uc003ayp.3_intron_0_0_chr22_40742716

AATTCCGGACATGGCGGCAGCTGTGGCTGTGGCTGGCGGAGGCCGAGCAGGTAACGGATCCCGGGCTGAGGGGCTGGGCCGGGAGGGACGGGCCCGCCCCAGCACGTGCCGGGCTCTGTTCCGGGCTGGGCTTAGCCACCCCGGAGCTGCGGCCCGGCTATTTTCAGCTGGGTGTTCCCTGTCCTGAGGAGCTGCGGCCCCAGGAAAGCAAGGGCAGGAGATCCGGGAGCCGCCACCTGTTGCCTCACGT
...........................................................................................................((((((((..((((((((.(((......))).))))))))...))))))))............................................................................................
......................................................................................................103...........................................................165...................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR037935(GSM510473)
293cand3. (cell line)

SRR033724(GSM497069)
L428 cell line (L428). (B cell)

SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)

SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)

SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)

SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)

SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)

GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR037937(GSM510475)
293cand2. (cell line)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR029127(GSM416756)
A549. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)

SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)

SRR029130(GSM416759)
DLD2. (cell line)

SRR038857(GSM458540)
D20. (cell line)

SRR040012(GSM532897)
G648N. (cervix)

TAX577738(Rovira)
total RNA. (breast)

SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

TAX577745(Rovira)
total RNA. (breast)

TAX577743(Rovira)
total RNA. (breast)

GSM416733(GSM416733)
HEK293. (cell line)

SRR037931(GSM510469)
293GFP. (cell line)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)

SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)

SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)

SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)

SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)

SRR189784

SRR037936(GSM510474)
293cand1. (cell line)

SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)

SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)

DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)

SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)

DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)

SRR553575(SRX182781)
source: Kidney. (Kidney)

SRR207111(GSM721073)
Whole cell RNA. (cell line)

SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)

SRR189787

SRR029129(GSM416758)
SW480. (cell line)

SRR343333(GSM796036)
KSHV (HHV8). (cell line)

SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)

SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)

SRR189782

SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)

SRR040025(GSM532910)
G613T. (cervix)

SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)

SRR037938(GSM510476)
293Red. (cell line)

SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)

SRR038859(GSM458542)
MM386. (cell line)

SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)

SRR037941(GSM510479)
293DroshaTN. (cell line)

SRR040017(GSM532902)
G645T. (cervix)

TAX577579(Rovira)
total RNA. (breast)

SRR038860(GSM458543)
MM426. (cell line)

SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR029132(GSM416761)
MB-MDA231. (cell line)

SRR037934(GSM510472)
293cand4_rep3. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)

SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189783

TAX577740(Rovira)
total RNA. (breast)

SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

...........................................................................................................GCCGGGCTCTGTTCCGGGCTGG.........................................................................................................................

12.00

1.00

2.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCTAT.........................................................................................

6.00

1.00

...TCCGGACATGGCGGCAGCTG...................................................................................................................................................................................................................................

4.00

.........................................................................................................................................................................................................AGGAAAGCAAGGGCAGGAGAT............................

4.00

...........................................................................................................GCCGGGCTCTGTTCCGGGCTG..........................................................................................................................

4.00

2.00

1.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGGCTAT.........................................................................................

3.00

1.00

...........................................................................................................GCCGGGCTCTGTTCCGGGC............................................................................................................................

3.00

1.00

....CCGGACATGGCGGCATC.....................................................................................................................................................................................................................................

3.00

0.00

3.00

...........................................................................................................GCCGGGCTCTGTTCCGGG.............................................................................................................................

3.00

2.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCTA..........................................................................................

3.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGTT............................................................................................

3.00

1.00

2.00

.......................................................................................................ACGTGCCGGGCTCTGTTCCGGGCT...........................................................................................................................

3.00

2.00

1.00

.....................................................................................................................................................................................TCCTGAGGAGCTGCGGCC...................................................

3.00

..................................................GTAACGGATCCCGGGCTGAGG...................................................................................................................................................................................

2.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGC............................................................................................

2.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGGCT...........................................................................................

2.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGAAA...........................................................................................

2.00

1.00

...........................................................................................................GCCGGGCTCTGTTCCGGGCT...........................................................................................................................

2.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCTTA.........................................................................................

2.00

1.00

.ATTCCGGACATGGCGGCA.......................................................................................................................................................................................................................................

2.00

....................................................................................................................................................................CAGCTGGGTGTTCCCTGTCCTGAGGAGCTGC.......................................................

2.00

0.00

2.00

........................................................................................................................................CACCCCGGAGCTGCGGCCCGGCTATTTTCAGCTGG...............................................................................

2.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCT...........................................................................................

2.00

1.00

.................................................................................................................................................................TTTCAGCTGGGTGTTCCCTG.....................................................................

2.00

..........................................................................................................................................CCCCGGAGCTGCGGCCAAGA............................................................................................

1.00

0.00

1.00

........................................................................................CGGGCCCGCCCCAGCTGCC...............................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCTATT........................................................................................

1.00

................GCAGCTGTGGCTGTGGCTGGCGGGG.................................................................................................................................................................................................................

1.00

0.00

1.00

............................................................CCGGGCTGAGGGGCTCCTG...........................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGCT............................................................................................

1.00

..................................................GTAACGGATCCCGGGCTG......................................................................................................................................................................................

1.00

........................................................................................CGGGCCCGCCCCAGCGGAA...............................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................TGGGCTTAGCCACCCCGGAGCTGC....................................................................................................

1.00

................................................AGGTAACGGATCCCGGGCTGAGGGGCTGG.............................................................................................................................................................................

1.00

.................................................................................................................CTCTGTTCCGGGCTGGGCT......................................................................................................................

1.00

.................................................GGTAACGGATCCCGGGC........................................................................................................................................................................................

1.00

.............................................AGCAGGTAACGGATCCCGGGCTGAGGGGCT...............................................................................................................................................................................

1.00

................................................................................................................................................................................CCCTGTCCTGAGGAGCTG........................................................

1.00

.......................................................................................................................................................................................CTGAGGAGCTGCGGCCCCAGGA.............................................

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGCTAA.........................................................................................

1.00

3.00

1.00

...............................................................................................................................................................................................CTGCGGCCCCAGGAAAGC.........................................

1.00

..................................................GTAACGGATCCCGGGCTGAG....................................................................................................................................................................................

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGT.............................................................................................

1.00

....................................................................AGGGGCTGGGCCGGGAGGGACG................................................................................................................................................................

1.00

.........................................................................................................GTGCCGGGCTCTGTTCCGGG.............................................................................................................................

1.00

...........................TGTGGCTGGCGGAGGGT..............................................................................................................................................................................................................

1.00

0.00

1.00

..TTCCGGACATGGCGGC........................................................................................................................................................................................................................................

1.00

.............................................................................................................CGGGCTCTGTTCCGGGCTGG.........................................................................................................................

1.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGGCTTA.........................................................................................

1.00

2.00

1.00

...TCCGGACATGGCGGCAGGGGC..................................................................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................TTTCAGCTGGGTGTTTGC.......................................................................

1.00

0.00

1.00

......................................................................................................................TTCCGGGCTGGGCTTAG...................................................................................................................

1.00

.........................................................................................................GTGCCGGGCTCTGTTCCGGGCTGTT........................................................................................................................

1.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGA.............................................................................................

1.00

0.00

1.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGGC............................................................................................

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCAATT.............................................................................................

1.00

........................................................................................................................................................CCCGGCTATTTTCAGC..................................................................................

1.00

...........................................................................................................................................CCCGGAGCTGCGGCCCGGCTATTTTCAGCTGGGGG............................................................................

1.00

0.00

1.00

...........................................................................................................GCCGGGCTCTGTTCCGGGCTGT.........................................................................................................................

1.00

4.00

1.00

.........................................................................................................GTGCCGGGCTCTGTTCCGGGCTG..........................................................................................................................

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCG..............................................................................................

1.00

.............................................................................GCCGGGAGGGACGGGAAAC..........................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................GTGCCGGGCTCTGTTCCGGGC............................................................................................................................

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGC.................................................................................................

1.00

...........................................................................................................................................................................GTGTTCCCTGTCCTGAGGAGCTGCG......................................................

1.00

.........................................................................................................................CGGGCTGGGCTTAGCCACCCCGGA.........................................................................................................

1.00

...........................................................................................................GCCGGGCTCTGTTCCGGGCTGTAG.......................................................................................................................

1.00

4.00

1.00

..........................................................................................................................................CCCCGGAGCTGCGGCCCGGCTATT........................................................................................

1.00

...TCCGGACATGGCGGCAGCT....................................................................................................................................................................................................................................

1.00

...................................................................................................................CTGTTCCGGGCTGGGCTTAG...................................................................................................................

1.00

.................................................................................................................................................GCTGCGGCCCGGCTAT.........................................................................................

1.00

.............................................................................................................................................................................GTTCCCTGTCCTGAGGAG...........................................................

1.00

.................................TGGCGGAGGCCGAGCAGG.......................................................................................................................................................................................................

1.00

0.50

.............................................................CGGGCTGAGGGGCTGGGCCGG........................................................................................................................................................................

1.00

.......................................................................................................ACGTGCCGGGCTCTGTTCCGGGC............................................................................................................................

1.00

...............................................................................................................................................................................TCCCTGTCCTGAGGAAAA.........................................................

1.00

0.00

1.00

............................................................CCGGGCTGAGGGGCTAG.............................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGGCCCGGGTT..........................................................................................

1.00

0.00

1.00

.........................................................................................................................................ACCCCGGAGCTGCGG..................................................................................................

0.50

.................................................................................................................................................................................CCTGTCCTGAGGAGCTG........................................................

0.50

..........................................................................................................................................CCCCGGAGCTGCGGC.................................................................................................

0.33

............................................................................................................................................CCGGAGCTGCGGCCCGG.............................................................................................

0.33

.....................................................................................GGACGGGCCCGCCCC......................................................................................................................................................

0.25

.......................................................................................................................................................................................CTGAGGAGCTGCGGC....................................................

0.14