ID: uc002zzn.1_intron_11_0_chr22_24583812_f
GENE: SUSD2(12)
chr22:24583762-24583976+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(9)
SKIN

Sense strand
TCGGGTGGCCCACCAGCTGCACCAGCGTCGCATGCAGAGCCTGCAGCCAGGTGAGGGCGGGCAGGTGGGGGTGGGCGGGGAGCTGGGACAGGACCCCCCGGGGTGGCCAGATGTGTGTATGCATGGCAGCTCAGGCCTGTTGTCTGCACTCTGTCCCCATCCCAGTGGTGTCCTGTGGCTGGCTGGCCCCACCTCCCAACGGACAAAAGGAGGGC
...................................................................(((((((((((((.((.((((((((.((.....((((.((((..(((......))))))).)))).)))))))).)).)).)))))..))))))))....................................................
..................................................................67................................................................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786TAX577453(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAGT.................................................24118.0018.0012.00-1.001.00-----1.00------------1.00----1.00--1.00-------
...............................................................................................................................................CTGCACTCTGTCCCCATCCCAGT.................................................2319.009.00---1.00----2.00-1.00-2.00---1.00-----------------1.00-1.00-
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAG..................................................2317.007.002.00-1.00-1.001.001.00-------------------------1.00-----
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAGA.................................................2417.007.001.00-1.00---1.00------2.00------1.00-------1.00---------
....................................................................................................................................................................................................CAACGGACAAAAGGATC..176.000.00-6.00------------------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAGTA................................................2515.0018.004.00----1.00--------------------------------
...............................................................................................................................................CTGCACTCTGTCCCCATCCCAG..................................................2215.005.00---1.00-1.00----1.00----------------------1.00-1.00--
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCATT.................................................2412.001.001.00-------------------------1.00-----------
...............................................................................................................................................CTGCACTCTGTCCCCATCCCAGA.................................................2311.005.00------1.00-------------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAGC.................................................2411.007.00-----------1.00--------------------------
........................GCGTCGCATGCAGAGCC..............................................................................................................................................................................1711.001.00-------------------1.00------------------
...............................................................................................................................................CTGCACTCTGTCCCCATCCCAGTG................................................2411.001.00----1.00---------------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCACT.................................................2411.001.00---------1.00----------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCAGT......................................................191.000.00-----------1.00--------------------------
..................................................................................................................................................CACTCTGTCCCCATCCCAG..................................................1911.001.00-------1.00------------------------------
.......................................................................TGGGCGGGGAGCTGGTAT..............................................................................................................................181.000.00------------------------1.00-------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCA...................................................2211.001.00-------------------------------1.00------
.............................................................................................................................................................................TGTGGCTGGCTGGCCTGG........................181.000.00---------------1.00----------------------
...................................................................................................................................................................................................CCAACGGACAAAAGGAGG..1811.001.00-------1.00------------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCC....................................................2111.001.00--1.00-----------------------------------
....................................................................................................................................................................................................CAACGGACAAAAGGAGGGC1911.001.00-------1.00------------------------------
..............................................................................................................................................TCTGCACTCTGTCCCCATCCCAGGA................................................2511.007.001.00-------------------------------------

Antisense strand
TCGGGTGGCCCACCAGCTGCACCAGCGTCGCATGCAGAGCCTGCAGCCAGGTGAGGGCGGGCAGGTGGGGGTGGGCGGGGAGCTGGGACAGGACCCCCCGGGGTGGCCAGATGTGTGTATGCATGGCAGCTCAGGCCTGTTGTCTGCACTCTGTCCCCATCCCAGTGGTGTCCTGTGGCTGGCTGGCCCCACCTCCCAACGGACAAAAGGAGGGC
...................................................................(((((((((((((.((.((((((((.((.....((((.((((..(((......))))))).)))).)))))))).)).)).)))))..))))))))....................................................
..................................................................67................................................................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786TAX577453(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................GCGACGCTGGTGCAG........................................................................................................................................................................................ 1512.002.00--------------1.00----------------------1.00
.....................................................................................GGACAGGACCCCCCGGTCC............................................................................................................... 191.000.00-----------------------1.00--------------
..................................................................GGGGGTGGGCGGGGAGGCGG................................................................................................................................. 201.000.00---------------------1.00----------------
.....................................................................................GGACAGGACCCCCCGGTTC............................................................................................................... 191.000.00------------------1.00-------------------
.....................................................................................GGACAGGACCCCCCGGT................................................................................................................. 171.000.00-----------------------------1.00--------
..........CACCAGCTGCACCAGATC........................................................................................................................................................................................... 181.000.00----1.00---------------------------------
...................................................................................................................................................ACTCTGTCCCCATCCCATT................................................. 191.000.00-----------------1.00--------------------
.........CCACCAGCTGCACCAGTGCA.......................................................................................................................................................................................... 201.000.00-------------------------1.00------------