2.00--2.00-----1.001.00------------1.001.00---------------
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAGT..............................................................................2219.009.002.001.00----1.001.00-1.00---1.00-------1.00----------------1.00------
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAGTGT............................................................................2419.0011.001.00-3.001.00---------------1.00------1.00----1.00-------1.00-----
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAG...............................................................................2115.005.00-1.001.00-------1.00------------------------1.00-----1.00---
.........................................................................................................................................................TGTTCCCTGGGCTGGAAGT..............................................................................1913.003.00----3.00----------------------------------------
..........................................................................................................................................................GTTCCCTGGGCTGGAAGTGGAT..........................................................................223.000.003.00--------------------------------------------
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAGTGA............................................................................2412.0011.00------1.00---------1.00----------------------------
.......................................................................................GGGCATGTGGGCTGTGGGCCAGGCA..........................................................................................................................................2511.001.00----------------------------------------1.00----
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAT................................................................................201.000.00---1.00-----------------------------------------
............................................................................................................................................................TCCCTGGGCTGGAAGTGGAAT.........................................................................2111.001.00------------------------------------1.00--------
...............................................................................................GGGCTGTGGGCCAGGCGCTC.......................................................................................................................................201.000.00------------------------1.00--------------------
..........................................................................................................................................................GTTCCCTGGGCTGGAAGTGG............................................................................2011.001.00------------1.00--------------------------------
..............................................................................................TGGGCTGTGGGCCAGGCACT........................................................................................................................................2011.001.00---------------------------1.00-----------------
......................................................................................................................................................ATCTGTTCCCTGGGCTGGAAT...............................................................................211.000.00-----------1.00---------------------------------
..........................................................................................................................................................GTTCCCTGGGCTGGAAGTGGAAT.........................................................................2311.001.00-----------------1.00---------------------------
.............................................................................................................................................................................................................................AAGTAGCAGACAGCTCTTCCTT.......2211.001.00----------------------------------1.00----------
............................................................................................................................................................TCCCTGGGCTGGAAGTGGAA..........................................................................2011.001.00-----------------------1.00---------------------
.......................................................................................GGGCATGTGGGCTGTGCTC................................................................................................................................................191.000.00--------------------1.00------------------------
.................................................................................................................................................................................CTCACACCAGCTTTGGGTT......................................................1911.001.00--------------------------------1.00------------
..............................................................................................................................................................................................................................AGTAGCAGACAGCTCTTC..........1811.001.00---1.00-----------------------------------------
............................................................................................................................................................................................................................AAAGTAGCAGACAGCTCTTCC.........2111.001.00------------------------------------------1.00--
..............................TTTTTTGGACCAAGAAAGCAG.......................................................................................................................................................................................................2111.001.00-----1.00---------------------------------------
.....................................................................................................................................................................................CACCAGCTTTGGGTTTCAGAA................................................211.000.00------------------------------1.00--------------
........................................................................................................................................................CTGTTCCCTGGGCTGGAAGT..............................................................................2011.001.00-------------------------1.00-------------------
........................................CAAGAAAGCAGATTGGCT................................................................................................................................................................................................1811.001.00-------------------------------------1.00-------
................................................................................................................................................................................................................GTGAACTATCCCAAAGTAGCAGACA.................2511.001.00---------------------------------1.00-----------
.....................................................................................................................................................................................CACCAGCTTTGGGTTTCAGAAG...............................................221.000.00------------------1.00--------------------------
................................................................................................................................................................TGGGCTGGAAGTGGAA..........................................................................1670.140.14--------------------------------------------0.14

Antisense strand
CTCTTGCAGGGTCATTATGATGACCAGAGCTTTTTTGGACCAAGAAAGCAGATTGGCTGCTAGTCTCCTCGGCTTGCCTGCCTCACGGGGCATGTGGGCTGTGGGCCAGGCACTCTGCCTGTGGCCTGCGAGCCAGGCCTGTCCCTGCTCATCTGTTCCCTGGGCTGGAAGTGGAATCTCACACCAGCTTTGGGTTTCAGTGGGCCAGGTGAACTATCCCAAAGTAGCAGACAGCTCTTCCTTCGATGAG
..................................................................................((((((((((.((.(((((((((((((((.....))))..))))))).))))..)).)))))).(((((.........))))).....))))............................................................................
..................................................................................83............................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
................................................................................................................................................................................TCTCACACCAGCTTTGGGA....................................................... 191.000.00----------------------1.00----------------------
................................................................................................................................................................................TCTCACACCAGCTTTGGAA....................................................... 191.000.00-------1.00-------------------------------------
....................................................................................................................................AGCAGGGACAGGCCTGG..................................................................................................... 1750.200.20-------------------------------------------0.20-