ID: uc003aes.6
GENE: EWSR1(7)
chr22:29684395-29684644+


(2)
AGO2.ip 		(4)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(24)
CELL-LINE 		(4)
HEART 		(1)
HELA 		(5)
LIVER 		(4)
OTHER 		(11)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AGGTTATTTCAGCTGTGATGATCCAGCAGTTTTGTTGAACTTAAAAGAGCCTACCTATTAAGGATGCTTTATCGTGATGTAAAGAAGATGGTGCCTTGGTTAGTGCCTTGGAATTGAGGATTTTGTGATTCCAGGAGAAAGTACATCAGGCAGTGGTGTAAATGCTGGTCCATGGCTTACAGATGTGACTCTTTCCTCAGGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAG
....................................................................................................................................((((((.((((((((((((.((((.((....))....)))).))))...)))))).)).)))))).....................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................TTACAGATGTGACTCTTTCCTCA...................................................23120.0020.0019.001.00-------------------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTT........................................................22110.0010.00---5.00---1.001.00-1.00------------------------------------------1.001.00--------
.................................................................................................................................................................................TACAGATGTGACTCTTTCCTCA...................................................2218.008.004.003.00--------------------------------------------1.00----------------
..................................................................................................................................................................................ACAGATGTGACTCTTTCCTCAG..................................................2218.008.004.003.00------------------------1.00------------------------------------
..................................................................................................................................CCAGGAGAAAGTACATCAGGCAGT................................................................................................2418.008.00----6.00------------2.00---------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTTCCT.....................................................2517.007.00--2.00------1.00------------1.00--------1.00----1.00---------------------1.00----
................................................................................................................................................................................TTACAGATGTGACTCTTTCCTC....................................................2217.007.005.001.00--------1.00----------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTTC.......................................................2316.006.00--4.00----------1.00-1.00-----------------------------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGACTCTTT........................................................2316.006.00---1.00----3.00--1.00---------------1.00-----------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTTCCTC....................................................2614.004.00-----4.00---------------------------------------------------------
..................................................................................................................................................................................ACAGATGTGACTCTTTCCTCA...................................................2114.004.003.00--------1.00-----------------------------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTCCTCAA..................................................2314.008.00-4.00-------------------------------------------------------------
....................................................................................................................................AGGAGAAAGTACATCAGGCA..................................................................................................2013.003.00----------------------------1.00--------1.00-------------------1.00-----
................................................................................................................................................................................TTACAGATGTGACTCTTTCCT.....................................................2113.003.002.00----1.00---------------------------------------------------------
...............................................................................................................................................................................CTTACAGATGTGACTCTTTCCT.....................................................2213.003.00--3.00------------------------------------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTCCTCAGT.................................................2413.003.001.00-1.00--------------------1.00---------------------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGACTCTTTC.......................................................2413.003.00--1.00----------1.00--1.00----------------------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTCCTCAG..................................................2313.003.003.00--------------------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTTCC......................................................2413.003.00------------2.00----------------------------1.00---------------------
................................................................................................................................................................................TTACAGATGTGACTCTTTCCTCAG..................................................2412.002.002.00--------------------------------------------------------------
................................................................................................................................................................................TTACAGATGTGACTCTTTCCTCT...................................................2312.007.00--------------1.00----------1.00-------------------------------------
..................................................................................................................................................................................ACAGATGTGACTCTTTCCT.....................................................1912.002.002.00--------------------------------------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTCCTC....................................................2112.002.002.00--------------------------------------------------------------
.........................GCAGTTTTGTTGAACTCTG..............................................................................................................................................................................................................192.000.00---------------------------------------------1.00-----1.00-----------
..........................................................................................................................................................................CATGGCTTACAGATGTGACTCTT.........................................................2312.002.00----------------1.00---------------------------------------1.00------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTT.........................................................2112.002.00-------1.00------------------------------------1.00------------------
...............................................................................................................................................................................................................CCGACAGGACCACCCCAGTAGCATGGGTG..............2912.002.00------2.00--------------------------------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTCTTCA...................................................221.000.001.00--------------------------------------------------------------
................................................................................................................................................................................TTACAGATGTGACTCTTT........................................................1811.001.00------------------1.00--------------------------------------------
...................................................................................................................................................................................CAGATGTGACTCTTTCCTCAGA.................................................221.000.00------------------1.00--------------------------------------------
........................................................................................................................................................GTGGTGTAAATGCTGGTCCATGGCTTAC......................................................................2811.001.00-----------------------------------------------------------1.00---
....................................................................................................................................AGGAGAAAGTACATCAGGCAG.................................................................................................2111.001.00-------------------------------------------------1.00-------------
................................................................................................................................................................................TTACAGATGTGACTCTTTCCTCAT..................................................2411.0020.00--------------1.00------------------------------------------------
..............................................................................................................................................................................GCTTACAGATGTGACTCTTTC.......................................................2111.001.00---------------------------------1.00-----------------------------
.....................................................................................AGATGGTGCCTTGGTTAGTGCCTCGG...........................................................................................................................................261.000.00--------------------------------------1.00------------------------
................................................................................................................................................................................TTACAGATGTGACTCTTCCTC.....................................................211.000.001.00--------------------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTC...........................................................1911.001.00------------------------------1.00--------------------------------
..................................................................CTTTATCGTGATGTAAAGAAGATGGTG.............................................................................................................................................................2711.001.00-----------------------------------1.00---------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGACTCTT.........................................................2211.001.00---------------1.00-----------------------------------------------
................................................................................................................................................................................TTACAGATGTGACTCTTTCTTCA...................................................231.000.001.00--------------------------------------------------------------
..GTTATTTCAGCTGTGATGA.....................................................................................................................................................................................................................................1911.001.00-----------------------------1.00---------------------------------
............................GTTTTGTTGAACTTAAAAGAGCC.......................................................................................................................................................................................................2311.001.00----------------------------------1.00----------------------------
.................................................................................................................................TCCAGGAGAAAGTACATCAGGC...................................................................................................2211.001.00-----------1.00---------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGACTCTTTCCCCAG..................................................2811.003.00-----------------------------------------------1.00---------------
..........................................................................................................................................................GGTGTAAATGCTGGTCCATGGCT.........................................................................2311.001.00----------------------------------------------------1.00----------
....................................................................................................................AGGATTTTGTGATTCCAGGAGAAAGTATC.........................................................................................................291.000.00--------------------1.00------------------------------------------
.....................................................................TATCGTGATGTAAAGAAGATGGTGCCTTGG.......................................................................................................................................................3011.001.00------------------------------------------1.00--------------------
...................................................................................................................................CAGGAGAAAGTACATCAGGCAGTG...............................................................................................2411.001.00---1.00-----------------------------------------------------------
............................................................................................................................................................................TGGCTTACAGATGTGAC.............................................................1711.001.00----------1.00----------------------------------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGACTCTTTCCT.....................................................2611.001.00---------1.00-----------------------------------------------------
........................................................................................................................................................................................................GTTCATTCCGACAGGACCACCCCAG.........................2511.001.00------1.00--------------------------------------------------------
................................................................................................................................................................................................................CGACAGGACCACCCCAGTAGCATGG.................2511.001.00-------------------1.00-------------------------------------------
.......................................................................................................................................AGAAAGTACATCAGGCAGTGG..............................................................................................2111.001.00-------1.00-------------------------------------------------------
..................................................................CTTTATCGTGATGTAAA.......................................................................................................................................................................1711.001.00---------------------------------------1.00-----------------------
..............................................................................................................................................................................................................TCCGACAGGACCACCC............................1611.001.00------------------------1.00--------------------------------------
..........................................................................................................................................................................CATGGCTTACAGATGTGACTCT..........................................................2211.001.00-------------------------------------------1.00-------------------
...................................................................................................................................................................GCTGGTCCATGGCTTACAGATGTGACTCTTTCC......................................................3311.001.00---------------------1.00-----------------------------------------
........................................................................................................................................................................TCCATGGCTTACAGATGTGAC.............................................................2111.001.00-------------------1.00-------------------------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGAC.............................................................1811.001.00--------------------------------1.00------------------------------
.................................................................................................................................................................................TACAGATGTGACTCTTTTCCA....................................................211.000.001.00--------------------------------------------------------------
............................................................................................................................................................................................................ATTCCGACAGGACCACCCCAGCAGC.....................251.000.00------1.00--------------------------------------------------------
...........................................................................................................................................................................ATGGCTTACAGATGTGACT............................................................1911.001.00-------1.00-------------------------------------------------------
....................................................................................................................................................................CTGGTCCATGGCTTACAGATGTGA..............................................................2411.001.00-------------------------------------------------------1.00-------
....................................................................................................................................AGGAGAAAGTACATCAGGCAGTG...............................................................................................2311.001.00------------------------------------------------1.00--------------
.....................................................................................................................................................................................................................................ATGGGTGTTTATGGGCAGG..1920.500.50-------------------------------------------------------------0.50-
............................................................................................................................................................................................................................CCCAGTAGCATGGGTGTTTATGGGCAG...2720.500.50--------------------0.50------------------------------------------
..................................................................................................................................................................................................................ACAGGACCACCCCAGTAGCATGGG................2420.500.50------0.50--------------------------------------------------------
..........................................................................................................................................................................................................................ACCCCAGTAGCATGG.................1530.330.33---------0.33-----------------------------------------------------
..................................................................................................................................................................................................................ACAGGACCACCCCAG.........................1550.200.20--------------------------------------------------------------0.20

Antisense strand
AGGTTATTTCAGCTGTGATGATCCAGCAGTTTTGTTGAACTTAAAAGAGCCTACCTATTAAGGATGCTTTATCGTGATGTAAAGAAGATGGTGCCTTGGTTAGTGCCTTGGAATTGAGGATTTTGTGATTCCAGGAGAAAGTACATCAGGCAGTGGTGTAAATGCTGGTCCATGGCTTACAGATGTGACTCTTTCCTCAGGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAG
....................................................................................................................................((((((.((((((((((((.((((.((....))....)))).))))...)))))).)).)))))).....................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................................................................................................................TCTTTCCTCAGGTTCATTCC......................................... 201.000.00--------------------------------------------------1.00------------
.............................................................................................................................................................................................TCTTTCCTCAGGTTCATCA.......................................... 191.000.00----------------------------------------1.00----------------------
....................................................................................................................................................................................................................AGGACCACCCCAGTATC..................... 171.000.00------------------------------------------------------------1.00--