ID: uc003ael.2_intron_7_0_chr22_29536355_f.3p
GENE: (8)
chr22:29537732-29537981+


(5)
BRAIN
(9)
BREAST
(7)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(2)
RRP40.ip
(10)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CCCTGCTGCACTTGGCCTCAGCCCCTGCTGCCCACAGGCCACATTTCAGTTGCACGCTAGTCCTTCAGATCTTTAGAGGTGGCTGTGAGGTCCTTCCCAAGACCTTGCCCCACCCCATTTCATAGATACAGTATCTCGTGAGATGGTAGGTTGTTTGCGTTGTTCTAATCTATTGGAAAAAATATTTATCTGCTTGACAGATCCCATCGTGTTCCTGCTTCAGGGGACCTTAGGGATTGTCATCAACCAG
...................................................................(((((.....(((((..((((((((........)))))))).)))))((((((((((((((...))))).))))))))).)))))..................................................................................................
................................................................65...............................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040012(GSM532897)
G648N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..........................................................................................................................................TGAGATGGTAGGTTGTATAG............................................................................................2013.000.006.00-1.00--1.00----1.001.00--------1.00-----------------------1.00-----1.00----
..........................................................................................................................................TGAGATGGTAGGTTGTAT..............................................................................................185.000.00--1.001.00---------------1.00---1.00---1.00---------------------------
.............................................................................................................................................................................................................................AGGGGACCTTAGGGATTGTCA........2114.004.00-4.00-----------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTATAT............................................................................................203.000.002.00------------------------------------------------1.00-----
..........................................................................................................................................TGAGATGGTAGGTTGTTTAGTT..........................................................................................223.000.00----------1.00-1.00-------------1.00----------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTATGG............................................................................................202.000.00----1.00----------------------------------1.00---------------
..........................................................................................................................................TGAGATGGTAGGTTGTGTGG............................................................................................202.000.00------1.00---------------------------------1.00--------------
.....................................................................TCTTTAGAGGTGGCTGTGAG.................................................................................................................................................................2012.002.00-------2.00-----------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTGTAA............................................................................................202.000.00-----1.00---------------------------1.00---------------------
........CACTTGGCCTCAGCCCCTGCTGCC..........................................................................................................................................................................................................................2411.001.00--------------------------------1.00----------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTGTTT..........................................................................................221.000.00-----------------------------1.00-------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTTG............................................................................................201.000.001.00------------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTGTGT............................................................................................201.000.00-----------1.00-------------------------------------------
.............................................................................................................................................................................................................................AGGGGACCTTAGGGATTGTCAT.......2211.001.00-----------------------------------------------1.00-------
.......................................................................................................................................................................................................................TGCTTCAGGGGACCTTAG.................1811.001.00------------------------1.00------------------------------
...........................................................................................................................AGATACAGTATCTCGTGGGGT..........................................................................................................211.000.00----------------------------1.00--------------------------
...........................................................................................................................AGATACAGTATCTCGTGGGTA..........................................................................................................211.000.00---------------------1.00---------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGGA...............................................................................................171.000.00---------1.00---------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTGGTT..........................................................................................221.000.00--------------------------------------1.00----------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTATTT..........................................................................................221.000.00----------------------------------------------1.00--------
..............................................................................................................................................ATGGTAGGTTGTTTGTAG..........................................................................................181.000.00----------------------------------------------------1.00--
..........................................................................................................................................TGAGATGGTAGGTTGAAT..............................................................................................181.000.00---------1.00---------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTGTTG............................................................................................201.000.00------------1.00------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTG...............................................................................................171.000.00-----------------------------------------1.00-------------
..........................................................................................................................................TGAGATGGTAGGTTGTTGGTT...........................................................................................211.000.00-----------------------------------1.00-------------------
..........................................................................................................................................TGAGATGGTAGGTTGTCTTT............................................................................................201.000.00------1.00------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTAAAA............................................................................................201.000.00----------------------------------1.00--------------------
.....................................................................TCTTTAGAGGTGGCTGTGA..................................................................................................................................................................1911.001.00---------------------------------------------1.00---------
.............................................................................................................................................................................................................................AGGGGACCTTAGGGATTGTCATCAAC...2611.001.00--1.00----------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTGGTTA.........................................................................................231.000.00----1.00--------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTATT...........................................................................................211.000.00---1.00---------------------------------------------------
..........................................................................................................................................................................................................................TTCAGGGGACCTTAGG................1611.001.00------------------------------------------------1.00------
..........................................................................................................................................TGAGATGGTAGGTTGATTA.............................................................................................191.000.001.00------------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTGTG.............................................................................................191.000.00------------------------------1.00------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTAG............................................................................................201.000.001.00------------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTCTCG............................................................................................201.000.001.00------------------------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTTGGT..........................................................................................221.000.00-----------------------------------------------------1.00-
.............................................................................................................................................................................................................ATCGTGTTCCTGCTTCA............................1711.001.00--------------1.00----------------------------------------
...............................................................................................................................................................................................................CGTGTTCCTGCTTCAGGG.........................1811.001.00-------------1.00-----------------------------------------
......................................................................................................................................................................................................................CTGCTTCAGGGGACCTGGT.................191.000.00----------------1.00--------------------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTTGTT..........................................................................................221.000.00----------------------1.00--------------------------------
...........................................................................................................................................GAGATGGTAGGTTGTTTGGTTA.........................................................................................221.000.00-------------------------1.00-----------------------------
..........................................................................................................................................TGAGATGGTAGGTTGTTTGGG...........................................................................................211.000.00---1.00---------------------------------------------------

Antisense strand
CCCTGCTGCACTTGGCCTCAGCCCCTGCTGCCCACAGGCCACATTTCAGTTGCACGCTAGTCCTTCAGATCTTTAGAGGTGGCTGTGAGGTCCTTCCCAAGACCTTGCCCCACCCCATTTCATAGATACAGTATCTCGTGAGATGGTAGGTTGTTTGCGTTGTTCTAATCTATTGGAAAAAATATTTATCTGCTTGACAGATCCCATCGTGTTCCTGCTTCAGGGGACCTTAGGGATTGTCATCAACCAG
...................................................................(((((.....(((((..((((((((........)))))))).)))))((((((((((((((...))))).))))))))).)))))..................................................................................................
................................................................65...............................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040012(GSM532897)
G648N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.................................................................................................................................................GTAGGTTGTTTGCGTTTAC...................................................................................... 193.000.00--------2.00------1.00---------------------------------------
.........................................................TAGTCCTTCAGATCTTTAGT............................................................................................................................................................................. 201.000.00-------------------------------1.00-----------------------
................................................................................GGCTGTGAGGTCCTTTATT....................................................................................................................................................... 191.000.001.00------------------------------------------------------
........................CTGCTGCCCACAGGCCATGA.............................................................................................................................................................................................................. 201.000.00-------------------------------------------1.00-----------
..................................................................................................................................................................................................................GTTCCTGCTTCAGGGCAG...................... 181.000.00------------------------------------1.00------------------
...........................................................................................CCTTCCCAAGACCTTGCT............................................................................................................................................. 181.000.00------------------------------------------1.00------------
...........................................................................................CCTTCCCAAGACCTTGC.............................................................................................................................................. 171.000.00-----------------1.00-------------------------------------
......................................................................................................................................................TTGTTTGCGTTGTTCTAAC................................................................................. 191.000.00------------------1.00------------------------------------
.......................................CACATTTCAGTTGCACGCTAGTCCTTCAGAAA................................................................................................................................................................................... 321.000.00-------------------------------------1.00-----------------
..................................................................................................................................................................................................................GTTCCTGCTTCAGGGCAGA..................... 191.000.00---------------------------------------------------1.00---
..............................................................................................................................................................................................TGGGATCTGTCAAGCA............................................ 1630.330.33------------------------------------------------------0.33
..........................................................AAAGATCTGAAGGACT................................................................................................................................................................................ 1680.120.12-------------0.12-----------------------------------------