ID: uc003ayu.1_intron_18_0_chr22_40805023_f
GENE: SGSM3(19)
chr22:40804973-40805303+


(1)
AGO2.ip
(1)
BRAIN
(4)
BREAST
(8)
CELL-LINE
(3)
HEART
(4)
LIVER
(2)
OTHER
(1)
RRP40.ip
(13)
SKIN
(1)
XRN.ip

Sense strand
CATGCACAAATGGATGTGAAGCTCCGCTCACTGATCTGCGTGGGGCTCAAGTGAGTGTGGAAAAGGGGTTGGAGGAGAGCCCTGGAGTGGGGGGACCCAGCCCAGCATCAGGGGGGGTCCTTACAGGGAACCCTAAAGGACAAAGAACCTCAGGGGCTCAGGTCCTTCCCCAAAGAGGGTGGTCTGGGAGCTGCTGAGAGACAGGTCAGAGGCTTCCACCGTGGCTGCAGCCAGAAGGGCCTGGAGCTGCCCCTGCTCCCCACTCCTGGCCATGTCCCCAGTGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCA
................................................................((((((.........(((((......((((((((..(((.......))).)))))))).)))))))))))..............(((((.(((((.((.((..(((......))).)).))..))))).))))).....................................................................................................................................
........................................................57................................................................................................................................................203..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................TGGTCTGGGAGCTGCTGAGA....................................................................................................................................2018.008.008.00-----------------------------------
.............................................................AAAGGGGTTGGAGGACATC...........................................................................................................................................................................................................................................................197.000.007.00-----------------------------------
............................................................AAAAGGGGTTGGAGGACATC...........................................................................................................................................................................................................................................................205.000.005.00-----------------------------------
......................................................................................................................................AAAGGACAAAGAACCTCAGGGG...............................................................................................................................................................................2213.003.003.00-----------------------------------
........................................................................................................................................................................CCCAAAGAGGGTGGTAAAC................................................................................................................................................193.000.00----1.00------------1.00------------1.00-----
.......................................................................................................................................................................................CTGGGAGCTGCTGAGAGACAG...............................................................................................................................2112.002.00-2.00----------------------------------
.....................CTCCGCTCACTGATCTGCGTGGGGC.............................................................................................................................................................................................................................................................................................2511.001.00------------------------1.00-----------
..........................................................................................................................................................................................................................................................................................................TGTGGCTGGAGGTGCTCTGT.............2011.001.00-1.00----------------------------------
..........................................................................................................................ACAGGGAACCCTAAAGGACAAAGAAC.......................................................................................................................................................................................2611.001.00---1.00--------------------------------
.....................................................................................................................................TAAAGGACAAAGAACTCTG...................................................................................................................................................................................191.000.00--------1.00---------------------------
........................................................................................................................................................................................TGGGAGCTGCTGAGAGTCG................................................................................................................................191.000.00----------------------------1.00-------
.........................................................................................................................................................................................................................................GAAGGGCCTGGAGCTGGC................................................................................181.000.00------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................AGTGAGCAGGTGCTGCACCTGTGGCTGGAGGC....................321.000.00--------------------1.00---------------
........AATGGATGTGAAGCTCTG.................................................................................................................................................................................................................................................................................................................181.000.00----1.00-------------------------------
...............................TGATCTGCGTGGGGCTCAAGTGAGTGTGGAAAAGG.........................................................................................................................................................................................................................................................................3511.001.00---------1.00--------------------------
.....................................................................................................................................TAAAGGACAAAGAACACTG...................................................................................................................................................................................191.000.00----1.00-------------------------------
......................................................................................................................CCTTACAGGGAACCCTAAAGGA...............................................................................................................................................................................................2211.001.00-------------------1.00----------------
................................................................................................................................................................................GGGTGGTCTGGGAGCTGCTGAGA....................................................................................................................................2311.001.00-------------------------1.00----------
.....................................................................................................CCAGCATCAGGGGGGGG.....................................................................................................................................................................................................................171.000.00------1.00-----------------------------
............................................................................................................................................................................AAGAGGGTGGTCTGGGAGCTGCT........................................................................................................................................2311.001.00-----------------------------1.00------
......................................................................................................................................................................................TCTGGGAGCTGCTGAGAGAC.................................................................................................................................2011.001.00---------------1.00--------------------
..................................................GTGAGTGTGGAAAAGGGG.......................................................................................................................................................................................................................................................................1811.001.00----------------------1.00-------------
.............................................................................................................................GGGAACCCTAAAGGACAAAGAACC......................................................................................................................................................................................2411.001.00---1.00--------------------------------
...................................................................................................................................................................................................................................................................................................CTGCACCTGTGGCTGGAG......................1811.001.00-------1.00----------------------------
...............................................................................................................................................................................AGGGTGGTCTGGGAGCTGCTGAGAG...................................................................................................................................2511.001.00--------------------------1.00---------
..........................................................................................................................................................................................................................................................................................................TGTGGCTGGAGGTGCTCTGA.............2011.001.00-1.00----------------------------------
....................................................................................................................................................................................................................CTTCCACCGTGGCTGCAGCCAGA................................................................................................2311.001.00-----1.00------------------------------
.................................................................................................................................................................................GGTGGTCTGGGAGCTGCTGAGCGA..................................................................................................................................241.000.00-----1.00------------------------------
...............................................................................................................................................................................AGGGTGGTCTGGGAGCTGCCGAG.....................................................................................................................................231.000.00---------------------1.00--------------
....................................TGCGTGGGGCTCAAGTGAGTGTGGAAAAGG.........................................................................................................................................................................................................................................................................3011.001.00------------1.00-----------------------
.......................................................TGTGGAAAAGGGGTTGGAGGAGA.............................................................................................................................................................................................................................................................2311.001.00---------------------------1.00--------
...........................................................................................................................................................................AAAGAGGGTGGTCTGGCTGT............................................................................................................................................201.000.00-----------1.00------------------------
..........................................GGGCTCAAGTGAGTGTGGAA.............................................................................................................................................................................................................................................................................2011.001.00----------1.00-------------------------
...............................................................AGGGGTTGGAGGAGATGTA.........................................................................................................................................................................................................................................................191.000.00-------------1.00----------------------
..........................................................................................................................................................................................................................................................................................................TGTGGCTGGAGGTGCTCTGTAT...........2211.001.00-1.00----------------------------------
............................................................AAAAGGGGTTGGAGGACA.............................................................................................................................................................................................................................................................181.000.001.00-----------------------------------
...............................................................................................................................................................................AGGGTGGTCTGGGAGCTGCTGA......................................................................................................................................2211.001.00------1.00-----------------------------
..........................................................................................................................................................................................................................................................................................................TGTGGCTGGAGGTGCTCTG..............1911.001.00-1.00----------------------------------
......................................................................................................................................................................................TCTGGGAGCTGCTGAGAGACAGGTCAGAGGC......................................................................................................................3111.001.00---1.00--------------------------------
........................................................................................................................................................................................TGGGAGCTGCTGAGAGTC.................................................................................................................................181.000.00----------------1.00-------------------
...................................................TGAGTGTGGAAAAGGTAAC.....................................................................................................................................................................................................................................................................191.000.00--------------1.00---------------------
.................................ATCTGCGTGGGGCTCA..........................................................................................................................................................................................................................................................................................1620.500.50-------------------------------0.50----
..................................................................................................................................................................................................................GGCTTCCACCGTGGC..........................................................................................................1530.330.33-----0.33------------------------------
...............................................................AGGGGTTGGAGGAGAGC...........................................................................................................................................................................................................................................................1730.330.33--------------------------------0.33---
.......................................................................................................................CTTACAGGGAACCCT.....................................................................................................................................................................................................1540.250.25----------------------------------0.25-
.....................................................................................................................................TAAAGGACAAAGAACC......................................................................................................................................................................................1640.250.25---------------------------------0.25--
....................................................................................................................................CTAAAGGACAAAGAAC.......................................................................................................................................................................................1680.120.12--------0.12---------------------------
....................................................................................................................................CTAAAGGACAAAGAACACTG...................................................................................................................................................................................2080.120.12-----------------------------------0.12

Antisense strand
CATGCACAAATGGATGTGAAGCTCCGCTCACTGATCTGCGTGGGGCTCAAGTGAGTGTGGAAAAGGGGTTGGAGGAGAGCCCTGGAGTGGGGGGACCCAGCCCAGCATCAGGGGGGGTCCTTACAGGGAACCCTAAAGGACAAAGAACCTCAGGGGCTCAGGTCCTTCCCCAAAGAGGGTGGTCTGGGAGCTGCTGAGAGACAGGTCAGAGGCTTCCACCGTGGCTGCAGCCAGAAGGGCCTGGAGCTGCCCCTGCTCCCCACTCCTGGCCATGTCCCCAGTGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCA
................................................................((((((.........(((((......((((((((..(((.......))).)))))))).)))))))))))..............(((((.(((((.((.((..(((......))).)).))..))))).))))).....................................................................................................................................
........................................................57................................................................................................................................................203..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................ATCTGCGTGGGGCTCACTG....................................................................................................................................................................................................................................................................................... 191.000.00--1.00---------------------------------
....................................................................................................................................................................................GGTCTGGGAGCTGCTGTGC.................................................................................................................................... 191.000.00--1.00---------------------------------
.................................ATCTGCGTGGGGCTCATTG....................................................................................................................................................................................................................................................................................... 191.000.00--1.00---------------------------------
..........................................................................................CTGATGCTGGGCTGGGTCCCC............................................................................................................................................................................................................................ 2111.001.00-------1.00----------------------------
.................................................................................................................GGGGTCCTTACAGGGACGC....................................................................................................................................................................................................... 191.000.00-----------------------1.00------------