ID: uc003ald.1_intron_6_0_chr22_31957379_f.3p
GENE: SFI1(7)
chr22:31968844-31969093+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(2)
B-CELL 		(20)
BREAST 		(14)
CELL-LINE 		(11)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(7)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTTTTGAAAGCAGAATGTCCCTCTTAAAGACCCTTTTACCCCACGGTCCCATAGCTTATCATCCTGCTAGGGGATTGCCACTTCCTTGTTTCTAATTTCAGCCTTTCCAGCGTGTGTGCCTTTCTCTTTTCCCTCTCCACCTGTACTTCACCCTGTTTTCCTGCCTCTCCTTTGACTGTTGCCTCTTCTCTGGTTTTCAGGCTTGGTCACAGTGGCGGGAACAGCTCCTGTATGTCCAGAAGGAGAAACA
...................................................((((..........))))(((((.....((......)).........(((......(((.(((.((((.......................))))..))).))).....)))..)))))................................................................................
..................................................51..........................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577590(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR189782SRR029127(GSM416756)
A549. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		GSM532872(GSM532872)
G652T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040016(GSM532901)
G645N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...................................................TAGCTTATCATCCTGCTGTTG..................................................................................................................................................................................2139.000.005.007.001.001.003.001.00--1.001.002.001.001.001.00-----1.00-1.00---1.00-1.00---1.00--1.001.00----1.00---1.001.00----1.001.00-1.00-1.00-------------
...................................................TAGCTTATCATCCTGCTGTTT..................................................................................................................................................................................2113.000.001.004.003.001.00-------------1.001.00---------1.00---------1.00------------------------------
...................................................TAGCTTATCATCCTGATGT....................................................................................................................................................................................1925.000.501.00----0.500.500.50--------0.50-------0.50-----------------------------------------0.500.500.50
...................................................TAGCTTATCATCCTGCTGTT...................................................................................................................................................................................205.000.001.001.00--1.00------------------------1.00-------------------1.00-------------------
...................................................TAGCTTATCATCCTGAT......................................................................................................................................................................................1724.000.500.50-----1.001.00----0.50-----------0.50---------------------------------0.50----------
...................................................TAGCTTATCATCCTGATG.....................................................................................................................................................................................1824.000.50------0.500.50---0.50---0.50--0.50--------------------------------------0.50-----0.500.50----
...................................................TAGCTTATCATCCTGCTGTTA..................................................................................................................................................................................213.000.002.00-----------------------------------------------1.00--------------------
...................................................TAGCTTATCATCCTGCTGTTC..................................................................................................................................................................................213.000.00-2.00-1.00-----------------------------------------------------------------
...................................................TAGCTTATCATCCTGCTTTTG..................................................................................................................................................................................212.000.001.00--------------------------------1.00-----------------------------------
...................................................TAGCTTATCATCCTGCTGCTG..................................................................................................................................................................................212.000.001.00-----------------------------------------1.00--------------------------
...................................................TAGCTTATCATCCTGCTGT....................................................................................................................................................................................192.000.00-----1.00---1.00-----------------------------------------------------------
........................................................................................................................................................................................................................................TGTCCAGAAGGAGAAAC.1711.001.00----------------------------------------------------1.00----------------
...................................................TAGCTTATCATCCTGCTTGGT..................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------
...................................................TAGCTTATCATCCTGCTTTTT..................................................................................................................................................................................211.000.00-------------------------------------1.00-------------------------------
.............................................................................................................................................................................................................GTCACAGTGGCGGGAACATC.........................201.000.00---------------1.00-----------------------------------------------------
...................................................TAGCTTATCATCCTGATA.....................................................................................................................................................................................1821.000.500.50----------------------------------------------------------------0.50---
...................................................TAGCTTATCATCCTGCAT.....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------
...................................................TAGCTTATCATCCTGTTGT....................................................................................................................................................................................1921.000.50------0.50----------0.50---------------------------------------------------
...................................................TAGCTTATCATCCTGCTTTTC..................................................................................................................................................................................211.000.00---1.00-----------------------------------------------------------------
......................................................................................................................................................CCCTGTTTTCCTGCCTCTCCTT..............................................................................2211.001.00--------------------1.00------------------------------------------------
.....................................................GCTTATCATCCTGCTAAT...................................................................................................................................................................................181.000.00------------------------------1.00--------------------------------------
.....GAAAGCAGAATGTCCCTCTTA................................................................................................................................................................................................................................2111.001.00-----------------------1.00---------------------------------------------
..............................CCCTTTTACCCCACGGTCCCATAG....................................................................................................................................................................................................2411.001.00---------------------------------------1.00-----------------------------
...................................................TAGCTTATCATCCTGCTATTGA.................................................................................................................................................................................221.000.00--------------1.00------------------------------------------------------
...................................................TAGCTTATCATCCTGCTTCTG..................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------
.......................................................................................................................................................CCTGTTTTCCTGCCTCTCCTT..............................................................................2111.001.00-----------------------------------------1.00---------------------------
.......................................................................................................................CTTTCTCTTTTCCCTCTTTAG..............................................................................................................211.000.00----------------------1.00----------------------------------------------
...................................................TAGCTTATCATCCTGCTCTC...................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------
...................................................TAGCTTATCATCCTGCTCCTC..................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------
........................................................................................................................................................................................................................................TGTCCAGAAGGAGAAACC1811.001.00------------------------------------1.00--------------------------------
...................................................TAGCTTATCATCCTGCTGGTG..................................................................................................................................................................................211.000.00--1.00------------------------------------------------------------------
...................................................TAGCTTATCATCCTGCTGTCG..................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------
...................................................TAGCTTATCATCCTGCTATTTA.................................................................................................................................................................................221.000.001.00--------------------------------------------------------------------
...................................................................................................................................................................................................................GTGGCGGGAACAGCTC.......................1611.001.00-------------------------------------------1.00-------------------------
...................................................TAGCTTATCATCCTGCTCATT..................................................................................................................................................................................211.000.00----------------1.00----------------------------------------------------
.....................................................................................................................................................................TCTCCTTTGACTGTTGGCCT.................................................................201.000.00--------1.00------------------------------------------------------------
...................................................TAGCTTATCATCCTGGTG.....................................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50-------
...................................................TAGCTTATCATCCTGATGA....................................................................................................................................................................................1920.500.50--------------0.50------------------------------------------------------
...................................................TAGCTTATCATCCTGATTT....................................................................................................................................................................................1920.500.50------------------------------------------------------------0.50--------
...................................................TAGCTTATCATCCTGATGC....................................................................................................................................................................................1920.500.50--------------------------------------------------------------0.50------
...................................................TAGCTTATCATCCTGGTGT....................................................................................................................................................................................1920.500.50-------------0.50-------------------------------------------------------
...................................................TAGCTTATCATCCTG........................................................................................................................................................................................1520.500.50--------------------------------------------------------0.50------------
...................................................TAGCTTATCATCCTGATC.....................................................................................................................................................................................1820.500.50-----------------------------------------------------------0.50---------

Antisense strand
CTTTTGAAAGCAGAATGTCCCTCTTAAAGACCCTTTTACCCCACGGTCCCATAGCTTATCATCCTGCTAGGGGATTGCCACTTCCTTGTTTCTAATTTCAGCCTTTCCAGCGTGTGTGCCTTTCTCTTTTCCCTCTCCACCTGTACTTCACCCTGTTTTCCTGCCTCTCCTTTGACTGTTGCCTCTTCTCTGGTTTTCAGGCTTGGTCACAGTGGCGGGAACAGCTCCTGTATGTCCAGAAGGAGAAACA
...................................................((((..........))))(((((.....((......)).........(((......(((.(((.((((.......................))))..))).))).....)))..)))))................................................................................
..................................................51..........................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577590(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR189782SRR029127(GSM416756)
A549. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		GSM532872(GSM532872)
G652T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040016(GSM532901)
G645N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.........GCAGAATGTCCCTCTGTTT.............................................................................................................................................................................................................................. 191.000.00--------------------------1.00------------------------------------------
....................................................................................................................AGGTGGAGAGGGAAAAGAGAAAGGCA............................................................................................................ 2611.001.00--------------------------------1.00------------------------------------
..........................................................................................................................TCTCTTTTCCCTCTCCACAGA........................................................................................................... 211.000.00-----------------------------------------------1.00---------------------
..................................................................................................................................................................................TTGCCTCTTCTCTGGTGG...................................................... 181.000.00------------------------------------------------------1.00--------------
.....................TCTTAAAGACCCTTTAAA................................................................................................................................................................................................................... 181.000.00----------------------------------------------1.00----------------------