| (1) B-CELL | (1) BRAIN | (1) BREAST | (6) CELL-LINE | (1) CERVIX | (3) LIVER | (1) OTHER | (3) SKIN | (1) XRN.ip |
| TGTCTCCGGTTGGTCCCTGCCCCTCCTCCTTGCTTCATTTCTGCCTCTGTACCGCCATCTCCATCTCCATCTCCCCATCTCCCTCTGCCTCCCTCTCCCCATGTCTCCCTGCTGTCCCCACTCCATGACTCTGCCTCTCTCACCCTTCTGTCCCCTCCATCCCTGTCCCTGTCCCTGTCCTCTCCTCCCGTTGGTCACAGGTGGGCTCCTTCTTCATGATCAACCTGTGCCTCGTTGTCATAGCGACCCA ..............................................................................................................((.(((..........)))...)).............((((..((.....................................))..)))).................................................. ...........................................................60..........................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189783 | SRR343337 | SRR343336 | SRR343334 | SRR343335 | SRR189786 | SRR189784 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR040010(GSM532895) G529N. (cervix) | TAX577746(Rovira) total RNA. (breast) | SRR189787 | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR039619(GSM531982) HBV(+) HCC Tissue Sample 1. (liver) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR189782 | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................CCGTTGGTCACAGGT................................................ | 15 | 4 | 105.00 | 105.00 | 35.50 | 24.50 | 11.50 | 10.50 | 5.50 | 5.50 | 4.25 | 3.25 | 2.50 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 0.75 | - | 0.25 |
| ...........GGTCCCTGCCCCTCCTCCTTGC......................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CTCTCCTCCCGTTGGCTG..................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................CTCCATCTCCCCATCGC......................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................CTCCTTGCTTCATTTCTGCCT............................................................................................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................CTGTCCCCACTCCATCCTA........................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................TCCCCATGTCTCCCTGCAGC....................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................CCCGTTGGTCACAGGT................................................ | 16 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................CTCCTTCTTCATGATCAACCT........................ | 21 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |
| ....................................................CGCCATCTCCATCTC....................................................................................................................................................................................... | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGTCTCCGGTTGGTCCCTGCCCCTCCTCCTTGCTTCATTTCTGCCTCTGTACCGCCATCTCCATCTCCATCTCCCCATCTCCCTCTGCCTCCCTCTCCCCATGTCTCCCTGCTGTCCCCACTCCATGACTCTGCCTCTCTCACCCTTCTGTCCCCTCCATCCCTGTCCCTGTCCCTGTCCTCTCCTCCCGTTGGTCACAGGTGGGCTCCTTCTTCATGATCAACCTGTGCCTCGTTGTCATAGCGACCCA ..............................................................................................................((.(((..........)))...)).............((((..((.....................................))..)))).................................................. ...........................................................60..........................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189783 | SRR343337 | SRR343336 | SRR343334 | SRR343335 | SRR189786 | SRR189784 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR040010(GSM532895) G529N. (cervix) | TAX577746(Rovira) total RNA. (breast) | SRR189787 | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR039619(GSM531982) HBV(+) HCC Tissue Sample 1. (liver) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR189782 | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................TCTTCATGATCAACCTATT..................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................CACCCTTCTGTCCCCTTC............................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ......................................................................................GCCTCCCTCTCCCCATTTA................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ......................................................TGGAGATGGAGATGG..................................................................................................................................................................................... | 15 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GTCCCTGTCCCTGTCCCC.................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...............................................................................CATGGGGAGAGGGAGGCAGAGGGA................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................ATCCCTGTCCCTGTCCCTC......................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ......................................................CCATCTCCATCTCCATCATGT............................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |