ID: uc003aqz.1_intron_4_0_chr22_37582087_r.3p
GENE: C1QTNF6(4)
chr22:37582037-37582286-


(1)
AGO2.ip 		(1)
BRAIN 		(4)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TGTCCAGAGGGGCACCTTCTTTGCTTTGCACAAAGGCACTCTAAAGACTAGCAATGGGCTGCAGTCAAGGACCCAGTATTCCTTCTCCTGACTGCTCAGCGATGCAATGACACCATCACCGCGCACCACCCCACATGCTCTCATGGACGTTGCTTTCTGTCTGCTAGGATCAATGAACTCTCTTATCTCTTTTTTTTCAGAACTATGGTGTTCTCACACCAAAGCATGGGCTCGGCCACCCATCCCCTCT
......................................................(((((.((((((.((((...((.....))..))))))))))...(((.((..(((....))))).))))).)))..........................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189786GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................................................................................AATGACACCATCACCCCCG..............................................................................................................................1925.000.0014.009.00-------1.00----1.00-----------
.........................................................................................................AATGACACCATCACCCCG...............................................................................................................................186.000.001.005.00------------------------
.........................................................................................................AATGACACCATCACCCTCG..............................................................................................................................192.000.001.001.00------------------------
.........................................................................................................AATGACACCATCACCCCCA..............................................................................................................................192.000.001.00--------------1.00----------
........................................................................................................CAATGACACCATCACCGCGCACCACCCC......................................................................................................................2812.002.00------2.00-------------------
.......................................................GGGCTGCAGTCAAGGAC..................................................................................................................................................................................1721.501.50--------1.50-----------------
.........................................................................................................AATGACACCATCACCGCC...............................................................................................................................181.000.001.00-------------------------
.........................................................................................................AATGACACCATCACCCAG...............................................................................................................................181.000.00-1.00------------------------
.........................................................................................................AATGACACCATCACCACG...............................................................................................................................181.000.001.00-------------------------
......................................................................................................................................................................................TTATCTCTTTTTTTTCTTTG................................................201.000.00-------------------------1.00
............................................................GCAGTCAAGGACCCAATA............................................................................................................................................................................181.000.00---------------------1.00----
........................................................................................................................................................................................ATCTCTTTTTTTTCAGAACTATGG..........................................2411.001.00--------------------1.00-----
.........................................................................................................AATGACACCATCACCTACT..............................................................................................................................191.000.00-1.00------------------------
.......................................................................................................................................................................................TATCTCTTTTTTTTCAGAACTATGGTG........................................2711.001.00---1.00----------------------
...................................................................................................................................................................................CTCTTATCTCTTTTTTAG.....................................................181.000.00-------1.00------------------
.................................................AGCAATGGGCTGCAGTCAAGGA...................................................................................................................................................................................2211.001.00------------------------1.00-
................................AAGGCACTCTAAAGACTAGC......................................................................................................................................................................................................2011.001.00------------------1.00-------
................................................................................................CAGCGATGCAATGACACC........................................................................................................................................1811.001.00------------1.00-------------
.........................................................................................................................................................................................................ACTATGGTGTTCTCAATAG..............................191.000.00----------------------1.00---
..................................................................................................................................................................GCTAGGATCAATGAACTCTG....................................................................201.000.00-------------1.00------------
.....................................................................................................................................................................................CTTATCTCTTTTTTTTCTCTG................................................211.000.00-------1.00------------------
.........................................................................................................AATGACACCATCACCTCCG..............................................................................................................................191.000.00-1.00------------------------
...............................................CTAGCAATGGGCTGCAGTCAAGG....................................................................................................................................................................................2311.001.00---1.00----------------------
........................................................................................................................GCGCACCACCCCACATGCTC..............................................................................................................2011.001.00-------------------1.00------

Antisense strand
TGTCCAGAGGGGCACCTTCTTTGCTTTGCACAAAGGCACTCTAAAGACTAGCAATGGGCTGCAGTCAAGGACCCAGTATTCCTTCTCCTGACTGCTCAGCGATGCAATGACACCATCACCGCGCACCACCCCACATGCTCTCATGGACGTTGCTTTCTGTCTGCTAGGATCAATGAACTCTCTTATCTCTTTTTTTTCAGAACTATGGTGTTCTCACACCAAAGCATGGGCTCGGCCACCCATCCCCTCT
......................................................(((((.((((((.((((...((.....))..))))))))))...(((.((..(((....))))).))))).)))..........................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189786GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................CTCGGCCACCCATCCTGG.. 186.000.00--3.00--1.00-----------1.00-----1.00--
.....................................................................................................................................................................................................................................GCTCGGCCACCCATCCGG... 184.000.002.00-1.00--1.00--------------------
...................................................................AGGACCCAGTATTCCGT...................................................................................................................................................................... 172.000.00----2.00---------------------
.........................................................................................................................................................................TCAATGAACTCTCTTAAGA.............................................................. 191.000.00-----------1.00--------------
......................................................................................................................................................................................................................................CTCGGCCACCCATCCAGG.. 181.000.00--1.00-----------------------
...............................................................................TCCTTCTCCTGACTGCGTT........................................................................................................................................................ 191.000.00----------1.00---------------
...................................................................AGGACCCAGTATTCCGTA..................................................................................................................................................................... 181.000.00----------------1.00---------
.................TTGTGCAAAGCAAAGA......................................................................................................................................................................................................................... 1660.170.17---------0.17----------------