ID: uc003agr.2_intron_12_0_chr22_30209532_r.3p
GENE: (7)
chr22:30209482-30209731-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(4)
HEART 		(6)
HELA 		(3)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGAGAGGTTAGGTGACTCACCCAGATCGTGCTCCTGAAGATGGACTAGCCAGACTTTGCCTGGGACCTCCAGTGTTCTTTTCCTCCTGTGTAACATCCTGCCTGTTTGGGACCCTGACTGTTTTAATGTTGTCTCAGGTGCTCTGCAGATCTGTATGTGTGGACAGAGGAGAATAATGCAGTGTATTCTTTTGGCAACAGGAATTAAAGGACATTGTTCTCTACCTTTGTGATACCTGCACCACACTTTG
........................................................................................................................((((....((((((((.((((...........)))).)).))))))..))))..............................................................................
........................................................................................................................121.................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR038856(GSM458539)
D11. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGC........................................................................................................21119.0019.00-4.00---1.00-2.00--2.00--3.001.00-1.00-1.00--1.001.00--------------1.00-------1.00---------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGCA.......................................................................................................22117.0017.007.00-5.00--1.00----1.00---1.00---1.00------------------------------1.00-----
..............................................................................................................................TGTTGTCTCAGGTGCTCTGCA.......................................................................................................21117.0017.0011.00--1.00-------1.00----------------1.00---------------1.00---1.00--1.00---
..............................................................................................................................TGTTGTCTCAGGTGCTCTGC........................................................................................................20112.0012.00-2.00-----1.00---1.002.00--2.001.001.00-------1.00--------1.00--------------------
.......................................................................................................................................................TGTATGTGTGGACAG....................................................................................15010.0010.00------4.00-3.00----------2.00----1.00------------------------------
.......................................................................................................................................................TGTATGTGTGGACAGCAA.................................................................................1806.0010.00----2.00------------1.00--2.00-----------------1.00----------------
..............................................................................................................................TGTTGTCTCAGGTGCTCTGCAA......................................................................................................2214.0017.004.00------------------------------------------------------
....................................................................................................................................CTCAGGTGCTCTGCAGATCTGTATGTGTGGACAGAGGAGAATAATGCAGTGTATTCTTTTGGCAACAGTT................................................703.000.00---------3.00---------------------------------------------
..............................................................................................................................TGTTGTCTCAGGTGCTCTG.........................................................................................................1913.003.00--1.001.00-----------1.00---------------------------------------
..................ACCCAGATCGTGCTCCTGAAGATGGACTAGCCAGACTTTGCCTGGGACCTCCAGTGTTCTTTT.........................................................................................................................................................................6312.002.00-----------------------2.00-------------------------------
.......................................................................................................................................................TGTATGTGTGGACAGAAAAA...............................................................................202.000.00----2.00--------------------------------------------------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTG.........................................................................................................2012.002.00------------1.00---------------------------------1.00--------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGCT.......................................................................................................2211.0019.00-----------------------------------1.00-------------------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGCAA......................................................................................................2311.0017.00-----1.00-------------------------------------------------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGCAAT.....................................................................................................2411.0017.00-----------1.00-------------------------------------------
.......................................................................................................................................................TGTATGTGTGGACAGAAAGA...............................................................................201.000.00-----1.00-------------------------------------------------
.............................................................................................................................ATGTTGTCTCAGGTGCTCTGCAGATC...................................................................................................2611.001.00--------------------------------------------------1.00----
...............................................................................................................................GTTGTCTCAGGTGCTCTGCA.......................................................................................................2011.001.001.00------------------------------------------------------
.............................................................................................................................................................................TAATGCAGTGTATTCTATTG.........................................................201.000.00-----------------------------1.00-------------------------
.......................................................................................................................................................TGTATGTGTGGACAGAACT................................................................................191.000.00-------------------------------1.00-----------------------
................................................................................................................................................................................................................GGACATTGTTCTCTACCTTTGTGATACC..............2811.001.00--------------------------1.00----------------------------
.......................................................................................................................................................................................................................................ATACCTGCACCACACTTTG1911.001.00---1.00---------------------------------------------------
..................................................................................................................................................................................CAGTGTATTCTTTTGGCAACAGA.................................................231.000.00----------------------1.00--------------------------------
..............................................................................................................................TGTTGTCTCAGGTGCTCTGCAGA.....................................................................................................2311.001.00------------------------------------1.00------------------
.............................................................................TTTTCCTCCTGTGTATGGC..........................................................................................................................................................191.000.00----------------------------------------1.00--------------
.......................................................................................................................................................TGTATGTGTGGACAGCAAA................................................................................1901.0010.00-----------------------------------------1.00-------------
..............................................................................................................................TGTTGTCTCAGGTGCTGAAT........................................................................................................201.000.00--------------1.00----------------------------------------
..............................................................................................................................TGTTGTCTCAGGTGCTCTGA........................................................................................................2011.003.00------------------------------1.00------------------------
........................................................................................................................................................................................................................TTCTCTACCTTTGTGATACCTGCA..........2411.001.00-------------------------------------------1.00-----------
..................................................................................................................................................................................................................ACATTGTTCTCTACCTTTG.....................1911.001.00---1.00---------------------------------------------------
..........................................................................................................................................................................................................ATTAAAGGACATTGTTCT..............................1820.500.50------------------------0.50------------------------------
......................................................................................................................................................CTGTATGTGTGGACAG....................................................................................1640.250.25------------------------------------------------------0.25

Antisense strand
AGAGAGGTTAGGTGACTCACCCAGATCGTGCTCCTGAAGATGGACTAGCCAGACTTTGCCTGGGACCTCCAGTGTTCTTTTCCTCCTGTGTAACATCCTGCCTGTTTGGGACCCTGACTGTTTTAATGTTGTCTCAGGTGCTCTGCAGATCTGTATGTGTGGACAGAGGAGAATAATGCAGTGTATTCTTTTGGCAACAGGAATTAAAGGACATTGTTCTCTACCTTTGTGATACCTGCACCACACTTTG
........................................................................................................................((((....((((((((.((((...........)))).)).))))))..))))..............................................................................
........................................................................................................................121.................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR038856(GSM458539)
D11. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
...........................................................................................AACATCCTGCCTGTTTGGCT........................................................................................................................................... 203.000.00---1.00-----------------------1.00--------------1.00------------
..........................................................................................................................................................................................................................................CCTGCACCACACTTTGAAG 191.000.00-----------------------------------------------1.00-------
..............................................................................................................ACCCTGACTGTTTTAGTT.......................................................................................................................... 181.000.00---------------------------------1.00---------------------
..........................................................................................................................................................................................................................................CCTGCACCACACTTTGGGA 191.000.00----------------------------------------------------1.00--
.............................................................................................................................................................................................TTTGGCAACAGGAATTAAGAA........................................ 211.000.00---------------------------------------1.00---------------
................................................................................................................................................................................TGCAGTGTATTCTTTCCA........................................................ 181.000.00--------------------------------1.00----------------------
.....................................................................GGAGGAAAAGAACACTG.................................................................................................................................................................... 1711.001.00---------------------1.00---------------------------------
.................................................................................................................................TGTCTCAGGTGCTCTTCCG...................................................................................................... 191.000.00---1.00---------------------------------------------------
.......................................................................................GGCAGGATGTTACAC.................................................................................................................................................... 1520.500.50-----------------------------------------------------0.50-