ID: uc003acs.2_intron_12_0_chr22_26906669_r
GENE: TFIP11(3)
chr22:26906619-26907134-


(2)
AGO2.ip 		(2)
BRAIN 		(12)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CTCCTTGCTCCTCAGCCTGCAGACAGCCTATTGTGGGACCTTTTGATCGTGTGAGTTAATAGTTAATAAGCTCCCCTTTATATATGTATGTCTATTCCATTAGTTATGTCGCTCTAGAGAACCCTGACTAATACAATGATTAACCTAATCATGGGACTAAAGTAGAAGCTATCGTTTCTTGAGCACTTATTTTGAACTCATTGAATTTGCTTTGTAAGCCTTCTCTAAGGTTGGTATGGTAGTTAATCCCAATTTAAGAAAGACAACTGAATCTGGTCACCCAGCTACTGTGAGGTAGATTCTCTATATCAATCTCTGGACATCTGACTATTAAAATAGTGTTCATAATTACTACAGTCTTTCAGTTCATCAGAAGAAATTCATGTTTTGTGAGGAAAACTGAAAATTTTGTTTCATCAAGTAATGTATTTCAAAAAGCATATTCTAAAAAAAATCACTCTCCTAGGACCACCAAGGATCCAGATATAATTCTTTCCTCAGTAATAGAAAAAAGAA
....................................................................................................................................................................................................(((((((((((((((.((..((((((....))))))..)).)))))...............(((((((.........((((((.((((......(((.((((.....)))).)))....)))).....))))))......(((((........)))))..))))))).)))))...(((....))).......)))))..........................................................................................................................
...........................................................................................................................................................................................188............................................................................................................................................................................................................395.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGA.............................................................................................................................21171.0047.0032.0010.004.001.003.002.002.003.001.00-3.00--1.00-2.00---2.00------1.001.00------1.001.00---------1.00-----
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTG..............................................................................................................................20147.0047.0046.00------------1.00-------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGAA............................................................................................................................22113.0047.00---4.002.001.001.001.00----1.00--------1.00--1.001.00-------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGT.............................................................................................................................2116.006.002.00------------1.00-------------------1.00--1.001.00-------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTAG..............................................................................................................................206.000.006.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTA..............................................................................................................................2014.003.003.00----------------------------------------------1.00---
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTTA.............................................................................................................................2114.003.00-----2.002.00--------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTT...............................................................................................................................1913.003.00--2.00--------1.00---------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGAAA...........................................................................................................................2313.0047.00-2.00-1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAGTAATAGAAAAAAGA.2112.002.00------------------2.00--------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTAA.............................................................................................................................2112.003.001.00--------------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTCG..............................................................................................................................202.000.001.00-1.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTGTGA.............................................................................................................................212.000.00-1.00-1.00-----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTGG..............................................................................................................................201.000.00--1.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGGTGA...............................................................................................................................191.000.00--------------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTGTG..............................................................................................................................201.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGAAT...........................................................................................................................2311.0047.00-1.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTC..............................................................................................................................2011.003.00--1.00------------------------------------------------
................................................................................................................................................................................................TGAACTCATTGAATTTGCT.................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------1.00------------
.............................................................................................................................................................................................TTTTGAACTCATTGAATTT....................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------------------1.00----
.................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGAGGAAAACTGAAAATTTTGTT.......................................................................................................2811.001.00----------------1.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGC.............................................................................................................................2111.0047.001.00--------------------------------------------------
......................................................................................................................................................................................GCACTTATTTTGAACTCTG...........................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGAAAATTTTCGTC......................................................................................................191.000.00------------------------------------------1.00--------
.....TGCTCCTCAGCCTGCAGACAGCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00---------1.00-----------------------------------------
...................................................................................................................................................................................................................................................................AAGACAACTGAATCTGGTCACCCAGCTACTG..................................................................................................................................................................................................................................3111.001.00---------1.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTATTG..............................................................................................................................201.000.001.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................CCCAGCTACTGTGAGTA............................................................................................................................................................................................................................171.000.00-------------------------------------------1.00-------
...........................................................................................................................................................................................TATTTTGAACTCATTGAATTT....................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------1.00-------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTTAA............................................................................................................................2211.003.00------------1.00--------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTAGA.............................................................................................................................211.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGCCGA...............................................................................................................................191.000.001.00--------------------------------------------------
...........................................................................................................................................................................TCGTTTCTTGAGCACTTTACA....................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTGT..............................................................................................................................201.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGG.............................................................................................................................2111.0047.001.00--------------------------------------------------
..................................................................................................................................................................................................................................AAGGTTGGTATGGTAGTTAATC............................................................................................................................................................................................................................................................................2211.001.00----------------------------------------1.00----------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTGCA............................................................................................................................2211.0047.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTCTG..............................................................................................................................201.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTCTGA.............................................................................................................................211.000.00--------------1.00------------------------------------
............................................................AGTTAATAAGCTCCCCTTTATATATGTATGTCTATTCCATTAGTTATGTCGCTCTAGAGAACCCTGACTAATACAATGATTAACCTAA................................................................................................................................................................................................................................................................................................................................................................................8811.001.00------------------------------------------------1.00--
......................................................................................................................................................................AGCTATCGTTTCTTGAGCACTT........................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------1.00---------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTT..............................................................................................................................2011.003.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTCGA.............................................................................................................................211.000.001.00--------------------------------------------------
..................................................................................................................TAGAGAACCCTGACTGGC................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------1.00-----------
................................................................................................................................................................................................................................................................................................TGTGAGGTAGATTCTCTG..................................................................................................................................................................................................................181.000.00--------------------------------1.00------------------
...............................................................................................................CTCTAGAGAACCCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------1.00---------------------------------
..........................................................................................................................................ATTAACCTAATCATGGGACTAAAGTAGAAGC...........................................................................................................................................................................................................................................................................................................................................................3111.001.00----------------------1.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTATG..............................................................................................................................201.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTCTAG..............................................................................................................................201.000.001.00--------------------------------------------------
...............................................................................................................................................................AAGTAGAAGCTATCGTTTCTTGAGCACT.........................................................................................................................................................................................................................................................................................................................................2811.001.00---------1.00-----------------------------------------
.................................................................................................................................................TAATCATGGGACTAAAGTAGAAGC...........................................................................................................................................................................................................................................................................................................................................................2411.001.00-----------------1.00---------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTGTC..............................................................................................................................201.000.001.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTTTTAAT...........................................................................................................................2311.003.00-1.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAATTCATGTTG................................................................................................................................181.000.001.00--------------------------------------------------
...................................................................................................................................................................................TGAGCACTTATTTTGAAC...............................................................................................................................................................................................................................................................................................................................1820.500.50--------------------------------------------------0.50
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAATAGAAAAAAGA.1820.500.50-------------------------------------------------0.50-

Antisense strand
CTCCTTGCTCCTCAGCCTGCAGACAGCCTATTGTGGGACCTTTTGATCGTGTGAGTTAATAGTTAATAAGCTCCCCTTTATATATGTATGTCTATTCCATTAGTTATGTCGCTCTAGAGAACCCTGACTAATACAATGATTAACCTAATCATGGGACTAAAGTAGAAGCTATCGTTTCTTGAGCACTTATTTTGAACTCATTGAATTTGCTTTGTAAGCCTTCTCTAAGGTTGGTATGGTAGTTAATCCCAATTTAAGAAAGACAACTGAATCTGGTCACCCAGCTACTGTGAGGTAGATTCTCTATATCAATCTCTGGACATCTGACTATTAAAATAGTGTTCATAATTACTACAGTCTTTCAGTTCATCAGAAGAAATTCATGTTTTGTGAGGAAAACTGAAAATTTTGTTTCATCAAGTAATGTATTTCAAAAAGCATATTCTAAAAAAAATCACTCTCCTAGGACCACCAAGGATCCAGATATAATTCTTTCCTCAGTAATAGAAAAAAGAA
....................................................................................................................................................................................................(((((((((((((((.((..((((((....))))))..)).)))))...............(((((((.........((((((.((((......(((.((((.....)))).)))....)))).....))))))......(((((........)))))..))))))).)))))...(((....))).......)))))..........................................................................................................................
...........................................................................................................................................................................................188............................................................................................................................................................................................................395.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................GGGACCTTTTGATCGTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1913.000.00-3.00-1.002.00---3.00--2.001.00----------1.00---------------------------
....................................................................................................................................................................................................................................................................................................................................................GTTCATAATTACTACTCTG............................................................................................................................................................. 193.000.00--------------------1.00-------1.00---------------1.00------
..................................GGGACCTTTTGATCGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00-1.00-------------------------------------------------
...................................................................................................................................TACAATGATTAACCTAAAAGC............................................................................................................................................................................................................................................................................................................................................................................ 211.000.001.00--------------------------------------------------
...............CCTGCAGACAGCCTAGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00----------------1.00----------------------------------
..............................................................................................................GCTCTAGAGAACCCTGACTAATATCTG........................................................................................................................................................................................................................................................................................................................................................................................... 271.000.00------------------------------1.00--------------------