ID: uc003avy.3_intron_11_0_chr22_38897286_r.3p
GENE: (1)
chr22:38897236-38897485-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(7)
B-CELL
(19)
BREAST
(42)
CELL-LINE
(5)
CERVIX
(2)
FIBROBLAST
(4)
HEART
(4)
HELA
(1)
KIDNEY
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(51)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
TCATAAACAGTATTTATTGTTGGGTAGTAAGGGAGGTTTTACACATTTCTCCATACCTTTAAATCACAGCAAATAAAATGGTCTTTTTGGAGGTAGGCTGGTAGTATCCCTAGAACTCCATCCTTTTTGAATATTCTTATGGCATGTACGATACGTTGCTTTAAAAATACTGATGAACTAACTAAAAATTCTGTTCCTAGATTTGGAGCAAGAGGTGGTGGTGGCCTTCCCCCGAAGAAATTTGGTAATC
....................................................................................................................................(((.(((.((((((((...))))).))).))).)))......((((..............))))......................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040037(GSM532922)
G243T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR038856(GSM458539)
D11. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGA.................................................241303.00303.00196.0018.009.00---4.00--3.004.004.00--1.005.00-2.001.002.003.003.002.003.00-3.00-1.00-2.00-2.001.00-----1.00-3.001.001.001.00--1.00-1.001.001.001.001.00----1.001.00-1.00---1.001.00-1.001.00------1.001.00---1.00------1.00------1.00-1.00-----1.00-------1.00------1.00-----1.00-------1.00--1.00-1.00---1.00------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAG..................................................23156.0056.006.003.00----2.00--2.001.002.003.00-1.001.00-2.001.001.00--1.00---1.001.00----2.00--2.00--2.001.00--1.001.00-1.00--1.001.00--1.00----------1.00-1.001.00---1.00-1.00----------------1.001.00----------------1.00-----------------1.001.001.00----1.001.00----1.001.00-------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAA................................................25137.00303.0015.005.00-----4.00------------1.00-------------1.00---------1.00--2.00-----1.00-1.00---1.00-------------------------1.001.00---------------------1.00-----------1.00---------1.00----------------
..................................................................................................................................................................................TAACTAAAAATTCTGTTCCTAGA.................................................23130.0030.0018.001.00----2.00---2.00-----------------1.00--1.00---1.00-----1.00-------------------2.00-----------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................TGAACTAACTAAAAATTCTGTTCCTAGAA................................................29127.004.00---16.00----9.00---------------------2.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTAGA.................................................25125.0025.0012.005.00-----1.00-1.00--1.00----------1.00--1.00-------------------1.00--------------------------1.00-------------------------------------1.00-----------------------------------
....................................................................................................................................................CGATACGTTGCTTTAAAAATACTGATGAACTA......................................................................32110.0010.00----10.00----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTAG..................................................24110.0010.002.00--------1.00-1.00--1.00------------1.00--------1.00---------------------1.001.00----------------------------------------------1.00----------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTAGAA................................................2619.0025.003.00---------------------------------1.00----1.00--------------2.00---------1.00--------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTA...................................................2219.009.001.00----4.001.00-----------1.00---------2.00----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................GATGAACTAACTAAAAATTCTGTTCCTAG..................................................2918.008.00--7.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TAACTAAAAATTCTGTTCCTAGAA................................................2417.0030.002.00------2.00---------------------1.00------------------------------------1.00--------------1.00-----------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGG.................................................2417.0056.004.00--------------------------------------------------------1.00-----------------------------------1.00-------------------------1.00---------------------------
............................................................................................................................................................................ATGAACTAACTAAAAATTCTGTTCCTAGAA................................................3015.001.00--1.00------------------------------3.00-------------------------------------------1.00---------------------------------------------------------------------
.............................................................................................................................................................................TGAACTAACTAAAAATTCTGTTCCTAGA.................................................2814.004.004.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGATTTGGAT..........................................314.000.00----4.00----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTA...................................................2314.004.00-----4.00---------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTAGGC................................................2613.0010.003.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGGC................................................2513.0056.003.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCC.....................................................2013.003.00-----3.00---------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................ATACTGATGAACTAACTAAAAATTCTGTTCCT....................................................3212.002.00-----------------------------------------------------1.00-1.00-------------------------------------------------------------------------------------------
..................GTTGGGTAGTAAGGGAGGTTTT..................................................................................................................................................................................................................2212.002.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TAACTAAAAATTCTGTTCCTAGC.................................................2312.002.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................TGAACTAACTAAAAATTCTGTTCCTAG..................................................2712.002.00-------2.00-------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TATGGCATGTACGATACGTT.............................................................................................2012.002.00----------------2.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGC.................................................2412.0056.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAC................................................2512.00303.002.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GTGGTGGCCTTCCCCCGAAGAA...........2212.002.00------------2.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TAACTAAAAATTCTGTTCCTAG..................................................2212.002.00---------1.00----------------1.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................ATACTGATGAACTAACTAAAAAT.............................................................2312.002.00------------------2.00--------------------------------------------------------------------------------------------------------------------------------
...........................................CATTTCTCCATACCTTTAAATCACAG.....................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00---------
.......................................................................................TGGAGGTAGGCTGGTAGTATCCCCAG.........................................................................................................................................261.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TACGATACGTTGCTTTAAAAATACTG..............................................................................2611.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TACTGATGAACTAACTAAAAATT............................................................2311.001.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................GATACGTTGCTTTAAAAATA.................................................................................2011.001.00----------------------------------------------------------------------------------------------------------------------------1.00----------------------
....................................................................................................................................ATTCTTATGGCATGTACGATACG...............................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------1.00-------------------------------------
................................................................................................................................................................................ACTAACTAAAAATTCTGTTCCTAGAAA...............................................2711.0025.00----------------------------------------------------------------------------------1.00----------------------------------------------------------------
............................AAGGGAGGTTTTACATAA............................................................................................................................................................................................................181.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................ATACTGATGAACTAACTAAAAATTCT..........................................................2611.001.00-------------------------------------------------------------------------------------------------------1.00-------------------------------------------
..................GTTGGGTAGTAAGGGAGGT.....................................................................................................................................................................................................................1911.001.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GATTTGGAGCAAGAGGTGGT...............................2021.001.00---------------------------------------------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAGA...............................................2611.00303.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................CTTTTTGGAGGTAGGCTGG.....................................................................................................................................................1911.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................ATACTGATGAACTAACTAAAAATT............................................................2411.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------
........................................................................................GGAGGTAGGCTGGTAGTATA..............................................................................................................................................201.000.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAAA...............................................2611.00303.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................GGAGGTAGGCTGGTAGTATT..............................................................................................................................................201.000.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................AAAATGGTCTTTTTGGAGG.............................................................................................................................................................1911.001.00-------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..............TATTGTTGGGTAGTAAGGTAA.......................................................................................................................................................................................................................211.000.00--------------------------------------------------------------------------------------------------------------------------------1.00------------------
......................................................................................................................................................ATACGTTGCTTTAAACGC..................................................................................181.000.00-------------------------------------------------------------------------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................ACTAAAAATTCTGTTCCTAGA.................................................2111.001.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TACTGATGAACTAACTAAAAATTC...........................................................2411.001.00-------------------------------------------------------------------------------------------------------------------------1.00-------------------------
..............................................................................................................................................................................................................AGCAAGAGGTGGTGGTGGCCT.......................2111.001.00-----------------------------------------------------------------------1.00---------------------------------------------------------------------------
..........................................................................................................................CTTTTTGAATATTCTTATGGCATGTACGATAC................................................................................................3211.001.00-----------------------------------------------------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................TGAACTAACTAAAAATTCTGTTCCT....................................................2511.001.00----------------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................................................................................................................................................TAACTAAAAATTCTGTTCCTA...................................................2111.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GATTTGGAGCAAGAGGTGGTGGTGGCC........................2711.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TAGATTTGGAGCAAGAGGTGGTG..............................2311.001.00----------------------1.00----------------------------------------------------------------------------------------------------------------------------
....................TGGGTAGTAAGGGAGGTTTAC.................................................................................................................................................................................................................211.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCTAG...................................................221.000.00----------------------------------------------------------------------------------------------------------------------------------------------1.00----
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCT....................................................2111.001.00--------------------------------------------------------------------------------------------------1.00------------------------------------------------
...................................................................................TTTTTGGAGGTAGGCATTG....................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------------------------------1.00------------------------------
...................................................................................................................................................................................................................GAGGTGGTGGTGGCCTTCCCCCGAA..............2511.001.00------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAT................................................2511.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CGATACGTTGCTTTAAAAA...................................................................................1911.001.00--------------------------------------------------------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................ATACTGATGAACTAACTAA.................................................................1911.001.00--------------------------------------------------------------------------------------------------------1.00------------------------------------------
............................................................................................................................................................................ATGAACTAACTAAAAATTCTGT........................................................2211.001.00--------------------------------------------------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................ATACGTTGCTTTAAAAATACTGATGAACTA......................................................................3011.001.00--------------------------------------------------------------1.00------------------------------------------------------------------------------------
.....................................................................................TTTGGAGGTAGGCTGGTC...................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------1.00-----------------------------------------
...........................................................................AAATGGTCTTTTTGGGC..............................................................................................................................................................171.000.00---------------------------------------------------------------------------------------------------------------------------------------------1.00-----
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAAC...............................................2611.00303.00------------------------------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACTAACTAAAAATTCTGTTCCT....................................................2311.001.00------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.....AACAGTATTTATTGTTGGGTAGTAA............................................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------------------------1.00------------------------------------------------------
..............................................................................................................................................................................................................................GGCCTTCCCCCGAAGAA...........1711.001.00------------------------------------------------------------------------------1.00--------------------------------------------------------------------
.....................................................................................................................................................................................CTAAAAATTCTGTTCCTAG..................................................1911.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................ATGAACTAACTAAAAATTCTGTTCCTAGA.................................................2911.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACTAACTAAAAATTCTGTTCCTAGAA................................................271.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGAG................................................2511.00303.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................CTGATGAACTAACTAAAAATTCTGTTCCTAGA.................................................3211.001.00--------------------------------------------1.00------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CAAGAGGTGGTGGTGGCCTTCCCCTT................261.000.00---------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTATAA................................................2511.009.00----------------------------------------------------------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................ATGAACTAACTAAAAATTCTGTTCCTAG..................................................2811.001.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGTTA...............................................2611.0056.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TACTGATGAACTAACTAAAAAT.............................................................2211.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CGATACGTTGCTTTAAAAATACTGATGAATTA......................................................................321.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACTAACTAAAAATTCTGTTCCTAG..................................................2511.001.00-------------------------------------------------------------------------------------------------------------------1.00-------------------------------
.............................................................................ATGGTCTTTTTGGAGGTAGGCTGG.....................................................................................................................................................2411.001.00--------------------------------------------------------1.00------------------------------------------------------------------------------------------
...............................................................................................................................................................TTTAAAAATACTGATGAACTAAC....................................................................2311.001.00---------------------------------------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TTGGAGCAAGAGGTGGTGGTGGCCT.......................2511.001.00------------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGTTCCTAGGA................................................2511.0056.001.00--------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................AGGTAGGCTGGTAGTATCCCTAGAAC......................................................................................................................................2611.001.00-------------------------------------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................AAATGGTCTTTTTGGAGGTAGGCTGGTA...................................................................................................................................................2811.001.00--------------------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................................................................................................................................ATGAACTAACTAAAAATTCTGTTCCTAGG.................................................2911.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................CTGATGAACTAACTAAAAATTCTGTTCCTAGAA................................................3311.001.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTAACTAAAAATTCTGT........................................................1730.670.67-----0.67---------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CTAGATTTGGAGCAAGAG....................................1820.500.50-------------------------------------------------------------------0.50-------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTTGGAGCAAGAGGTGGT...............................1820.500.50-----------------------------------------------------------------------------------------------------------------------------------------------0.50---
.......................................................................................................................................................................................................GATTTGGAGCAAGAGGTG.................................1820.500.50--------------------------------------------------------------------0.50------------------------------------------------------------------------------
.......................................................................................................................................................................................................GATTTGGAGCAAGAGG...................................1660.170.17------------------------------------------------------------------------------------------------------------------------------------------------0.17--

Antisense strand
TCATAAACAGTATTTATTGTTGGGTAGTAAGGGAGGTTTTACACATTTCTCCATACCTTTAAATCACAGCAAATAAAATGGTCTTTTTGGAGGTAGGCTGGTAGTATCCCTAGAACTCCATCCTTTTTGAATATTCTTATGGCATGTACGATACGTTGCTTTAAAAATACTGATGAACTAACTAAAAATTCTGTTCCTAGATTTGGAGCAAGAGGTGGTGGTGGCCTTCCCCCGAAGAAATTTGGTAATC
....................................................................................................................................(((.(((.((((((((...))))).))).))).)))......((((..............))))......................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040037(GSM532922)
G243T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR038856(GSM458539)
D11. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGAATC.......................... 196.000.00-------------6.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGGAGCC......................... 203.000.00-------------------------------------1.00---------------------------------------------------------------1.00----------1.00----------------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGGAGC.......................... 192.000.00-----------------------------------------------------------------------------------1.00--------------------------------------1.00------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGGTAGC......................... 201.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGAGCA.......................... 191.000.00----------------------------------------------------------------------------------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................TGGTGGCCTTCCCCCGCGC............. 191.000.00-----------------------------------------------------------------------------------------------1.00---------------------------------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGAGAA.......................... 191.000.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GTGGTGGTGGCCTTCGA................... 171.000.00---------------------------------------------------------------------1.00-----------------------------------------------------------------------------
............................................................................................GTAGGCTGGTAGTATTATA........................................................................................................................................... 191.000.00---------------------------------------------------------------------------------------------------1.00-----------------------------------------------
...............................................TCTCCATACCTTTAAAGTCG....................................................................................................................................................................................... 201.000.00------------------------------------------------------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGAGT........................... 181.000.00---------------------------------------------------------------------------------------------------------------------------------------1.00-----------
.............................................................................................................................................................................................................GAGCAAGAGGTGGTGACAA.......................... 191.000.00------------------------------------------------------------------------------------1.00--------------------------------------------------------------
...................................................................AAGACCATTTTATTTGCT..................................................................................................................................................................... 1830.670.67----------------0.67----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GGAAGGCCACCACCA.................... 1560.500.50-------------------0.17-----------------------------------------------------------------------------------------------------------------------------0.170.17
.......................................................................................................................................................................................................................TGGTGGTGGCCTTCCGGAG................ 190.170.00----------------------------------------------------------------------0.17----------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGGTGGTGGCCTTCCGC.................. 170.170.00---------------------------------------------------------------------0.17-----------------------------------------------------------------------------
..............................................................................................................................................................................................................CACCACCACCTCTTGCT........................... 1760.170.17------------------------------------------0.17--------------------------------------------------------------------------------------------------------