ID: uc002zzn.1_intron_9_0_chr22_24582384_f.3p
GENE: SUSD2(10)
chr22:24582970-24583219+


(3)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(5)
CELL-LINE 		(21)
CERVIX 		(1)
HEART 		(2)
OTHER 		(33)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTGCCGCTGGGAGTTCCACCGCAAGCATGGCAGGGGTGGCGGAGGGTCATGGTCAGCAGAATTGGCCCCGGGAACGCCCTCCCTTCCCCTGCAGGTGCCCTCACCCACAGCCCCTGGGTGCCGACCACCCTGTCCTGGGGCTGCGGGAGGGGACAAGATGCTCACAGCGGGTGACCCTAATGCATCCCCCTTGAGCCCAGGAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCCATCATGCTGGCA
.....................................................................((((......))))..((((((((.((.((((..(((.(((((((.(((((.....)))))......))))))).))))))).))....)))....)).)))...............................................................................
....................................................................69....................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM532882(GSM532882)
G696T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040007(GSM532892)
G601T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.........................................................................ACGCCCTCCCTTCCCCCGC..............................................................................................................................................................1933.000.0018.003.002.00--2.001.00--1.00-1.00---1.001.00---1.00--------------1.00---------1.00-----------------------------
.........................................................................ACGCCCTCCCTTCCCCCG...............................................................................................................................................................1823.000.0010.003.002.002.001.001.002.00---1.00---------------------1.00------------------------------------------
.........................................................................ACGCCCTCCCTTCCCCCGCC.............................................................................................................................................................2018.000.0011.002.001.001.001.00--------1.00--------1.00----------------------------------------------------
..........................................................................CGCCCTCCCTTCCCCTGC..............................................................................................................................................................18212.0012.00------------1.000.50---1.00-0.50-1.00---------------0.50---------1.00--0.500.50-0.500.50-0.500.500.50---0.500.500.500.500.500.50-------
..........................................................................CGCCCTCCCTTCCCCTGCCG............................................................................................................................................................2024.5012.00-------1.50-----------0.50--------1.00--------------------------0.50---0.500.50--------------
...........................................................................GCCCTCCCTTCCCCTGCCGCC..........................................................................................................................................................212.000.00------------------------------------1.00---------1.00----------------------------
........................................................................AACGCCCTCCCTTCCCCCGC..............................................................................................................................................................202.000.00--------------2.00------------------------------------------------------------
........................................................................AACGCCCTCCCTTCCCCC................................................................................................................................................................182.000.00----1.00-------------1.00--------------------------------------------------------
..........................................................................CGCCCTCCCTTCCCCTGCC.............................................................................................................................................................1922.0012.00---------------0.50-0.50-----------0.50-------------------0.50-------------------------
..........................................................................CGCCCTCCCTTCCCCTGCCGCC..........................................................................................................................................................2221.5012.00----------------0.50--------------------0.50--------------0.50----------------------
......................................................................................................................................................GGACAAGATGCTCACAG...................................................................................1711.001.00--------------------------------------------1.00------------------------------
...........................................................................GCCCTCCCTTCCCCTGCCGC...........................................................................................................................................................201.000.00-------1.00-------------------------------------------------------------------
.TGCCGCTGGGAGTTCCACCGCAAGCATGGA...........................................................................................................................................................................................................................301.000.00---------------------------------------1.00-----------------------------------
......................................................................GGAACGCCCTCCCTTCCC..................................................................................................................................................................1811.001.00-----------------------1.00---------------------------------------------------
............................................................................................................................................CTGCGGGAGGGGACAAGATGCTCTG.....................................................................................251.000.00------------1.00--------------------------------------------------------------
...........................................................................................................................................................................................................................TGCCGGGGACAGGGTCAGC............191.000.00---------------------------------1.00-----------------------------------------
...........................................................................GCCCTCCCTTCCCCTGCCG............................................................................................................................................................191.000.00----------------------------------------1.00----------------------------------
.........................................................................ACGCCCTCCCTTCCCCCCC..............................................................................................................................................................191.000.00------------------------------1.00--------------------------------------------
..........................................................................CGCCCTCCCTTCCCCTGCCGC...........................................................................................................................................................2121.0012.00-------------0.50---------------0.50---------------------------------------------
.........................................................................ACGCCCTCCCTTCCCCCGT..............................................................................................................................................................191.000.001.00--------------------------------------------------------------------------
..........................................................................................................ACAGCCCCTGGGTGCCCGG.............................................................................................................................191.000.00--------1.00------------------------------------------------------------------
..........................................................................................................................................................AAGATGCTCACAGCGGGTGACC..........................................................................2211.001.00-----------1.00---------------------------------------------------------------
.........................................................................ACGCCCTCCCTTCCCCCC...............................................................................................................................................................181.000.00---------1.00-----------------------------------------------------------------
....................................................................................................................................TCCTGGGGCTGCGGGAGGGGTTT...............................................................................................231.000.00-----------------------------------------1.00---------------------------------
.........................................................................ACGCCCTCCCTTCCCCCAC..............................................................................................................................................................191.000.00----------1.00----------------------------------------------------------------
........................................................................AACGCCCTCCCTTCCCCCGCC.............................................................................................................................................................211.000.00------------------------------------------1.00--------------------------------
..........................................................................CGCCCTCCCTTCCCCT................................................................................................................................................................1660.500.50---------------0.17--------------------------------------------------------0.170.17-
..........................................................................CGCCCTCCCTTCCCCTG...............................................................................................................................................................1750.400.40--------------------------------------------------------------------0.200.20-----
..........................................................................CGCCCTCCCTTCCCCTGTC.............................................................................................................................................................1950.200.40----------------------------------------------------------------------0.20----
........................GCATGGCAGGGGTGGC..................................................................................................................................................................................................................1650.200.20-----------------------------------------------------------------------0.20---
.........................................................................ACGCCCTCCCTTCCC..................................................................................................................................................................1590.110.11--------------------------------------------------------------------------0.11

Antisense strand
GTGCCGCTGGGAGTTCCACCGCAAGCATGGCAGGGGTGGCGGAGGGTCATGGTCAGCAGAATTGGCCCCGGGAACGCCCTCCCTTCCCCTGCAGGTGCCCTCACCCACAGCCCCTGGGTGCCGACCACCCTGTCCTGGGGCTGCGGGAGGGGACAAGATGCTCACAGCGGGTGACCCTAATGCATCCCCCTTGAGCCCAGGAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCCATCATGCTGGCA
.....................................................................((((......))))..((((((((.((.((((..(((.(((((((.(((((.....)))))......))))))).))))))).))....)))....)).)))...............................................................................
....................................................................69....................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM532882(GSM532882)
G696T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040007(GSM532892)
G601T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.........................................................................................................................................................................................CCCCCTTGAGCCCAGGACTC............................................. 201.000.00-------------------------------1.00-------------------------------------------
...............................................................................................................................................................................CCTAATGCATCCCCCATAA........................................................ 191.000.00------------------------1.00--------------------------------------------------
..............................................................................................................................ACCCTGTCCTGGGGCAGAG......................................................................................................... 191.000.00--------------------------------------1.00------------------------------------
...........................................................................................................................................GCTGCGGGAGGGGACATCG............................................................................................ 191.000.00--------1.00------------------------------------------------------------------
.....................................................................................................................................................................................................................GGTGGCTGCCGGGGACCC................... 181.000.00---------------------------1.00-----------------------------------------------
...........................................................................................CAGGTGCCCTCACCCATGGT........................................................................................................................................... 201.000.00--------------------------1.00------------------------------------------------
......................................................................GGAACGCCCTCCCTTCA................................................................................................................................................................... 171.000.00----------------------------------1.00----------------------------------------
........................................................................AACGCCCTCCCTTCCCGA................................................................................................................................................................ 181.000.00---1.00-----------------------------------------------------------------------
..............................................................................................CCCAGGGGCTGTGGGTGAGGGCAC.................................................................................................................................... 2411.001.00-------------------------1.00-------------------------------------------------
....................................................................................................TCACCCACAGCCCCTGGGTA.................................................................................................................................. 201.000.00------------------------------------------------1.00--------------------------
..........GAGTTCCACCGCAAGCTG.............................................................................................................................................................................................................................. 181.000.00-------------------------------------------1.00-------------------------------
...........................................................................CTGCAGGGGAAGGGAGGGC............................................................................................................................................................ 1920.500.50-------------------------------------------------------------0.50-------------