ID: uc003afq.9
GENE: THOC5(2)
chr22:29924117-29924312-


(1)
AGO1.ip 		(2)
AGO2.ip 		(9)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(19)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)
.........................................................................................GGGAAGGGGAGATTGCTATGACT....................................................................................23117.0017.001.00--1.002.00---1.00--1.00-1.00--------1.00---------------1.00----1.001.00----1.00--1.001.00---1.00-1.001.00
........................................................................................AGGGAAGGGGAGATTGCTAT........................................................................................2015.005.003.002.00-----------------------------------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGACT....................................................................................2415.005.00-----1.00----1.00-------------------1.00---------1.00------1.00-------------
.........................................................................................GGGAAGGGGAGATTGCTATGAC.....................................................................................2214.004.00-----1.00-----------------1.00--1.00------1.00---------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGA......................................................................................2214.004.00---1.00------------1.00--------1.00----------------------------1.00------
............................................................................................................................CTTGGCACTTTCCTTTGTCCAG..................................................2213.003.00------1.00-------2.00----------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATG.......................................................................................2013.003.00-3.00-----------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGACA....................................................................................2312.004.00-------------1.00------------------------------------1.00----------
............................................................................................................................CTTGGCACTTTCCTTTGTCCAGT.................................................2312.003.00-----------------1.00----------------------------------------1.00--
.........................................................................................GGGAAGGGGAGATTGCTATGA......................................................................................2112.002.00----------1.00--------------------------------------------1.00-----
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACA..........2812.002.00------------2.00------------------------------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGACGACAAACGC.....2711.001.00---------1.00---------------------------------------------------
..........................................................................................................................................................................GTTCAGTTGGACGACAAACGCAAGGA2611.001.00---------------------------------------------------1.00---------
.................................................................................................................................................................ACACTGGGGGTTCAGTTGGACGA............2311.001.00-----------------------------------1.00-------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGAC..............1811.001.00---------------1.00---------------------------------------------
......................................................................................................................................................................GGGGGTTCAGTTGGACGA............1811.001.00--------1.00----------------------------------------------------
............................................CAGCAGGTGCCAGGCCATG.....................................................................................................................................191.000.00------------------------1.00------------------------------------
............................................................................................................................................................................TCAGTTGGACGACAAACG......1811.001.00-------1.00-----------------------------------------------------
............................................................................................................................CTTGGCACTTTCCTTTGTCCATT.................................................231.000.00---------------------------------------------1.00---------------
.......................................................AGGCAGTAGGGCTGAGGCCTGG.......................................................................................................................2211.001.00-----------------------------1.00-------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGAGT....................................................................................2411.004.00--------------------------------1.00----------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGA...............2311.001.00----------------------------------1.00--------------------------
.......................TGACAACCCAGCTAGCTGAAGCAGCAGA.................................................................................................................................................281.000.00---------1.00---------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGACAA...................................................................................2411.004.00---------------------1.00---------------------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACAAACGC.....3311.001.00-------------------------------1.00-----------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGACAAACGCAAGGA3411.001.00------1.00------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTAT........................................................................................1911.001.001.00------------------------------------------------------------
................................................................................................................................................................CACACTGGGGGTTCAGTTGG................2011.001.00---------------------------------------1.00---------------------
..................................................................................................................................................................CACTGGGGGTTCAGTGG.................171.000.00----------------------------1.00--------------------------------
...................................................................................................................................................AGCGCCGGAGACCCAGGC...............................181.000.00---------------------------1.00---------------------------------
..........................................AGCAGCAGGTGCCAGGCAGAGGG...................................................................................................................................231.000.00------------------------------------1.00------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGAC...........2711.001.00-----------------------------------------1.00-------------------
..................................................................................................................................................AAGCGCCGGAGACCCACACTGGGGGC........................261.000.00-------------------------------------1.00-----------------------
............................................................................................................................CTTGGCACTTTCCTTTG.......................................................1711.001.00--1.00----------------------------------------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGAC...........2311.001.00-----------1.00-------------------------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGAC.....................................................................................2311.001.00------------------------------------------------1.00------------
...........................................................................................................................................................................TTCAGTTGGACGACAAACTCTG...221.000.00--------------------1.00----------------------------------------
.........................................................................................................................................................................GGTTCAGTTGGACGACAA.........1811.001.00-------1.00-----------------------------------------------------
.................................GCTAGCTGAAGCAGCAG..................................................................................................................................................1711.001.00-------------------1.00-----------------------------------------

Antisense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)
...............................................................................................................................................................................GTTGGACGACAAACGCGGTT. 201.000.00------------------1.00------------------------------------------
................................................................................................................................................................................GCGTTTGTCGTCCAA..... 1511.001.00------------------------------------------1.00------------------
...........GGGAGGGGAGTCTGAGTT....................................................................................................................................................................... 181.000.00--1.00----------------------------------------------------------
.............................................AGCAGGTGCCAGGCAGTCAC................................................................................................................................... 201.000.00--------------------------------------------------------1.00----
...........................AACCCAGCTAGCTGATGTA...................................................................................................................................................... 191.000.00----------------------------------------------1.00--------------
..........TCAGACTCCCCTCCCA.......................................................................................................................................................................... 1640.250.25--0.25----------------------------------------------------------