ID: uc003adb.1_intron_3_0_chr22_27063274_f.3p
GENE: (4)
chr22:27063921-27064170+


(1)
AGO2.ip
(1)
BRAIN
(1)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(5)
HEART
(3)
OTHER
(21)
SKIN

Sense strand
ACTGTGCCTGGCCTAAGTTTCTTCTAAAAATGTTTCATGTCCAAAACCCTCACTTCCACCCTGTGTGTGTGCTGGGGGCATGAGAGACTGGGGGGATCTCTGAACATGAGTCCCCTCAGATGCAGAATTAGGCTGGGGGGATGTGGGAAGTTGGGGATGGAGGCTGTGGCCTCATCCTCACTCGCTGTCTTCTCCCCCAGGTGGCTCCATCTGGGCCGCATCTCCAGGACTCCTGGCCTGGACTTCTCTT
.......................................................................................(((((((((.(((.......))))))))))))...(((.......))).............((.(((((((.(((((....))))))))))))))....................................................................
.....................................................................................86..............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................GGGGGATCTCTGAACTCTG.............................................................................................................................................1947.000.0012.00-7.004.002.002.003.00-1.00---2.00-2.002.002.001.00-1.001.00-1.00---1.00------1.001.00-1.00------
.........................................................................................GGGGGGATCTCTGAACTCTG.............................................................................................................................................2010.000.001.00--2.002.00---1.00--2.00------1.00-------------1.00----------
...............................................................................................................................................................GAGGCTGTGGCCTCAGAAT........................................................................198.000.00-6.00-------------------1.00----------------1.00----
....................................................................................................................CAGATGCAGAATTAGGGTT...................................................................................................................192.000.00-------2.00-----------------------------------
..............................................................................................................................................................GGAGGCTGTGGCCTCAGAAT........................................................................202.000.00-2.00-----------------------------------------
.CTGTGCCTGGCCTAAGGAGC.....................................................................................................................................................................................................................................201.000.00------------------------------1.00------------
......................................................................................ACTGGGGGGATCTCTGGCC.................................................................................................................................................191.000.00-------------------------------1.00-----------
....................................................................................................................CAGATGCAGAATTAGGGT....................................................................................................................181.000.00-----------------------1.00-------------------
.............................................................................................................................AATTAGGCTGGGGGGTGAA..........................................................................................................191.000.00-----------------------------1.00-------------
...............................................................................................................CCCCTCAGATGCAGAATTAGGC.....................................................................................................................2211.001.00-----1.00-------------------------------------
............................................................................................................................................................................CATCCTCACTCGCTGTCTTCTCCCC.....................................................2511.001.00----------1.00--------------------------------
...............................................................................................................................................................................................................CATCTGGGCCGCATC............................1521.001.00---------------------------1.00---------------
................................................................................................................................................................................CTCACTCGCTGTCTTCTCCCCCAG..................................................2411.001.00----------------------------1.00--------------
...............................................................................................................................................................GAGGCTGTGGCCTCATAAT........................................................................191.000.00-1.00-----------------------------------------
....................................................................................................................CAGATGCAGAATTAGGGTTA..................................................................................................................201.000.00-------------------------------------1.00-----
................................................................................................................................................GGGAAGTTGGGGATGGAGG.......................................................................................1911.001.00-------------1.00-----------------------------
.............................................................TGTGTGTGTGCTGGGGGCATGAGAGACTGGGG.............................................................................................................................................................3211.001.00----------1.00--------------------------------
......................................................................................................................................GGGGGGATGTGGGAAGGCCA................................................................................................201.000.00---------1.00---------------------------------
.....................................................................................................................AGATGCAGAATTAGGGTT...................................................................................................................181.000.00-------1.00-----------------------------------

Antisense strand
ACTGTGCCTGGCCTAAGTTTCTTCTAAAAATGTTTCATGTCCAAAACCCTCACTTCCACCCTGTGTGTGTGCTGGGGGCATGAGAGACTGGGGGGATCTCTGAACATGAGTCCCCTCAGATGCAGAATTAGGCTGGGGGGATGTGGGAAGTTGGGGATGGAGGCTGTGGCCTCATCCTCACTCGCTGTCTTCTCCCCCAGGTGGCTCCATCTGGGCCGCATCTCCAGGACTCCTGGCCTGGACTTCTCTT
.......................................................................................(((((((((.(((.......))))))))))))...(((.......))).............((.(((((((.(((((....))))))))))))))....................................................................
.....................................................................................86..............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................CAGATGCAGAATTAGGT..................................................................................................................... 171.000.00-------------------------1.00-----------------
..........................................................................................GGGGGATCTCTGAACT................................................................................................................................................ 161.000.00-----1.00-------------------------------------
..............................................CCCTCACTTCCACCCTGAG......................................................................................................................................................................................... 191.000.00------------------------1.00------------------
..............................................CCCTCACTTCCACCCTGGGGC....................................................................................................................................................................................... 211.000.00-----------------------------------1.00-------
.........................................................................................................................................................................CCTCATCCTCACTCGCTATG............................................................. 201.000.00-------------1.00-----------------------------
.........................................................................................................................................GGGATGTGGGAAGTTAG................................................................................................ 171.000.00---------1.00---------------------------------
.......................................................................................................................................................................................CTGGGGGAGAAGACAGC.................................................. 1730.670.67---------------------------------------0.330.33--
.......................................................................................................................................................................................CCTGGGGGAGAAGACAGC................................................. 1820.500.50--------0.50----------------------------------
.......................................................................................................................................................................................TGGGGGAGAAGACAGC................................................... 1650.200.20-----------------------------------------0.20-
.......................................................................................................................................................................................GGGGGAGAAGACAGC.................................................... 1580.120.12------------------------------------------0.12