ID: uc003avy.3_intron_9_0_chr22_38894579_r.5p
GENE: (3)
chr22:38895205-38895454-


(1)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
LIVER
(4)
OTHER
(5)
SKIN

Sense strand
AGATGTTTGTCCTAAACCCGTGTTTGCCTTCCATCATGCTAACTTCCCACGTAAGTGTTCTTCAATCTAGAACCTTAATTTGTTAAATTGGGTTGAATGGGAGACAAGGGTAGTAGGTTAAACTCTTTGAGCCAGGCTTGGGGTTTTGTTGAAAGGACAAGAGATTGTTTTTATGGTCATCAGTTCTGTTCTAGTATTTAGACTGAGGTTTTGTTTTTGTTTTGTTTTTTTGAGGTTTTTGTCTTTTTCT
...........................................................................................(((........))).......((......(((.(((..(((...)))..)))....)))......))............................................................................................
..........................................................................................91...................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787
......................................................................................................................................................GAAAGGACAAGAGATC....................................................................................1649.000.0049.00--------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTATC........................214.000.00--4.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTCTTG..................274.000.00-3.001.00------------------
..........................................................................................................................................................................................................CTGAGGTTTTGTTTTTGTTTTGTTTTTC....................282.000.00-2.00-------------------
.........................................................................................................................ACTCTTTGAGCCAGGCTTGGGGTTTTGTTGA..................................................................................................3112.002.00-2.00-------------------
...................................................................................................................................................................................................................TGTTTTTGTTTTGTTTTTTTTCCC...............242.000.00-2.00-------------------
.....................................................................................................................................AGGCTTGGGGTTTTGTTGAAAGG..............................................................................................2312.002.00-2.00-------------------
..........................CCTTCCATCATGCTAACTTC............................................................................................................................................................................................................2012.002.00--------1.00-----1.00------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTCGAG................262.000.00-2.00-------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTTTACC...................242.000.00--2.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTGAGG................291.000.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTTGGG...............301.000.00--1.00------------------
................................................................................................................................................................................................AGTATTTAGACTGAGGTTTTGTTTTTGTTTTG..........................3211.001.00--1.00------------------
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGTTTTGTCTT......................251.000.00--1.00------------------
....................................................................................................................................................TTGAAAGGACAAGAGATTGT..................................................................................2011.001.00----1.00----------------
..............................................................................................................................................................................................................GGTTTTGTTTTTGTTTTGTTTTTTTGAG................2811.001.00--1.00------------------
.........................................................................................................................................................................................................ACTGAGGTTTTGTTTTTGTTTTGTTTCG.....................281.000.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGAGGCTT............3311.001.00-1.00-------------------
..................................................................................................................................................................................................................TTGTTTTTGTTTTGTTTTTTTCGTT...............251.000.00-1.00-------------------
..................................................................................................................................................................................................................TTGTTTTTGTTTTGTTTTTTTTGTC...............251.000.00--1.00------------------
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGAG.............................181.000.00-1.00-------------------
...............................CATCATGCTAACTTCCCACA.......................................................................................................................................................................................................201.000.00-------------1.00-------
...............................................................................................AATGGGAGACAAGGGTAGTAGGCTA..................................................................................................................................251.000.00-1.00-------------------
..........................................................................................................................................................................TTATGGTCATCAGTTCTG..............................................................1811.001.00---------------1.00-----
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGTTTTGTTTTTCTG..................291.000.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTCG............................171.000.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGC.................281.000.00--1.00------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTCCC.....................221.000.00--1.00------------------
......................................................................................................................................................................................................................TTTTGTTTTGTTTTTTTGAACGG.............231.000.00-1.00-------------------
.....................................................................................................................................................................................................................TTTTTGTTTTGTTTTTTTGGGC...............221.000.00--1.00------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTTTTC...............271.000.00-1.00-------------------
.........................................................................................................................................................................................................................TGTTTTGTTTTTTTGAGGTTTTTGTCTTC....291.000.00-1.00-------------------
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGTTTTGTTTTTTTGAG................3111.001.00--1.00------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTTCTT...............271.000.00-1.00-------------------
...............................................................................................................................................................................................TAGTATTTAGACTGAGGTTTTG.....................................2211.001.00----------------1.00----
..................................CATGCTAACTTCCCACA.......................................................................................................................................................................................................171.000.00------1.00--------------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTGAGCAG.............281.000.00--1.00------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTTTTTTGAGGTTT............3111.001.00--1.00------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTTTTTTGAGG...............2811.001.00--1.00------------------
.................................................................................................TGGGAGACAAGGGTAGTAGGTTAAACTCTCTG.........................................................................................................................321.000.00-1.00-------------------
.........................................................................................................................................................................................................ACTGAGGTTTTGTTTTTGTTTTGTTTT......................2711.001.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGAGGTC.............3211.001.00--1.00------------------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTTGGC...............261.000.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTAGAG..........................191.000.00--1.00------------------
......................................................................................................................TAAACTCTTTGAGCCAGGCTTGGGG...........................................................................................................2511.001.00-1.00-------------------
.......................................................................................................................AAACTCTTTGAGCCAGGCTTGGGGT..........................................................................................................2511.001.00--1.00------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTCCCG.................251.000.00-1.00-------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTGTTCG..............281.000.00--1.00------------------
.......................................................................................................................................................................................................AGACTGAGGTTTTGTTTTTGTTTTGTTTTCTTG..................331.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTC......................231.000.00-1.00-------------------
..................................................................................................................................................................................................................TTGTTTTTGTTTTGTTTTTTTGCG................241.000.00----1.00----------------
.........................................................................................................................................................................................................ACTGAGGTTTTGTTTTTGTTTCGC.........................241.000.00--1.00------------------
............................TTCCATCATGCTAACTTCCCACAAT.....................................................................................................................................................................................................251.000.00---1.00-----------------
........................................................GTTCTTCAATCTAGAACTCTG.............................................................................................................................................................................211.000.00----------1.00----------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTGCACG..............271.000.00--1.00------------------
......................................................................AACCTTAATTTGTTACG...................................................................................................................................................................171.000.00----1.00----------------
...............................................................................................................................................................................................TAGTATTTAGACTGAGGTT........................................1911.001.00---1.00-----------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTCG..................271.000.00-1.00-------------------
..............................................................................................................................................................................................................GGTTTTGTTTTTGTTTTGTTTCGTT...................251.000.00--1.00------------------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTCTTG...............261.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTCTT....................251.000.00-1.00-------------------
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGTTTTGTTTTTTGAG.................301.000.00--1.00------------------
...........................................................................................................................................................................................................TGAGGTTTTGTTTTTGTTTTGTTCTT.....................261.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTCTT.....................241.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTCCA..........................191.000.00-1.00-------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTCCGC...............271.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTCGAC.......................221.000.00--1.00------------------
..............................................................................................................................................................................................................GGTTTTGTTTTTGTTTTGTTCTGT....................241.000.00-1.00-------------------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTCTCC...............261.000.00--1.00------------------
.......................................................................................................................................................AAAGGACAAGAGATTAAGG................................................................................191.000.00-----------1.00---------
.......................................................................................................................AAACTCTTTGAGCCAGGCTTGGGGC..........................................................................................................251.000.00--1.00------------------
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTCTC.................241.000.00--1.00------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTAGGC...............271.000.00-1.00-------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTTTTTTGAGGCTT............3111.001.00--1.00------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGAGG...............3011.001.00-1.00-------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTGAGGTTTGTC.........331.000.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGAG................2911.001.00--1.00------------------
............................................................................................................................................GGGTTTTGTTGAAAGGACAAGAG.......................................................................................2311.001.00-------1.00-------------
..........................CCTTCCATCATGCTAACTCCC...........................................................................................................................................................................................................211.000.00-----1.00---------------
............TAAACCCGTGTTTGCCTTCCATC.......................................................................................................................................................................................................................2311.001.00---1.00-----------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTGAGG...............2721.001.00-1.00-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTTTGAGGT..............3111.001.00--1.00------------------
......................................................................................................................TAAACTCTTTGAGCCAGGCTTTGGG...........................................................................................................251.000.00-1.00-------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTGAGGC..............2820.501.00--0.50------------------
................................................................................................................................................................................................................TTTTGTTTTTGTTTTGTTTTTTTGAGGT..............2820.500.50--------------------0.50
..................................................................................................................................................TGTTGAAAGGACAAGAGA......................................................................................1820.500.50-------------------0.50-
.................................................................................................................................................................................................................TTTGTTTTTGTTTTGTTTTTTTGAGG...............2630.330.33-0.33-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTC....................2530.330.33-0.33-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTTCT...................2630.330.33-0.33-------------------
.............................................................................................................................................................................................................AGGTTTTGTTTTTGTTTTGTTTTT.....................2430.330.33-0.33-------------------
..................................................................................................................................................................................................................TTGTTTTTGTTTTGTTTTTTTGAGG...............2530.330.33--0.33------------------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGTTTTTTTGAG................2780.120.12--0.12------------------

Antisense strand
AGATGTTTGTCCTAAACCCGTGTTTGCCTTCCATCATGCTAACTTCCCACGTAAGTGTTCTTCAATCTAGAACCTTAATTTGTTAAATTGGGTTGAATGGGAGACAAGGGTAGTAGGTTAAACTCTTTGAGCCAGGCTTGGGGTTTTGTTGAAAGGACAAGAGATTGTTTTTATGGTCATCAGTTCTGTTCTAGTATTTAGACTGAGGTTTTGTTTTTGTTTTGTTTTTTTGAGGTTTTTGTCTTTTTCT
...........................................................................................(((........))).......((......(((.(((..(((...)))..)))....)))......))............................................................................................
..........................................................................................91...................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787
.....................................................................................................................................................................................................................................TTGAGGTTTTTGTCTTTG... 181.000.00-----1.00---------------
........................................................GTTCTTCAATCTAGATCTG............................................................................................................................................................................... 191.000.00-----------------1.00---
........................................................GTTCTTCAATCTAGAATCTG.............................................................................................................................................................................. 201.000.00---------1.00-----------
...............................................................................................................................................................................................................GTTTTGTTTTTGTTTTGGACG...................... 211.000.00------------------1.00--
...............CATGATGGAAGGCAAACACGGGT.................................................................................................................................................................................................................... 2311.001.00------------1.00--------